Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002068

Physical Location & Seq

Genomic Coordinates Forward (+)

22917025 .. 22922803

Gene Structure 5779 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG119400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2001 bp

ATGGACCCCTCCGCCGAGGTCGCCTCCGCCATTCTCGACAATCGCGACTTCGTTATGATCCTCACGACCTCGATTGCCGTTTTGATCGGCTGCGTCGTCGTTTTTGTGTGGCGGCGATCGAGCGCTCAGAAGCCCAGGGTCGTCCAGCCTCTTAAGCCGTTGATCATCGCCGAGCCTGAGCCGGAGCTCGACGATGGAAGCAAGAAGGTCACAATCTTCTTCGGCACGCAAACCGGTACTGCCGAGGGATTTGCCAAGGCTTTTGCTGAAGAAGCGAAAGCTCGCTATGAAAAGGTCACATTCAAAGTTGTTGATTTGGATGATTATGCAGCTGATGACGAGGCGTATGAGGAGAAATTGAAAAATGAGAGTCTGGCAATTTTCTTTTTGGCGACATATGGTGATGGCGAGCCGACGGATAATGCTGCTAGATTTTACAAGTGGTTTACAGAGGGTAAAGAGAAGGAAGCATGGCTTCAAAATCTTCATTACGGAGTGTTTGGTCTTGGAAACAGGCAGTATGAGCATTTCAACAAGGTGGCCGTGGTTGTGGATGAGTTCCTCGCTGCTCAGGGTGGGAAGCGACTTGTTCCAGTGGGCCTTGGAGATGATGATCAATGCATAGAGGATGATTTCACTGCATGGCGAGAGTTGATGTGGCCTGAGTTGGACCAGTTGCTTCGAGATGAGGATGATGCAACCACACCTGCTTGCACACCTTACACTGCTGCTGTCTTGGAGTATCGAGTTGTATTTCATGATGCTGCTGATGTATCAGTAGAGGATAAGAGCTGGAATAATGCAAATGGTCATGCTGTTATTGATGCTCAGCATCCATGCAGTGCTAATGTTGCTGTGAGAAAGGAACTTCATACTCCTGCATCTGATCGTTCTTGCACCCATCTCGAATTTGATATTGCTAGCACTGGACTTACATACGAAACTGGTGATCATGTCGGTGTGTACTGTGAGAATCTTTCTGAAACTGTAGAAGAGGCGATAAGTTTGTTGGGCTTGGCACCGGAAACGTACTTTTCGATGCACACTGATAAGGATGATGGTACACCACTTAGTGGAGGCTCCTTGTTGCCTCCCTTTCCACCGTGCACATTAAGAACAGCACTAACTCGATATGCTGATCTTTTGAGTTCTCCGAAAAAGTCTGCCCTGCTGGCTTTAGCTGCCTATGCATCTGATCCAGCTGAATCGGATCGATTAAGACATCTTGCATCACCTGCTGGGAAGGATGAATATGCTCAGTGGATGGTTGCGAGTCAGAGAAGCCTTCTTGAGGTCATGGCTGAATTTCCATCAGCCAAGCTCCCACTTGGAGTCTTCTTTGCAGCAGTTGCTCCAAGGATGGCACCATCTAGAATTCATGTTACTTGTGCACTAGTTTATGACAAAACATCAACAGGAAGGATTCACAAAGGAGTGTGTTCAACCTGGATGAAGAATTCTGTGCCTTCCGCAAAAAGTGATGATTGTAGTTGGGCACCCGTTTTTGTTCGGCAATCAAACTTCAGACTTCCCGTTGATACTAAAGTACCAATTCTTATGATTGGTCCTGGAACTGGATTGGCTCCTTTCAGGGGTTTCCTGCAGGAAAGATTAGCTCTTAAAGAAGATGGAGCAGAACTTGGACCCTCCGTATTATTCTTTGGATGCAGAAATAGTCAAATGGACTACATTTATGAAGATGAGCTGAACAACTTTGTAGAAAAAGGTGCACTTTCTGAGCTTGTGGTTGCGTTCTCCCGCCAGGGACCCACTAAGGCATATGTGCAACATAAAATGATGCAGAAGGCTTCAGACATCTGGAACATGCTATCTCAGGGAGGTTATATTTACGTTTGTGGTGATGCTAAGGGCATGGCCAGGGATGTCCACCGGACTCTTCACACAATCGTGCAGGAGCAGGGATCTCTGGACAGCTCCAAAGCTGAGAGCATGGTGAAAAATCTGCAAATGAATGGCAGGTATTTGCGTGATGTGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003958 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009698 GO:0009987 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0019748 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

