Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002068

Physical Location & Seq

Genomic Coordinates Forward (+)

5181597 .. 5182497

Gene Structure 901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0034800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGAGGTGGGTTTTCAGATCAGAGGGAGTAATTTATTCTCCTTGTTTCGGAGCTCTGATGGTCTTTGCCTAACTCTTTGGGATCTCGAAGTGAGAATGGGATTGAGAATTGAGCGCAGAAAGAGATGGACAAGGCACGTTGACTTCATGAAAATACCATTTCCTGAAAATACGTTTGATGCGGTATATGCAATTGAAGCTACCTGCCATGCACCAGATGCAGCAGAGATTGAGATTGGTGATGGCCTCCCGGACATCAGATTGACAGTAAAGTGCCTTGAAGCTTTGAAACAAACAGGTTTTGAGGTCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003958 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009698 GO:0009987 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0019748 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

104

Amino Acids

11.89

Weight (kDa)

5.34

Isoelectric Point (pI)

64.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30210 AT4G30210 AT4G30210
fragaria_vesca	FvH4_4g08180
malus_domestica	MD13G1253300.v1.1 MD16G1257600.v1.1
prunus_persica	Prupe.1G085400_v2.0.a1
pyrus_communis	pycom12480g00040 pycom13g22470
rosa_chinensis	RchiOBHm_Chr1g0334331 RchiOBHm_Chr4g0402381 RchiOBHm_Chr4g0402391 RchiOBHm_Chr4g0419591 RchiOBHm_Chr7g0226121
rosa_laevigata	RLG00000009089 RLG00000009093 RLG00000009097 RLG00000009098
rosa_multiflora	Rmu_co8074388.1_g000001 Rmu_sc0002660.1_g000001 Rmu_sc0023635.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022590 Rroxscaffold_5G00347040 Rroxscaffold_5G00347050
rosa_rugosa	Rorug03G0293000 Rorug04G0034500 Rorug04G0034500 Rorug04G0034600 Rorug04G0034700 Rorug04G0034800 Rorug04G0034900 Rorug04G0035000 Rorug05G0246500
rosa_samantha	Rh4AG112500 Rh4AG112600 Rh4BG105000 Rh4BG105100 Rh4CG004400 Rh4CG119300 Rh4CG119400 Rh4DG104000 Rh4DG104100 Rh5AG337100
rosa_wichuraiana	Rw4G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	212
AciI	CCGC	1 cut(s)	182
AclWI	GGATC	1 cut(s)	90
AfiI	CCNNNNNNNGG	1 cut(s)	48
AgsI	TTSAA	3 cut(s)	197, 281, 289
AluBI	AGCT	3 cut(s)	54, 200, 284
AluI	AGCT	3 cut(s)	54, 200, 284
Alw21I	GWGCWC	1 cut(s)	56
AlwI	GGATC	1 cut(s)	90
AoxI	GGCC	1 cut(s)	244
ApeKI	GCWGC	1 cut(s)	221
AspLEI	GCGC	1 cut(s)	117
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	56
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	3 cut(s)	53, 120, 236
BcnI	CCSGG	1 cut(s)	251
BfuAI	ACCTGC	1 cut(s)	212
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
Bme1390I	CCNGG	1 cut(s)	251
BmrFI	CCNGG	1 cut(s)	251
BmsI	GCATC	2 cut(s)	169, 208
BpuMI	CCSGG	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	233
BshFI	GGCC	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	56
BsiSI	CCGG	1 cut(s)	251
BslI	CCNNNNNNNGG	1 cut(s)	48
BsnI	GGCC	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	2 cut(s)	18, 82
BspACI	CCGC	1 cut(s)	182
BspANI	GGCC	1 cut(s)	246
BspHI	TCATGA	1 cut(s)	147
BspMI	ACCTGC	1 cut(s)	212
