Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002068

Physical Location & Seq

Genomic Coordinates Forward (+)

26512120 .. 26514643

Gene Structure 2524 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56306

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGAGGAGAGGGTGGTTTTGAAATGGAGGAAGAATGAGGATGTTCTGTGGTTTGGGTTGTCACTGTTTCTGCGTTTTCCTCTTGCTTCGTCATTGAACGATGAAGGTGGAAACTTGCAGGGGAATAAACTAACTGGTCAAATCCGGGATGAGATTGGTAACTGTGCTTCTCTTATTTATCTGATGGCACCATCTAGAATTCATGTTACTTGTGCACTAGTTTGTGACAAAACATCAACAGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAGCAACCTGATGGTTGTAGTTGGGCACCCATTTTTGTTCGGCAATCAAACTTCAGACTTCCCGTTGATACTAAAGTACCCATTATCATGATTGGTCCTGGAACTGGATTTGCTCCTTTCAGGGATTTCTTGCAGGAAAGATTAGCTCTTACAGAAGATGGAGCAGAACTTGGACCCTCCGTATTATTCTTTGGATGCAGAAATAGTCAAGTTTCTCTAGAAAGATCCATATGGTTGCGGTGGACAAGTATTGGGCGCTTGCTGGTTTGTCTGCCTAATTCTCAAATGCTAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003958 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009698 GO:0009987 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0019748 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

190

Amino Acids

21.33

Weight (kDa)

8.76

Isoelectric Point (pI)

