Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002068

Physical Location & Seq

Genomic Coordinates Reverse (-)

46370827 .. 46372460

Gene Structure 1634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009089

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAAAAAACTAATTGAGAACACAAAGCGTATTTGGTTCATCGACAGTGGGCGTTGTACCCGGATGAATATGCTCAGTGTATGGTTGCGAGTCAGAGAAGCCTTCTTGAGGTCATGGCTGAATTTCCATCAGCCAAGCCCCCACTTGGAGTCTTCTTTGCAGCAGTTACTCCAAGGTTGCAGCCTAGATACTATTCAATCTTTAGTCATCCCCGAGGCTTCAGACATCTGGAACATGCTATCTCAGGGAGGTTATATTTACGTTTGTGGTGATGCTAAGGGCATGGCCAGGGATGTCCACCGGACACTTCACAATATCGTGCAGGAGCAGGAATCTCTGGACAGCTCCAAAGCTGAGAGCATGGTGAAAAATCTGCAAATGAATGGCAGGTATTTGCGTGATGTGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003958 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009698 GO:0009987 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0019748 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

137

Amino Acids

15.83

Weight (kDa)

8.52

Isoelectric Point (pI)

62.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30210 AT4G30210 AT4G30210
fragaria_vesca	FvH4_4g08180
malus_domestica	MD13G1253300.v1.1 MD16G1257600.v1.1
prunus_persica	Prupe.1G085400_v2.0.a1
pyrus_communis	pycom12480g00040 pycom13g22470
rosa_chinensis	RchiOBHm_Chr1g0334331 RchiOBHm_Chr4g0402381 RchiOBHm_Chr4g0402391 RchiOBHm_Chr4g0419591 RchiOBHm_Chr7g0226121
rosa_laevigata	RLG00000009089 RLG00000009093 RLG00000009097 RLG00000009098
rosa_multiflora	Rmu_co8074388.1_g000001 Rmu_sc0002660.1_g000001 Rmu_sc0023635.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022590 Rroxscaffold_5G00347040 Rroxscaffold_5G00347050
rosa_rugosa	Rorug03G0293000 Rorug04G0034500 Rorug04G0034500 Rorug04G0034600 Rorug04G0034700 Rorug04G0034800 Rorug04G0034900 Rorug04G0035000 Rorug05G0246500
rosa_samantha	Rh4AG112500 Rh4AG112600 Rh4BG105000 Rh4BG105100 Rh4CG004400 Rh4CG119300 Rh4CG119400 Rh4DG104000 Rh4DG104100 Rh5AG337100
rosa_wichuraiana	Rw4G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	378
AcoI	YGGCCR	1 cut(s)	285
AcsI	RAATTY	1 cut(s)	121
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	1 cut(s)	58
AfiI	CCNNNNNNNGG	2 cut(s)	108, 145
AgsI	TTSAA	1 cut(s)	197
AjnI	CCWGG	1 cut(s)	287
AluBI	AGCT	2 cut(s)	345, 353
AluI	AGCT	2 cut(s)	345, 353
Ama87I	CYCGRG	1 cut(s)	212
AoxI	GGCC	1 cut(s)	285
ApeKI	GCWGC	2 cut(s)	160, 180
ApoI	RAATTY	1 cut(s)	121
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	2 cut(s)	281, 376
AvaI	CYCGRG	1 cut(s)	212
BalI	TGGCCA	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	144
BbvI	GCAGC	2 cut(s)	172, 192
BccI	CCATC	1 cut(s)	135
BciT130I	CCWGG	1 cut(s)	289
BcnI	CCSGG	1 cut(s)	61
BfaI	CTAG	1 cut(s)	185
BfuAI	ACCTGC	1 cut(s)	378
BisI	GCNGC	2 cut(s)	161, 181
BlsI	GCNGC	2 cut(s)	162, 182
Bme1390I	CCNGG	2 cut(s)	61, 289
BmeT110I	CYCGRG	1 cut(s)	212
BmrFI	CCNGG	2 cut(s)	61, 289
BmsI	GCATC	1 cut(s)	262
BpiI	GAAGAC	1 cut(s)	144
Bpu10I	CCTNAGC	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	127
BpuMI	CCSGG	1 cut(s)	61
BsaJI	CCNNGG	3 cut(s)	172, 213, 288
BsaWI	WCCGGW	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 145
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	3 cut(s)	172, 213, 288
BseGI	GGATG	3 cut(s)	69, 207, 298
BseLI	CCNNNNNNNGG	2 cut(s)	108, 145
BseMII	CTCAG	3 cut(s)	88, 257, 345
BseXI	GCAGC	2 cut(s)	172, 192
BsgI	GTGCAG	1 cut(s)	341
BshFI	GGCC	1 cut(s)	287
BsiHKCI	CYCGRG	1 cut(s)	212
BsiSI	CCGG	2 cut(s)	61, 301
BslI	CCNNNNNNNGG	2 cut(s)	108, 145
BsnI	GGCC	1 cut(s)	287