666

Amino Acids

73.64

Weight (kDa)

5.04

Isoelectric Point (pI)

38.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavodoxin_1	PF00258	72 - 215	2.4e-32	Flavodoxin
FAD_binding_1	PF00667	275 - 483	1.8e-53	FAD binding domain
NAD_binding_1	PF00175	520 - 630	1.7e-16	Oxidoreductase NAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30210 AT4G30210 AT4G30210
fragaria_vesca	FvH4_4g08180
malus_domestica	MD13G1253300.v1.1 MD16G1257600.v1.1
prunus_persica	Prupe.1G085400_v2.0.a1
pyrus_communis	pycom12480g00040 pycom13g22470
rosa_chinensis	RchiOBHm_Chr1g0334331 RchiOBHm_Chr4g0402381 RchiOBHm_Chr4g0402391 RchiOBHm_Chr4g0419591 RchiOBHm_Chr7g0226121
rosa_laevigata	RLG00000009089 RLG00000009093 RLG00000009097 RLG00000009098
rosa_multiflora	Rmu_co8074388.1_g000001 Rmu_sc0002660.1_g000001 Rmu_sc0023635.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022590 Rroxscaffold_5G00347040 Rroxscaffold_5G00347050
rosa_rugosa	Rorug03G0293000 Rorug04G0034500 Rorug04G0034500 Rorug04G0034600 Rorug04G0034700 Rorug04G0034800 Rorug04G0034900 Rorug04G0035000 Rorug05G0246500
rosa_samantha	Rh4AG112500 Rh4AG112600 Rh4BG105000 Rh4BG105100 Rh4CG004400 Rh4CG119300 Rh4CG119400 Rh4DG104000 Rh4DG104100 Rh5AG337100
rosa_wichuraiana	Rw4G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	715, 1243
Acc36I	ACCTGC	3 cut(s)	715, 1243, 1968
AccB1I	GGYRCC	3 cut(s)	1018, 1363, 1495
AccB7I	CCANNNNNTGG	1 cut(s)	1073
AccII	CGCG	1 cut(s)	45
AciI	CCGC	5 cut(s)	12, 27, 112, 1470, 1759
AclWI	GGATC	4 cut(s)	52, 1190, 1218, 1930
AcoI	YGGCCR	2 cut(s)	540, 1875
AcsI	RAATTY	4 cut(s)	908, 1304, 1374, 1456
AcuI	CTGAAG	3 cut(s)	288, 1507, 1794
AdeI	CACNNNGTG	1 cut(s)	1073
AfaI	GTAC	5 cut(s)	238, 965, 1031, 1063, 1548
AfeI	AGCGCT	1 cut(s)	124
AfiI	CCNNNNNNNGG	4 cut(s)	1073, 1291, 1574, 1592
AflII	CTTAAG	1 cut(s)	152
AgeI	ACCGGT	1 cut(s)	233
AgsI	TTSAA	5 cut(s)	304, 361, 479, 532, 1443
AhlI	ACTAGT	1 cut(s)	1393
AjnI	CCWGG	5 cut(s)	134, 1445, 1567, 1761, 1877
AleI	CACNNNNGTG	1 cut(s)	1907
Alw21I	GWGCWC	4 cut(s)	189, 1109, 1393, 1732
Alw44I	GTGCAC	3 cut(s)	1105, 1389, 1728