46.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_1	PF00175	122 - 174	2.2e-07	Oxidoreductase NAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30210 AT4G30210 AT4G30210
fragaria_vesca	FvH4_4g08180
malus_domestica	MD13G1253300.v1.1 MD16G1257600.v1.1
prunus_persica	Prupe.1G085400_v2.0.a1
pyrus_communis	pycom12480g00040 pycom13g22470
rosa_chinensis	RchiOBHm_Chr1g0334331 RchiOBHm_Chr4g0402381 RchiOBHm_Chr4g0402391 RchiOBHm_Chr4g0419591 RchiOBHm_Chr7g0226121
rosa_laevigata	RLG00000009089 RLG00000009093 RLG00000009097 RLG00000009098
rosa_multiflora	Rmu_co8074388.1_g000001 Rmu_sc0002660.1_g000001 Rmu_sc0023635.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022590 Rroxscaffold_5G00347040 Rroxscaffold_5G00347050
rosa_rugosa	Rorug03G0293000 Rorug04G0034500 Rorug04G0034500 Rorug04G0034600 Rorug04G0034700 Rorug04G0034800 Rorug04G0034900 Rorug04G0035000 Rorug05G0246500
rosa_samantha	Rh4AG112500 Rh4AG112600 Rh4BG105000 Rh4BG105100 Rh4CG004400 Rh4CG119300 Rh4CG119400 Rh4DG104000 Rh4DG104100 Rh5AG337100
rosa_wichuraiana	Rw4G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	187, 301
AciI	CCGC	1 cut(s)	514
AclWI	GGATC	1 cut(s)	495
AcsI	RAATTY	1 cut(s)	198
AcuI	CTGAAG	1 cut(s)	313
AfaI	GTAC	1 cut(s)	354
AfiI	CCNNNNNNNGG	1 cut(s)	380
AgsI	TTSAA	3 cut(s)	22, 97, 267
AhlI	ACTAGT	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	373
AluBI	AGCT	1 cut(s)	422
AluI	AGCT	1 cut(s)	422
Alw21I	GWGCWC	1 cut(s)	217
Alw44I	GTGCAC	1 cut(s)	213
AlwI	GGATC	1 cut(s)	495
ApaLI	GTGCAC	1 cut(s)	213
ApoI	RAATTY	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	534
AspS9I	GGNCC	2 cut(s)	371, 449
AsuC2I	CCSGG	1 cut(s)	146
AvaII	GGWCC	2 cut(s)	371, 449
BaeGI	GKGCMC	2 cut(s)	217, 304
BaeI	ACNNNNGTAYC	4 cut(s)	336, 336, 369, 369
BanI	GGYRCC	2 cut(s)	187, 301
BarI	GAAGNNNNNNTAC	2 cut(s)	151, 183
Bbv12I	GWGCWC	1 cut(s)	217
BccI	CCATC	4 cut(s)	178, 199, 281, 428
BciT130I	CCWGG	1 cut(s)	375
BcnI	CCSGG	1 cut(s)	146
BcuI	ACTAGT	1 cut(s)	217
BfaI	CTAG	3 cut(s)	195, 218, 494
BfoI	RGCGCY	1 cut(s)	535
Bme1390I	CCNGG	2 cut(s)	146, 375
Bme18I	GGWCC	2 cut(s)	371, 449
BmgT120I	GGNCC	2 cut(s)	371, 449
BmiI	GGNNCC	3 cut(s)	189, 303, 451
BmrFI	CCNGG	2 cut(s)	146, 375
BmsI	GCATC	1 cut(s)	461
BpuMI	CCSGG	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
Bse1I	ACTGG	2 cut(s)	139, 385
BseBI	CCWGG	1 cut(s)	375
BseGI	GGATG	4 cut(s)	46, 154, 279, 476
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseNI	ACTGG	2 cut(s)	139, 385
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	2 cut(s)	217, 304
BshNI	GGYRCC	2 cut(s)	187, 301
BsiHKAI	GWGCWC	1 cut(s)	217
BsiSI	CCGG	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	380
Bsp1286I	GDGCHC	2 cut(s)	217, 304
Bsp143I	GATC	1 cut(s)	500
BspACI	CCGC	1 cut(s)	514
BspHI	TCATGA	1 cut(s)	363
BspLI	GGNNCC	3 cut(s)	189, 303, 451
BspPI	GGATC	1 cut(s)	495
BspT107I	GGYRCC	2 cut(s)	187, 301
BsrI	ACTGG	2 cut(s)	139, 385
BssMI	GATC	1 cut(s)	500
Bst2UI	CCWGG	1 cut(s)	375
Bst4CI	ACNGT	2 cut(s)	66, 164
BstC8I	GCNNGC	1 cut(s)	536
BstF5I	GGATG	4 cut(s)	46, 154, 279, 476
BstH2I	RGCGCY	1 cut(s)	535
BstHHI	GCGC	1 cut(s)	534
BstKTI	GATC	1 cut(s)	503
BstMBI	GATC	1 cut(s)	500