BspPI	GGATC	1 cut(s)	90
BssMI	GATC	2 cut(s)	18, 82
Bst4CI	ACNGT	1 cut(s)	268
BstAPI	GCANNNNNTGC	1 cut(s)	218
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	2 cut(s)	21, 85
BstMBI	GATC	2 cut(s)	18, 82
BstMWI	GCNNNNNNNGC	3 cut(s)	188, 197, 218
BstSCI	CCNGG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	233
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	246
BveI	ACCTGC	1 cut(s)	212
CciI	TCATGA	1 cut(s)	147
CfoI	GCGC	1 cut(s)	117
CviAII	CATG	2 cut(s)	148, 209
CviJI	RGCY	4 cut(s)	54, 200, 246, 284
CviKI_1	RGCY	4 cut(s)	54, 200, 246, 284
DpnI	GATC	2 cut(s)	20, 84
DpnII	GATC	2 cut(s)	18, 82
Ecl136II	GAGCTC	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	56
Eco53kI	GAGCTC	1 cut(s)	54
EcoICRI	GAGCTC	1 cut(s)	54
EcoT38I	GRGCYC	1 cut(s)	56
FaeI	CATG	2 cut(s)	151, 212
FaiI	YATR	4 cut(s)	149, 187, 189, 210
FatI	CATG	2 cut(s)	147, 208
Fnu4HI	GCNGC	1 cut(s)	222
FriOI	GRGCYC	1 cut(s)	56
Fsp4HI	GCNGC	1 cut(s)	222
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	246
HapII	CCGG	1 cut(s)	251
HhaI	GCGC	1 cut(s)	117
Hin1II	CATG	2 cut(s)	151, 212
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	282
HpaII	CCGG	1 cut(s)	251
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	5 cut(s)	18, 23, 51, 58, 260
Hpy188III	TCNNGA	3 cut(s)	86, 148, 164
Hpy8I	GTNNAC	1 cut(s)	142
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4IV	ACGT	2 cut(s)	138, 173
HpyCH4V	TGCA	3 cut(s)	191, 212, 221
HpyF10VI	GCNNNNNNNGC	3 cut(s)	188, 197, 218
HpySE526I	ACGT	2 cut(s)	138, 173
Hsp92II	CATG	2 cut(s)	151, 212
HspAI	GCGC	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	18, 82
LmnI	GCTCC	1 cut(s)	51
LpnPI	CCDG	5 cut(s)	177, 217, 228, 264, 282
Lsp1109I	GCAGC	1 cut(s)	233
LweI	GCATC	2 cut(s)	169, 208
MaeII	ACGT	2 cut(s)	138, 173
MalI	GATC	2 cut(s)	20, 84
MboI	GATC	2 cut(s)	18, 82
MfeI	CAATTG	1 cut(s)	192
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	3 cut(s)	31, 108, 192
MnlI	CCTC	3 cut(s)	17, 257, 298
MspI	CCGG	1 cut(s)	251
MspR9I	CCNGG	1 cut(s)	251
MunI	CAATTG	1 cut(s)	192
MwoI	GCNNNNNNNGC	3 cut(s)	188, 197, 218
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	2 cut(s)	18, 82
NlaIII	CATG	2 cut(s)	151, 212
PagI	TCATGA	1 cut(s)	147
PfoI	TCCNGGA	1 cut(s)	249
PkrI	GCNGC	1 cut(s)	223
Psp124BI	GAGCTC	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	82
SacI	GAGCTC	1 cut(s)	56
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	2 cut(s)	18, 82
ScrFI	CCNGG	1 cut(s)	251
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	9 cut(s)	9, 56, 141, 176, 202, 206, 286, 301, 309
SfaNI	GCATC	2 cut(s)	169, 208
Sse9I	AATT	3 cut(s)	31, 108, 192
SsiI	CCGC	1 cut(s)	182
SstI	GAGCTC	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	249
TaaI	ACNGT	1 cut(s)	268
TaiI	ACGT	2 cut(s)	141, 176
TaqI	TCGA	1 cut(s)	87
TasI	AATT	3 cut(s)	31, 108, 192
TseI	GCWGC	1 cut(s)	221
TspDTI	ATGAA	2 cut(s)	136, 164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.