Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002068

Physical Location & Seq

Genomic Coordinates Reverse (-)

5116542 .. 5116823

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0034600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGCTGTCAATGGAGTCCTTCAGCCGCCATGGAGACTGCGGAAGATCATTGAAGATATCAAGATCATTGCTTCAAGTTTCTCTAATATTACTTTCAAACACGTATTTAGAGAAGCCAATTTCGTTGCGGATGTTTTCGCAAATCTTGACCATAATAGTTATGATAGTACTACTTGGTTTCTCTAATATTACTTTCAAACACGTATTTAGAGAAGCCAATTTCGTTGCGGATGTTTTCGCAAATCTTGACCATAATAGTTATGATAGTACTACTTGCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003958 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009698 GO:0009987 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0019748 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

93

Amino Acids

10.58

Weight (kDa)

8.74

Isoelectric Point (pI)

41.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30210 AT4G30210 AT4G30210
fragaria_vesca	FvH4_4g08180
malus_domestica	MD13G1253300.v1.1 MD16G1257600.v1.1
prunus_persica	Prupe.1G085400_v2.0.a1
pyrus_communis	pycom12480g00040 pycom13g22470
rosa_chinensis	RchiOBHm_Chr1g0334331 RchiOBHm_Chr4g0402381 RchiOBHm_Chr4g0402391 RchiOBHm_Chr4g0419591 RchiOBHm_Chr7g0226121
rosa_laevigata	RLG00000009089 RLG00000009093 RLG00000009097 RLG00000009098
rosa_multiflora	Rmu_co8074388.1_g000001 Rmu_sc0002660.1_g000001 Rmu_sc0023635.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022590 Rroxscaffold_5G00347040 Rroxscaffold_5G00347050
rosa_rugosa	Rorug03G0293000 Rorug04G0034500 Rorug04G0034500 Rorug04G0034600 Rorug04G0034700 Rorug04G0034800 Rorug04G0034900 Rorug04G0035000 Rorug05G0246500
rosa_samantha	Rh4AG112500 Rh4AG112600 Rh4BG105000 Rh4BG105100 Rh4CG004400 Rh4CG119300 Rh4CG119400 Rh4DG104000 Rh4DG104100 Rh5AG337100
rosa_wichuraiana	Rw4G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	25, 39, 127, 227
AcuI	CTGAAG	1 cut(s)	4
AfaI	GTAC	2 cut(s)	168, 268
AflIII	ACRYGT	2 cut(s)	99, 199
AgsI	TTSAA	4 cut(s)	52, 74, 96, 196
Alw26I	GTCTC	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	27
BisI	GCNGC	1 cut(s)	25
BlsI	GCNGC	1 cut(s)	26
BmcAI	AGTACT	2 cut(s)	168, 268
BsaAI	YACGTR	2 cut(s)	102, 202
BsaJI	CCNNGG	1 cut(s)	28
Bse3DI	GCAATG	1 cut(s)	65
BseDI	CCNNGG	1 cut(s)	28
BseGI	GGATG	2 cut(s)	135, 235
BseMI	GCAATG	1 cut(s)	65
BsmAI	GTCTC	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	44, 62
Bsp19I	CCATGG	1 cut(s)	28
BspACI	CCGC	4 cut(s)	25, 39, 127, 227
BsrDI	GCAATG	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	2 cut(s)	44, 62
BssT1I	CCWWGG	1 cut(s)	28
BstBAI	YACGTR	2 cut(s)	102, 202
BstDSI	CCRYGG	1 cut(s)	28
BstF5I	GGATG	2 cut(s)	135, 235
BstKTI	GATC	2 cut(s)	47, 65
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	2 cut(s)	44, 62
BtgI	CCRYGG	1 cut(s)	28
BtsCI	GGATG	2 cut(s)	135, 235
Csp6I	GTAC	2 cut(s)	167, 267
CviAII	CATG	1 cut(s)	29
CviJI	RGCY	3 cut(s)	24, 115, 215
CviKI_1	RGCY	3 cut(s)	24, 115, 215
CviQI	GTAC	2 cut(s)	167, 267
DpnI	GATC	2 cut(s)	46, 64
DpnII	GATC	2 cut(s)	44, 62
Eco130I	CCWWGG	1 cut(s)	28
Eco32I	GATATC	1 cut(s)	57
Eco57I	CTGAAG	1 cut(s)	4
EcoRV	GATATC	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	1 cut(s)	32
FaiI	YATR	5 cut(s)	30, 152, 161, 252, 261
FatI	CATG	1 cut(s)	28
Fnu4HI	GCNGC	1 cut(s)	25
FokI	GGATG	2 cut(s)	142, 242
Fsp4HI	GCNGC	1 cut(s)	25
GluI	GCNGC	1 cut(s)	25
Hin1II	CATG	1 cut(s)	32
HinfI	GANTC	1 cut(s)	14
Hpy188III	TCNNGA	3 cut(s)	60, 145, 245
HpyAV	CCTTC	1 cut(s)	28
HpyCH4IV	ACGT	2 cut(s)	101, 201
HpyCH4V	TGCA	1 cut(s)	276
HpySE526I	ACGT	2 cut(s)	101, 201
Hsp92II	CATG	1 cut(s)	32
Kzo9I	GATC	2 cut(s)	44, 62
MaeII	ACGT	2 cut(s)	101, 201
MalI	GATC	2 cut(s)	46, 64
MboI	GATC	2 cut(s)	44, 62
MboII	GAAGA	2 cut(s)	54, 64
MluCI	AATT	2 cut(s)	117, 217
MlyI	GAGTC	1 cut(s)	23
NcoI	CCATGG	1 cut(s)	28
NdeII	GATC	2 cut(s)	44, 62
NlaIII	CATG	1 cut(s)	32
PkrI	GCNGC	1 cut(s)	26
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
Ppu21I	YACGTR	2 cut(s)	102, 202
RsaI	GTAC	2 cut(s)	168, 268
RsaNI	GTAC	2 cut(s)	167, 267
SatI	GCNGC	1 cut(s)	25
Sau3AI	GATC	2 cut(s)	44, 62
ScaI	AGTACT	2 cut(s)	168, 268
SchI	GAGTC	1 cut(s)	23
SetI	ASST	2 cut(s)	104, 204
SgeI	CNNG	8 cut(s)	41, 72, 86, 112, 157, 185, 212, 257
Sse9I	AATT	2 cut(s)	117, 217
SsiI	CCGC	4 cut(s)	25, 39, 127, 227
SspI	AATATT	2 cut(s)	87, 187
StyI	CCWWGG	1 cut(s)	28
TaiI	ACGT	2 cut(s)	104, 204
TasI	AATT	2 cut(s)	117, 217
TatI	WGTACW	2 cut(s)	166, 266
TauI	GCSGC	1 cut(s)	27
ZrmI	AGTACT	2 cut(s)	168, 268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.