BstNI	CCWGG	1 cut(s)	375
BstSCI	CCNGG	2 cut(s)	144, 373
BstSLI	GKGCMC	2 cut(s)	217, 304
BstX2I	RGATCY	1 cut(s)	500
BstYI	RGATCY	1 cut(s)	500
BtsCI	GGATG	4 cut(s)	46, 154, 279, 476
BtsIMutI	CAGTG	1 cut(s)	62
Cac8I	GCNNGC	1 cut(s)	536
CciI	TCATGA	1 cut(s)	363
CfoI	GCGC	1 cut(s)	534
Cfr13I	GGNCC	2 cut(s)	371, 449
Csp6I	GTAC	1 cut(s)	353
CviAII	CATG	3 cut(s)	203, 270, 364
CviJI	RGCY	1 cut(s)	422
CviKI_1	RGCY	1 cut(s)	422
CviQI	GTAC	1 cut(s)	353
DpnI	GATC	1 cut(s)	502
DpnII	GATC	1 cut(s)	500
Eco47I	GGWCC	2 cut(s)	371, 449
Eco57I	CTGAAG	1 cut(s)	313
EcoRI	GAATTC	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	373
FaeI	CATG	3 cut(s)	206, 273, 367
FaiI	YATR	5 cut(s)	204, 271, 365, 506, 508
FatI	CATG	3 cut(s)	202, 269, 363
FauNDI	CATATG	1 cut(s)	506
FokI	GGATG	4 cut(s)	53, 161, 286, 483
FspBI	CTAG	3 cut(s)	195, 218, 494
GlaI	GCGC	1 cut(s)	533
HaeII	RGCGCY	1 cut(s)	535
HapII	CCGG	1 cut(s)	145
HhaI	GCGC	1 cut(s)	534
Hin1II	CATG	3 cut(s)	206, 273, 367
Hin6I	GCGC	1 cut(s)	532
HinP1I	GCGC	1 cut(s)	532
HinfI	GANTC	1 cut(s)	247
HpaII	CCGG	1 cut(s)	145
Hpy166II	GTNNAC	2 cut(s)	215, 519
Hpy188I	TCNGA	2 cut(s)	183, 332
Hpy188III	TCNNGA	3 cut(s)	195, 364, 494
Hpy8I	GTNNAC	2 cut(s)	215, 519
HpyAV	CCTTC	2 cut(s)	98, 237
HpyCH4III	ACNGT	2 cut(s)	66, 164
HpyCH4V	TGCA	4 cut(s)	118, 215, 409, 474
Hsp92II	CATG	3 cut(s)	206, 273, 367
HspAI	GCGC	1 cut(s)	532
Kzo9I	GATC	1 cut(s)	500
LmnI	GCTCC	2 cut(s)	394, 437
LweI	GCATC	1 cut(s)	461
MaeI	CTAG	3 cut(s)	195, 218, 494
MaeIII	GTNAC	4 cut(s)	60, 158, 205, 224
MalI	GATC	1 cut(s)	502
MboI	GATC	1 cut(s)	500
MboII	GAAGA	2 cut(s)	43, 443
MflI	RGATCY	1 cut(s)	500
MhlI	GDGCHC	2 cut(s)	217, 304
MluCI	AATT	3 cut(s)	198, 553, 568
MnlI	CCTC	5 cut(s)	3, 21, 31, 90, 463
MslI	CAYNNNNRTG	1 cut(s)	362
MspI	CCGG	1 cut(s)	145
MspR9I	CCNGG	2 cut(s)	146, 375
MvaI	CCWGG	1 cut(s)	375
NciI	CCSGG	1 cut(s)	146
NdeI	CATATG	1 cut(s)	506
NdeII	GATC	1 cut(s)	500
NlaIII	CATG	3 cut(s)	206, 273, 367
NlaIV	GGNNCC	3 cut(s)	189, 303, 451
NmuCI	GTSAC	2 cut(s)	60, 224
PagI	TCATGA	1 cut(s)	363
PfeI	GAWTC	1 cut(s)	247
PfoI	TCCNGGA	2 cut(s)	144, 373
Psp6I	CCWGG	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	3 cut(s)	189, 303, 451
PspPI	GGNCC	2 cut(s)	371, 449
PsuI	RGATCY	1 cut(s)	500
RsaI	GTAC	1 cut(s)	354
RsaNI	GTAC	1 cut(s)	353
RseI	CAYNNNNRTG	1 cut(s)	362
Sau3AI	GATC	1 cut(s)	500
Sau96I	GGNCC	2 cut(s)	371, 449
ScrFI	CCNGG	2 cut(s)	146, 375
SduI	GDGCHC	2 cut(s)	217, 304
SetI	ASST	3 cut(s)	109, 286, 424
SfaNI	GCATC	1 cut(s)	461
SinI	GGWCC	2 cut(s)	371, 449
SmiMI	CAYNNNNRTG	1 cut(s)	362
SpeI	ACTAGT	1 cut(s)	217
Sse9I	AATT	3 cut(s)	198, 553, 568
SsiI	CCGC	1 cut(s)	514
SspMI	CTAG	3 cut(s)	195, 218, 494
StyD4I	CCNGG	2 cut(s)	144, 373
TaaI	ACNGT	2 cut(s)	66, 164
TasI	AATT	3 cut(s)	198, 553, 568
TfiI	GAWTC	1 cut(s)	247
TscAI	CASTG	1 cut(s)	69
TseFI	GTSAC	2 cut(s)	60, 224
Tsp45I	GTSAC	2 cut(s)	60, 224
TspDTI	ATGAA	3 cut(s)	117, 191, 290
TspGWI	ACGGA	1 cut(s)	445
TspRI	CASTG	1 cut(s)	69
VneI	GTGCAC	1 cut(s)	213
VpaK11BI	GGWCC	2 cut(s)	371, 449
XapI	RAATTY	1 cut(s)	198
XbaI	TCTAGA	2 cut(s)	194, 493
XspI	CTAG	3 cut(s)	195, 218, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.