Rorug05G0246500

belongs to the flavoprotein pyridine nucleotide cytochrome reductase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
26542774 .. 26543637
864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0246500.1

Sequence Viewer

Length: 762 bp
ATGGGTAGTTCCTTGGCTGTTAAGTGCACTCATTCTGGACAAGGTTTCATGTTTCGTATTAATCAATGTATGAGCTATGCTCATTTGTTTGAATACATTTGTGAACGGTTCAAGTTTTCTGCAACTGATGGTATTGAGCTTCATTATTCGCTTCCTGGATGCACTATTTTTTTTCTTCGCAATGATGATGATTTCCAGATGCTGTCTAGCGGTGCCAAGATTTACAAGTTGGATTGTGTTGATATTACGGTGTTGAACAATAGTGTAAGTTGCAGCAAAAAAGCTTCTGTTTCATTTGAAGATAGCTGCTCTGGTATTGTGGATGAAGATGATTACCTCACTGAGGCATTTAGGACTGAAGTTCAAAAGTCTTACTTGTCAAATGAGTGGGCTAGTTACATTCAATGTGTAGGGCAGAAATTTCGTGACGGTTCCCCTGAGTTTCGAGACAATCTCAGAAAGTATGCTATTGAAGTTGGGTTCAGCTTTGTATGCTTTATTATTGGTGAGTTGAACAATGTCCACTCTTGTAAAGGTGTTCTTCGGAAGCAAAAACATGAGCTTTTGGGATCGAAAATTGTCAAGACAAGTATTGAAAAGGACATTAGCTATAACTTGTCATTGAAGCCGAGGGAAATTATCAGCAAGTTCAAGTCAGCTTATGGGTTTGATATATCGTACAAGGTTTCTTGGAAAGCAAAGCAGAAGGCTAGGGAAATGATTTACGGTTCTGAGGCTGATTCGTTTAACATGCTAACTTAG

Protein Analysis

253

Amino Acids

28.81

Weight (kDa)

7.5

Isoelectric Point (pI)