BsoBI	CYCGRG	1 cut(s)	212
BspANI	GGCC	1 cut(s)	287
BspCNI	CTCAG	3 cut(s)	87, 256, 346
BspMI	ACCTGC	1 cut(s)	378
BssECI	CCNNGG	3 cut(s)	172, 213, 288
BssT1I	CCWWGG	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	289
Bst4CI	ACNGT	1 cut(s)	47
BstDEI	CTNAG	4 cut(s)	74, 243, 276, 354
BstENI	CCTNNNNNAGG	1 cut(s)	106
BstF5I	GGATG	3 cut(s)	69, 207, 298
BstNI	CCWGG	1 cut(s)	289
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	2 cut(s)	59, 287
BstV1I	GCAGC	2 cut(s)	172, 192
BstV2I	GAAGAC	1 cut(s)	144
BsuRI	GGCC	1 cut(s)	287
BtsCI	GGATG	3 cut(s)	69, 207, 298
BtsIMutI	CAGTG	2 cut(s)	52, 82
BveI	ACCTGC	1 cut(s)	378
Csp6I	GTAC	1 cut(s)	57
CviAII	CATG	4 cut(s)	114, 235, 283, 361
CviJI	RGCY	9 cut(s)	101, 118, 133, 138, 183, 218, 287, 345, 353
CviKI_1	RGCY	9 cut(s)	101, 118, 133, 138, 183, 218, 287, 345, 353
CviQI	GTAC	1 cut(s)	57
DdeI	CTNAG	4 cut(s)	74, 243, 276, 354
EaeI	YGGCCR	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	212
EcoNI	CCTNNNNNAGG	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	4 cut(s)	117, 238, 286, 364
FaiI	YATR	7 cut(s)	71, 82, 115, 236, 255, 284, 362
FatI	CATG	4 cut(s)	113, 234, 282, 360
Fnu4HI	GCNGC	2 cut(s)	161, 181
FokI	GGATG	3 cut(s)	76, 194, 305
Fsp4HI	GCNGC	2 cut(s)	161, 181
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	2 cut(s)	161, 181
HaeIII	GGCC	1 cut(s)	287
HapII	CCGG	2 cut(s)	61, 301
Hin1II	CATG	4 cut(s)	117, 238, 286, 364
HinfI	GANTC	3 cut(s)	90, 149, 332
HpaII	CCGG	2 cut(s)	61, 301
HphI	GGTGA	2 cut(s)	281, 376
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	2 cut(s)	95, 223
Hpy188III	TCNNGA	3 cut(s)	106, 229, 338
Hpy8I	GTNNAC	1 cut(s)	298
HpyAV	CCTTC	1 cut(s)	112
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	4 cut(s)	160, 180, 322, 376
HpyF3I	CTNAG	4 cut(s)	74, 243, 276, 354
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	4 cut(s)	117, 238, 286, 364
LmnI	GCTCC	2 cut(s)	325, 350
Lsp1109I	GCAGC	2 cut(s)	172, 192
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	1 cut(s)	185
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	165
MboII	GAAGA	1 cut(s)	144
MlsI	TGGCCA	1 cut(s)	287
MluCI	AATT	2 cut(s)	12, 121
MluNI	TGGCCA	1 cut(s)	287
MlyI	GAGTC	2 cut(s)	99, 158
MnlI	CCTC	3 cut(s)	102, 208, 242
Mox20I	TGGCCA	1 cut(s)	287
MscI	TGGCCA	1 cut(s)	287
Msp20I	TGGCCA	1 cut(s)	287
MspI	CCGG	2 cut(s)	61, 301
MspR9I	CCNGG	2 cut(s)	61, 289
MvaI	CCWGG	1 cut(s)	289
NciI	CCSGG	1 cut(s)	61
NlaIII	CATG	4 cut(s)	117, 238, 286, 364
NspI	RCATGY	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	332
PkrI	GCNGC	2 cut(s)	162, 182
PleI	GAGTC	2 cut(s)	98, 157
PpsI	GAGTC	2 cut(s)	98, 157
Psp6I	CCWGG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	287
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
SatI	GCNGC	2 cut(s)	161, 181
SchI	GAGTC	2 cut(s)	99, 158
ScrFI	CCNGG	2 cut(s)	61, 289
SetI	ASST	7 cut(s)	113, 178, 253, 264, 347, 355, 392
SfaNI	GCATC	1 cut(s)	262
SmlI	CTYRAG	1 cut(s)	106
SmoI	CTYRAG	1 cut(s)	106
Sse9I	AATT	2 cut(s)	12, 121
SspMI	CTAG	1 cut(s)	185
StyD4I	CCNGG	2 cut(s)	59, 287
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	1 cut(s)	47
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	1 cut(s)	42
TasI	AATT	2 cut(s)	12, 121
TfiI	GAWTC	1 cut(s)	332
TscAI	CASTG	2 cut(s)	52, 82
TseI	GCWGC	2 cut(s)	160, 180
TspDTI	ATGAA	4 cut(s)	17, 28, 80, 395
TspRI	CASTG	2 cut(s)	52, 82
XagI	CCTNNNNNAGG	1 cut(s)	106
XapI	RAATTY	1 cut(s)	121
XceI	RCATGY	1 cut(s)	238
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.