AlwI	GGATC	4 cut(s)	52, 1190, 1218, 1930
Aor51HI	AGCGCT	1 cut(s)	124
AoxI	GGCC	4 cut(s)	540, 598, 659, 1875
ApaLI	GTGCAC	3 cut(s)	1105, 1389, 1728
ApeKI	GCWGC	8 cut(s)	90, 329, 425, 566, 728, 764, 1181, 1343
ApoI	RAATTY	4 cut(s)	908, 1304, 1374, 1456
AsiGI	ACCGGT	1 cut(s)	233
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	6 cut(s)	4, 598, 670, 1565, 1643, 1766
AsuHPI	GGTGA	5 cut(s)	413, 959, 1224, 1871, 1966
AsuNHI	GCTAGC	1 cut(s)	920
AvaII	GGWCC	5 cut(s)	4, 670, 1565, 1643, 1766
BaeGI	GKGCMC	4 cut(s)	1109, 1393, 1498, 1732
BaeI	ACNNNNGTAYC	4 cut(s)	1530, 1530, 1563, 1563
BalI	TGGCCA	1 cut(s)	1877
BanI	GGYRCC	3 cut(s)	1018, 1363, 1495
BanII	GRGCYC	1 cut(s)	189
BbsI	GAAGAC	1 cut(s)	1327
Bbv12I	GWGCWC	4 cut(s)	189, 1109, 1393, 1732
BbvI	GCAGC	8 cut(s)	77, 341, 412, 553, 715, 751, 1168, 1355
BccI	CCATC	9 cut(s)	188, 398, 909, 1052, 1258, 1318, 1354, 1375, 1622
BceAI	ACGGC	3 cut(s)	62, 142, 527
BcgI	CGANNNNNNTGC	4 cut(s)	233, 267, 886, 920
BciT130I	CCWGG	5 cut(s)	136, 1447, 1569, 1763, 1879
BclI	TGATCA	3 cut(s)	162, 613, 949
BcuI	ACTAGT	1 cut(s)	1393
BfaI	CTAG	4 cut(s)	429, 921, 1371, 1394
BfmI	CTRYAG	2 cut(s)	987, 1601
BfoI	RGCGCY	1 cut(s)	126
BfrI	CTTAAG	1 cut(s)	152
BfuAI	ACCTGC	3 cut(s)	715, 1243, 1968
BglI	GCCNNNNNGGC	1 cut(s)	1172
BisI	GCNGC	9 cut(s)	91, 113, 330, 426, 567, 729, 765, 1182, 1344
BlpI	GCTNAGC	1 cut(s)	828
BlsI	GCNGC	9 cut(s)	92, 114, 331, 427, 568, 730, 766, 1183, 1345
Bme1390I	CCNGG	5 cut(s)	136, 1447, 1569, 1763, 1879
Bme18I	GGWCC	5 cut(s)	4, 670, 1565, 1643, 1766
BmgT120I	GGNCC	6 cut(s)	4, 598, 670, 1565, 1643, 1766
BmiI	GGNNCC	9 cut(s)	6, 1020, 1081, 1365, 1497, 1584, 1645, 1767, 1768
BmrFI	CCNGG	5 cut(s)	136, 1447, 1569, 1763, 1879
BmtI	GCTAGC	1 cut(s)	924
BpiI	GAAGAC	1 cut(s)	1327
BplI	GAGNNNNNCTC	2 cut(s)	8, 40
Bpu10I	CCTNAGC	3 cut(s)	177, 570, 1866
Bpu1102I	GCTNAGC	1 cut(s)	828
BpuEI	CTTGAG	1 cut(s)	1310
Bsa29I	ATCGAT	1 cut(s)	1213
BsaBI	GATNNNNATC	1 cut(s)	612
BsaWI	WCCGGW	3 cut(s)	233, 1021, 1890
Bsc4I	CCNNNNNNNGG	4 cut(s)	1073, 1291, 1574, 1592
Bse118I	RCCGGY	1 cut(s)	233
Bse1I	ACTGG	5 cut(s)	593, 673, 931, 949, 1579
Bse8I	GATNNNNATC	1 cut(s)	612
BseBI	CCWGG	5 cut(s)	136, 1447, 1569, 1763, 1879
BseCI	ATCGAT	1 cut(s)	1213
BseJI	GATNNNNATC	1 cut(s)	612
BseLI	CCNNNNNNNGG	4 cut(s)	1073, 1291, 1574, 1592