31.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 212
AciI CCGC 1 cut(s) 210
AclWI GGATC 1 cut(s) 577
AcsI RAATTY 1 cut(s) 419
AcuI CTGAAG 1 cut(s) 378
AfaI GTAC 1 cut(s) 680
AfiI CCNNNNNNNGG 1 cut(s) 343
AjnI CCWGG 1 cut(s) 154
AluBI AGCT 8 cut(s) 75, 139, 284, 306, 486, 562, 609, 659
AluI AGCT 8 cut(s) 75, 139, 284, 306, 486, 562, 609, 659
Alw21I GWGCWC 1 cut(s) 29
Alw26I GTCTC 1 cut(s) 441
Alw44I GTGCAC 1 cut(s) 25
AlwI GGATC 1 cut(s) 577
AlwNI CAGNNNCTG 1 cut(s) 202
ApaLI GTGCAC 1 cut(s) 25
ApeKI GCWGC 2 cut(s) 273, 306
ApoI RAATTY 1 cut(s) 419
AseI ATTAAT 1 cut(s) 60
AsuHPI GGTGA 1 cut(s) 518
BaeGI GKGCMC 1 cut(s) 29
BanI GGYRCC 1 cut(s) 212
Bbv12I GWGCWC 1 cut(s) 29
BbvI GCAGC 2 cut(s) 285, 293
BccI CCATC 1 cut(s) 122
BcgI CGANNNNNNTGC 2 cut(s) 404, 438
BciT130I CCWGG 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 441
BfaI CTAG 3 cut(s) 207, 393, 711
BisI GCNGC 2 cut(s) 274, 307
BlsI GCNGC 2 cut(s) 275, 308
Bme1390I CCNGG 1 cut(s) 156
BmiI GGNNCC 2 cut(s) 214, 433
BmrFI CCNGG 1 cut(s) 156
BmsI GCATC 2 cut(s) 149, 189
BplI GAGNNNNNCTC 4 cut(s) 64, 96, 438, 470
BsaJI CCNNGG 2 cut(s) 12, 629
Bsc4I CCNNNNNNNGG 1 cut(s) 343
Bse3DI GCAATG 1 cut(s) 187
BseBI CCWGG 1 cut(s) 156
BseDI CCNNGG 2 cut(s) 12, 629
BseGI GGATG 2 cut(s) 164, 328
BseLI CCNNNNNNNGG 1 cut(s) 343
BseMI GCAATG 1 cut(s) 187
BseMII CTCAG 4 cut(s) 333, 429, 469, 723
BseSI GKGCMC 1 cut(s) 29
BseXI GCAGC 2 cut(s) 285, 293
BshNI GGYRCC 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 343
BsmAI GTCTC 1 cut(s) 441
Bsp1286I GDGCHC 1 cut(s) 29
Bsp143I GATC 1 cut(s) 569
BspACI CCGC 1 cut(s) 210
BspCNI CTCAG 4 cut(s) 334, 430, 468, 724
BspLI GGNNCC 2 cut(s) 214, 433
BspPI GGATC 1 cut(s) 577
BspT107I GGYRCC 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 187
BssECI CCNNGG 2 cut(s) 12, 629
BssMI GATC 1 cut(s) 569
BssT1I CCWWGG 1 cut(s) 12
Bst2UI CCWGG 1 cut(s) 156
Bst4CI ACNGT 4 cut(s) 108, 250, 431, 728
BstDEI CTNAG 5 cut(s) 342, 438, 455, 732, 759
BstENI CCTNNNNNAGG 1 cut(s) 341
BstF5I GGATG 2 cut(s) 164, 328
BstKTI GATC 1 cut(s) 572
BstMAI GTCTC 1 cut(s) 441
BstMBI GATC 1 cut(s) 569
BstMWI GCNNNNNNNGC 1 cut(s) 492
BstNI CCWGG 1 cut(s) 156
BstNSI RCATGY 1 cut(s) 754
BstSCI CCNGG 1 cut(s) 154
BstSLI GKGCMC 1 cut(s) 29
BstV1I GCAGC 2 cut(s) 285, 293
BtsCI GGATG 2 cut(s) 164, 328
BtsIMutI CAGTG 1 cut(s) 339
CaiI CAGNNNCTG 1 cut(s) 202
Csp6I GTAC 1 cut(s) 679
CviAII CATG 3 cut(s) 49, 557, 751
CviQI GTAC 1 cut(s) 679
DdeI CTNAG 5 cut(s) 342, 438, 455, 732, 759
DpnI GATC 1 cut(s) 571
DpnII GATC 1 cut(s) 569
Eco130I CCWWGG 1 cut(s) 12
Eco57I CTGAAG 1 cut(s) 378
EcoNI CCTNNNNNAGG 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 3 cut(s) 52, 560, 754
FalI AAGNNNNNCTT 4 cut(s) 359, 391, 525, 557
FatI CATG 3 cut(s) 48, 556, 750
Fnu4HI GCNGC 2 cut(s) 274, 307
FokI GGATG 2 cut(s) 171, 335
Fsp4HI GCNGC 2 cut(s) 274, 307
FspBI CTAG 3 cut(s) 207, 393, 711
GluI GCNGC 2 cut(s) 274, 307
Hin1II CATG 3 cut(s) 52, 560, 754
HindIII AAGCTT 1 cut(s) 282
HinfI GANTC 1 cut(s) 740
HphI GGTGA 1 cut(s) 518
Hpy166II GTNNAC 3 cut(s) 27, 104, 523
Hpy188I TCNGA 3 cut(s) 458, 546, 733
Hpy188III TCNNGA 5 cut(s) 36, 196, 425, 446, 583
Hpy8I GTNNAC 3 cut(s) 27, 104, 523
HpyAV CCTTC 1 cut(s) 700
HpyCH4III ACNGT 4 cut(s) 108, 250, 431, 728
HpyCH4V TGCA 4 cut(s) 27, 122, 162, 273
HpyF10VI GCNNNNNNNGC 1 cut(s) 492
HpyF3I CTNAG 5 cut(s) 342, 438, 455, 732, 759
Hsp92II CATG 3 cut(s) 52, 560, 754
Kzo9I GATC 1 cut(s) 569
LpnPI CCDG 6 cut(s) 21, 141, 168, 209, 297, 450
Lsp1109I GCAGC 2 cut(s) 285, 293
LweI GCATC 2 cut(s) 149, 189
MaeI CTAG 3 cut(s) 207, 393, 711
MaeIII GTNAC 2 cut(s) 395, 425
MalI GATC 1 cut(s) 571
MboI GATC 1 cut(s) 569
MboII GAAGA 4 cut(s) 167, 311, 338, 533
MhlI GDGCHC 1 cut(s) 29
MluCI AATT 3 cut(s) 419, 576, 636
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 4 cut(s) 337, 347, 624, 727
MseI TTAA 3 cut(s) 21, 60, 747
MspR9I CCNGG 1 cut(s) 156
MvaI CCWGG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 492
NdeII GATC 1 cut(s) 569
NlaIII CATG 3 cut(s) 52, 560, 754
NlaIV GGNNCC 2 cut(s) 214, 433
NmeAIII GCCGAG 1 cut(s) 654
NmuCI GTSAC 1 cut(s) 425
NspI RCATGY 1 cut(s) 754
PfeI GAWTC 1 cut(s) 740
PfoI TCCNGGA 1 cut(s) 154
PkrI GCNGC 2 cut(s) 275, 308
PshBI ATTAAT 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 154
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 2 cut(s) 214, 433
PstNI CAGNNNCTG 1 cut(s) 202
RsaI GTAC 1 cut(s) 680
RsaNI GTAC 1 cut(s) 679
SaqAI TTAA 3 cut(s) 21, 60, 747
SatI GCNGC 2 cut(s) 274, 307
Sau3AI GATC 1 cut(s) 569
ScrFI CCNGG 1 cut(s) 156
SduI GDGCHC 1 cut(s) 29
SfaNI GCATC 2 cut(s) 149, 189
Sse9I AATT 3 cut(s) 419, 576, 636
SsiI CCGC 1 cut(s) 210
SspMI CTAG 3 cut(s) 207, 393, 711
StyD4I CCNGG 1 cut(s) 154
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 4 cut(s) 108, 250, 431, 728
TaqI TCGA 2 cut(s) 445, 572
TasI AATT 3 cut(s) 419, 576, 636
TfiI GAWTC 1 cut(s) 740
Tru1I TTAA 3 cut(s) 21, 60, 747
Tru9I TTAA 3 cut(s) 21, 60, 747
TscAI CASTG 1 cut(s) 346
TseFI GTSAC 1 cut(s) 425
TseI GCWGC 2 cut(s) 273, 306
Tsp45I GTSAC 1 cut(s) 425
TspDTI ATGAA 4 cut(s) 37, 131, 282, 339
TspRI CASTG 1 cut(s) 346
VneI GTGCAC 1 cut(s) 25
VspI ATTAAT 1 cut(s) 60
XagI CCTNNNNNAGG 1 cut(s) 341
XapI RAATTY 1 cut(s) 419
XceI RCATGY 1 cut(s) 754
XspI CTAG 3 cut(s) 207, 393, 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.