BseMII	CTCAG	9 cut(s)	140, 168, 584, 654, 842, 1271, 1728, 1847, 1935
BseNI	ACTGG	5 cut(s)	593, 673, 931, 949, 1579
BseRI	GAGGAG	1 cut(s)	365
BseSI	GKGCMC	4 cut(s)	1109, 1393, 1498, 1732
BseXI	GCAGC	8 cut(s)	77, 341, 412, 553, 715, 751, 1168, 1355
BseYI	CCCAGC	1 cut(s)	1238
BsgI	GTGCAG	1 cut(s)	1931
Bsh1236I	CGCG	1 cut(s)	45
Bsh1285I	CGRYCG	1 cut(s)	119
BshFI	GGCC	4 cut(s)	542, 600, 661, 1877
BshNI	GGYRCC	3 cut(s)	1018, 1363, 1495
BshTI	ACCGGT	1 cut(s)	233
BshVI	ATCGAT	1 cut(s)	1213
BsiEI	CGRYCG	1 cut(s)	119
BsiHKAI	GWGCWC	4 cut(s)	189, 1109, 1393, 1732
BsiSI	CCGG	4 cut(s)	182, 234, 1022, 1891
BslFI	GGGAC	1 cut(s)	1779
BslI	CCNNNNNNNGG	4 cut(s)	1073, 1291, 1574, 1592
BsmFI	GGGAC	1 cut(s)	1779
BsnI	GGCC	4 cut(s)	542, 600, 661, 1877
Bsp1286I	GDGCHC	5 cut(s)	189, 1109, 1393, 1498, 1732
Bsp1720I	GCTNAGC	1 cut(s)	828
Bsp68I	TCGCGA	1 cut(s)	45
BspACI	CCGC	5 cut(s)	12, 27, 112, 1470, 1759
BspANI	GGCC	4 cut(s)	542, 600, 661, 1877
BspCNI	CTCAG	9 cut(s)	139, 169, 583, 655, 841, 1270, 1729, 1846, 1936
BspDI	ATCGAT	1 cut(s)	1213
BspFNI	CGCG	1 cut(s)	45
BspHI	TCATGA	1 cut(s)	757
BspLI	GGNNCC	9 cut(s)	6, 1020, 1081, 1365, 1497, 1584, 1645, 1767, 1768
BspMAI	CTGCAG	1 cut(s)	1605
BspMI	ACCTGC	3 cut(s)	715, 1243, 1968
BspOI	GCTAGC	1 cut(s)	924
BspPI	GGATC	4 cut(s)	52, 1190, 1218, 1930
BspT107I	GGYRCC	3 cut(s)	1018, 1363, 1495
BspTI	CTTAAG	1 cut(s)	152
BsrFI	RCCGGY	1 cut(s)	233
BsrI	ACTGG	5 cut(s)	593, 673, 931, 949, 1579
BssAI	RCCGGY	1 cut(s)	233
BssT1I	CCWWGG	3 cut(s)	255, 601, 1355
Bst2UI	CCWGG	5 cut(s)	136, 1447, 1569, 1763, 1879
Bst4CI	ACNGT	3 cut(s)	968, 988, 1104
Bst6I	CTCTTC	2 cut(s)	987, 1902
BstAFI	CTTAAG	1 cut(s)	152
BstAPI	GCANNNNNTGC	2 cut(s)	1235, 1349
BstC8I	GCNNGC	6 cut(s)	227, 283, 410, 712, 922, 1173
BstDSI	CCRYGG	1 cut(s)	543
BstENI	CCTNNNNNAGG	1 cut(s)	1289
BstFNI	CGCG	1 cut(s)	45
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	125
BstMCI	CGRYCG	1 cut(s)	119
BstNI	CCWGG	5 cut(s)	136, 1447, 1569, 1763, 1879
BstNSI	RCATGY	1 cut(s)	1828
BstSCI	CCNGG	5 cut(s)	134, 1445, 1567, 1761, 1877
BstSFI	CTRYAG	2 cut(s)	987, 1601
BstSLI	GKGCMC	4 cut(s)	1109, 1393, 1498, 1732
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	8 cut(s)	77, 341, 412, 553, 715, 751, 1168, 1355
BstV2I	GAAGAC	1 cut(s)	1327
BstX2I	RGATCY	1 cut(s)	1922
BstYI	RGATCY	1 cut(s)	1922
Bsu15I	ATCGAT	1 cut(s)	1213
BsuRI	GGCC	4 cut(s)	542, 600, 661, 1877
BsuTUI	ATCGAT	1 cut(s)	1213
BtgI	CCRYGG	1 cut(s)	543
BtgZI	GCGATG	1 cut(s)	151
BtsI	GCAGTG	3 cut(s)	636, 723, 847
BtsIMutI	CAGTG	7 cut(s)	600, 636, 723, 847, 924, 1044, 1265
BtuMI	TCGCGA	1 cut(s)	45
BveI	ACCTGC	3 cut(s)	715, 1243, 1968
Cac8I	GCNNGC	6 cut(s)	227, 283, 410, 712, 922, 1173
CciI	TCATGA	1 cut(s)	757
CfoI	GCGC	1 cut(s)	125
Cfr10I	RCCGGY	1 cut(s)	233
Cfr13I	GGNCC	6 cut(s)	4, 598, 670, 1565, 1643, 1766
ClaI	ATCGAT	1 cut(s)	1213
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	5 cut(s)	237, 964, 1030, 1062, 1547
CspAI	ACCGGT	1 cut(s)	233
CviQI	GTAC	5 cut(s)	237, 964, 1030, 1062, 1547
DraIII	CACNNNGTG	1 cut(s)	1073
EaeI	YGGCCR	2 cut(s)	540, 1875
Eam1104I	CTCTTC	2 cut(s)	987, 1902
EarI	CTCTTC	2 cut(s)	987, 1902
EciI	GGCGGA	1 cut(s)	16
Ecl136II	GAGCTC	1 cut(s)	187
Eco130I	CCWWGG	3 cut(s)	255, 601, 1355
Eco24I	GRGCYC	1 cut(s)	189
Eco47I	GGWCC	5 cut(s)	4, 670, 1565, 1643, 1766
Eco47III	AGCGCT	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	187
Eco57I	CTGAAG	3 cut(s)	288, 1507, 1794
EcoICRI	GAGCTC	1 cut(s)	187
EcoNI	CCTNNNNNAGG	1 cut(s)	1289
EcoO109I	RGGNCCY	1 cut(s)	1766
EcoRI	GAATTC	2 cut(s)	1374, 1456
EcoRII	CCWGG	5 cut(s)	134, 1445, 1567, 1761, 1877
EcoT14I	CCWWGG	3 cut(s)	255, 601, 1355
EcoT22I	ATGCAT	2 cut(s)	623, 1192
EcoT38I	GRGCYC	1 cut(s)	189
ErhI	CCWWGG	3 cut(s)	255, 601, 1355
FalI	AAGNNNNNCTT	4 cut(s)	459, 491, 1716, 1748
FaqI	GGGAC	1 cut(s)	1779
FauI	CCCGC	1 cut(s)	1766
FauNDI	CATATG	2 cut(s)	397, 1780
FbaI	TGATCA	3 cut(s)	162, 613, 949
Fnu4HI	GCNGC	9 cut(s)	91, 113, 330, 426, 567, 729, 765, 1182, 1344
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	9 cut(s)	91, 113, 330, 426, 567, 729, 765, 1182, 1344
FspBI	CTAG	4 cut(s)	429, 921, 1371, 1394
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	9 cut(s)	91, 113, 330, 426, 567, 729, 765, 1182, 1344
GsaI	CCCAGC	1 cut(s)	1242
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	4 cut(s)	542, 600, 661, 1877
HapII	CCGG	4 cut(s)	182, 234, 1022, 1891
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	1 cut(s)	125
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HinfI	GANTC	7 cut(s)	370, 973, 1205, 1273, 1332, 1423, 1894
HpaII	CCGG	4 cut(s)	182, 234, 1022, 1891
HphI	GGTGA	5 cut(s)	413, 959, 1224, 1871, 1966
Hpy166II	GTNNAC	7 cut(s)	447, 964, 1064, 1107, 1391, 1730, 1888
Hpy8I	GTNNAC	7 cut(s)	447, 964, 1064, 1107, 1391, 1730, 1888
Hpy99I	CGWCG	4 cut(s)	98, 101, 194, 418
HpyAV	CCTTC	7 cut(s)	199, 457, 1237, 1295, 1413, 1476, 1798
HpyCH4III	ACNGT	3 cut(s)	968, 988, 1104
HpyCH4IV	ACGT	2 cut(s)	1028, 1851
HpySE526I	ACGT	2 cut(s)	1028, 1851
HspAI	GCGC	1 cut(s)	123
KflI	GGGWCCC	1 cut(s)	1766
Ksp22I	TGATCA	3 cut(s)	162, 613, 949
LmnI	GCTCC	8 cut(s)	184, 1085, 1326, 1357, 1588, 1631, 1915, 1940
Lsp1109I	GCAGC	8 cut(s)	77, 341, 412, 553, 715, 751, 1168, 1355
MaeI	CTAG	4 cut(s)	429, 921, 1371, 1394
MaeII	ACGT	2 cut(s)	1028, 1851
MaeIII	GTNAC	3 cut(s)	208, 295, 1381
MflI	RGATCY	1 cut(s)	1922
MhlI	GDGCHC	5 cut(s)	189, 1109, 1393, 1498, 1732
MlsI	TGGCCA	1 cut(s)	1877
MluCI	AATT	7 cut(s)	356, 378, 908, 1304, 1374, 1456, 1551
MluNI	TGGCCA	1 cut(s)	1877
MlyI	GAGTC	4 cut(s)	379, 1282, 1341, 1888
MmeI	TCCRAC	1 cut(s)	648
Mox20I	TGGCCA	1 cut(s)	1877
Mph1103I	ATGCAT	2 cut(s)	623, 1192
MscI	TGGCCA	1 cut(s)	1877
MseI	TTAA	4 cut(s)	153, 1112, 1217, 1620
MslI	CAYNNNNRTG	2 cut(s)	957, 1907
Msp20I	TGGCCA	1 cut(s)	1877
MspA1I	CMGCKG	2 cut(s)	332, 1202
MspCI	CTTAAG	1 cut(s)	152
MspI	CCGG	4 cut(s)	182, 234, 1022, 1891
MspR9I	CCNGG	5 cut(s)	136, 1447, 1569, 1763, 1879
MvaI	CCWGG	5 cut(s)	136, 1447, 1569, 1763, 1879
MvnI	CGCG	1 cut(s)	45
NdeI	CATATG	2 cut(s)	397, 1780
NheI	GCTAGC	1 cut(s)	920
NlaIV	GGNNCC	9 cut(s)	6, 1020, 1081, 1365, 1497, 1584, 1645, 1767, 1768
NmeAIII	GCCGAG	3 cut(s)	40, 196, 268
NmuCI	GTSAC	2 cut(s)	208, 295
NruI	TCGCGA	1 cut(s)	45
NsiI	ATGCAT	2 cut(s)	623, 1192
NspI	RCATGY	1 cut(s)	1828
OliI	CACNNNNGTG	1 cut(s)	1907
PagI	TCATGA	1 cut(s)	757
PaqCI	CACCTGC	2 cut(s)	715, 1243
PasI	CCCWGGG	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	3 cut(s)	42, 93, 1034
PfeI	GAWTC	3 cut(s)	973, 1205, 1423
PflMI	CCANNNNNTGG	1 cut(s)	1073
PfoI	TCCNGGA	1 cut(s)	1567
PinAI	ACCGGT	1 cut(s)	233
PkrI	GCNGC	9 cut(s)	92, 114, 331, 427, 568, 730, 766, 1183, 1345
Ple19I	CGATCG	1 cut(s)	119
PleI	GAGTC	4 cut(s)	378, 1281, 1340, 1888
PpsI	GAGTC	4 cut(s)	378, 1281, 1340, 1888
PpuMI	RGGWCCY	1 cut(s)	1766
Psp124BI	GAGCTC	1 cut(s)	189
Psp5II	RGGWCCY	1 cut(s)	1766
Psp6I	CCWGG	5 cut(s)	134, 1445, 1567, 1761, 1877
PspFI	CCCAGC	1 cut(s)	1238
PspGI	CCWGG	5 cut(s)	134, 1445, 1567, 1761, 1877
PspN4I	GGNNCC	9 cut(s)	6, 1020, 1081, 1365, 1497, 1584, 1645, 1767, 1768
PspPI	GGNCC	6 cut(s)	4, 598, 670, 1565, 1643, 1766
PspPPI	RGGWCCY	1 cut(s)	1766
PstI	CTGCAG	1 cut(s)	1605
PsuI	RGATCY	1 cut(s)	1922
PvuI	CGATCG	1 cut(s)	119
PvuII	CAGCTG	2 cut(s)	332, 1202
RruI	TCGCGA	1 cut(s)	45
RsaI	GTAC	5 cut(s)	238, 965, 1031, 1063, 1548
RsaNI	GTAC	5 cut(s)	237, 964, 1030, 1062, 1547
RseI	CAYNNNNRTG	2 cut(s)	957, 1907
SacI	GAGCTC	1 cut(s)	189
SaqAI	TTAA	4 cut(s)	153, 1112, 1217, 1620
SatI	GCNGC	9 cut(s)	91, 113, 330, 426, 567, 729, 765, 1182, 1344
Sau96I	GGNCC	6 cut(s)	4, 598, 670, 1565, 1643, 1766
SbfI	CCTGCAGG	1 cut(s)	1605
SchI	GAGTC	4 cut(s)	379, 1282, 1341, 1888
ScrFI	CCNGG	5 cut(s)	136, 1447, 1569, 1763, 1879
SdaI	CCTGCAGG	1 cut(s)	1605
SduI	GDGCHC	5 cut(s)	189, 1109, 1393, 1498, 1732
SfcI	CTRYAG	2 cut(s)	987, 1601
SinI	GGWCC	5 cut(s)	4, 670, 1565, 1643, 1766
SmiMI	CAYNNNNRTG	2 cut(s)	957, 1907
SmlI	CTYRAG	2 cut(s)	152, 1289
SmoI	CTYRAG	2 cut(s)	152, 1289
SpeI	ACTAGT	1 cut(s)	1393
Sse8387I	CCTGCAGG	1 cut(s)	1605
Sse9I	AATT	7 cut(s)	356, 378, 908, 1304, 1374, 1456, 1551
SsiI	CCGC	5 cut(s)	12, 27, 112, 1470, 1759
SspMI	CTAG	4 cut(s)	429, 921, 1371, 1394
SstI	GAGCTC	1 cut(s)	189
StyD4I	CCNGG	5 cut(s)	134, 1445, 1567, 1761, 1877
StyI	CCWWGG	3 cut(s)	255, 601, 1355
TaaI	ACNGT	3 cut(s)	968, 988, 1104
TaiI	ACGT	2 cut(s)	1031, 1854
TasI	AATT	7 cut(s)	356, 378, 908, 1304, 1374, 1456, 1551
TatI	WGTACW	1 cut(s)	963
TauI	GCSGC	1 cut(s)	115
TfiI	GAWTC	3 cut(s)	973, 1205, 1423
Tru1I	TTAA	4 cut(s)	153, 1112, 1217, 1620
Tru9I	TTAA	4 cut(s)	153, 1112, 1217, 1620
TscAI	CASTG	7 cut(s)	600, 643, 730, 847, 931, 1051, 1265
TseFI	GTSAC	2 cut(s)	208, 295
TseI	GCWGC	8 cut(s)	90, 329, 425, 566, 728, 764, 1181, 1343
Tsp45I	GTSAC	2 cut(s)	208, 295
TspDTI	ATGAA	9 cut(s)	303, 476, 746, 860, 1263, 1367, 1466, 1710, 1985
TspGWI	ACGGA	3 cut(s)	431, 507, 1639
TspRI	CASTG	7 cut(s)	600, 643, 730, 847, 931, 1051, 1265
Van91I	CCANNNNNTGG	1 cut(s)	1073
Vha464I	CTTAAG	1 cut(s)	152
VneI	GTGCAC	3 cut(s)	1105, 1389, 1728
VpaK11BI	GGWCC	5 cut(s)	4, 670, 1565, 1643, 1766
XagI	CCTNNNNNAGG	1 cut(s)	1289
XapI	RAATTY	4 cut(s)	908, 1304, 1374, 1456
XbaI	TCTAGA	1 cut(s)	1370
XceI	RCATGY	1 cut(s)	1828
XspI	CTAG	4 cut(s)	429, 921, 1371, 1394
Zsp2I	ATGCAT	2 cut(s)	623, 1192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.