Rmu_sc0023635.1_g000001

belongs to the flavoprotein pyridine nucleotide cytochrome reductase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023635.1
Physical Location & Seq
Reverse (-)
2 .. 3621
3620 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023635.1_g000001.1.cds

Sequence Viewer

Length: 1054 bp
atgaccggtacaacaagtaatacctaccaaccaaccacacgaccgcggaagcttttaaggccaactcccccgcccatcccggttcccattctaactagtggctttaaatcgcaagaggccaaagtgtccctattggggacgagacaccttataatatgcaccttaagctattgttttcaacgcaccggattccggagactgtttttgaatcaggatcaggcgatggagtcgacttccgatagctcgatgaaaatctcgccgttggatctgatggcggcgatcttcaagggcaagatggacccctccaacgcctccgctgcctcctccgccggcgccgaggtcgcctccgtcattctcgagaatcgtgagttcgttatgatcctcacgacctcgattgccattttgatcggctgcgtcgtcgtttttgtgtggcggcgctcgagtgctcagaagcccaaggttgtccagcctcttaagccgttggtcatcaccgtgcctgaaccggagctcgacgatggaagtaagaaggtcacaatcttcttcggcacgcaaaccggtactgctgagggatttgccaaggctttggctgaagaagcgaaagctcgctatgaaaaggtcacattcaaagttgttgatttggatgattacgcagccgatgacgaggagtatgaggagaaattgaaaaatgagagtttggcaattttcttcttggccacatatggtgatggtgagccgaccgataatgctgctagattttacaagtggtttacagagggtaaagagaaagaagcatggcttcaaaatcttcattacggagtgtttggtcttggaaacaggcagtatgagcatttcaataaggtggccgtggttgtggatgagatccttgctgctcagggtgggaagagacttgtttcagtgggccttggagatgatgatcaatgcatagaggatgatttcactgcatggcgagagtcgatgtggcctgagttggaccagttgcttcgagatgaggatgatgcaaccacacctgcttgcacaccttacactgctgctg

Protein Analysis

351

Amino Acids

38.92

Weight (kDa)

4.99

Isoelectric Point (pI)

38.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 152
AarI CACCTGC 1 cut(s) 1036
Acc36I ACCTGC 1 cut(s) 1036
AccB1I GGYRCC 1 cut(s) 332
AccI GTMKAC 1 cut(s) 230
AccII CGCG 1 cut(s) 46
AccIII TCCGGA 1 cut(s) 192
AciI CCGC 7 cut(s) 44, 46, 71, 275, 315, 327, 433
AclWI GGATC 4 cut(s) 222, 273, 373, 874
AcoI YGGCCR 2 cut(s) 711, 861
AcuI CTGAAG 1 cut(s) 609
AcyI GRCGYC 1 cut(s) 333
AfaI GTAC 2 cut(s) 10, 559
AfiI CCNNNNNNNGG 2 cut(s) 135, 192
AflII CTTAAG 2 cut(s) 163, 473
AgeI ACCGGT 2 cut(s) 5, 554
AgsI TTSAA 7 cut(s) 179, 208, 286, 625, 682, 800, 853
AhlI ACTAGT 1 cut(s) 95
AluBI AGCT 5 cut(s) 52, 168, 243, 508, 602
AluI AGCT 5 cut(s) 52, 168, 243, 508, 602
Alw21I GWGCWC 2 cut(s) 448, 510
Alw26I GTCTC 3 cut(s) 136, 190, 898
AlwI GGATC 4 cut(s) 222, 273, 373, 874
Ama87I CYCGRG 2 cut(s) 356, 439
Aor13HI TCCGGA 1 cut(s) 192
AoxI GGCC 6 cut(s) 59, 117, 711, 861, 919, 980
ApeKI GCWGC 6 cut(s) 317, 411, 650, 746, 887, 1049
AsiGI ACCGGT 2 cut(s) 5, 554
AspLEI GCGC 2 cut(s) 335, 438
AspS9I GGNCC 3 cut(s) 298, 919, 991
AsuC2I CCSGG 1 cut(s) 80
AsuHPI GGTGA 3 cut(s) 481, 734, 740
AvaI CYCGRG 2 cut(s) 356, 439
AvaII GGWCC 2 cut(s) 298, 991
BalI TGGCCA 1 cut(s) 713
BanI GGYRCC 1 cut(s) 332
BanII GRGCYC 1 cut(s) 510
Bbv12I GWGCWC 2 cut(s) 448, 510
BbvCI CCTCAGC 1 cut(s) 564
BbvI GCAGC 6 cut(s) 304, 398, 662, 733, 874, 1036
BccI CCATC 6 cut(s) 83, 217, 265, 289, 509, 719
BceAI ACGGC 3 cut(s) 244, 463, 848
BcgI CGANNNNNNTGC 2 cut(s) 728, 762
BclI TGATCA 1 cut(s) 934
BcnI CCSGG 1 cut(s) 80
BcoDI GTCTC 3 cut(s) 136, 190, 898
BcuI ACTAGT 1 cut(s) 95
BfaI CTAG 2 cut(s) 96, 750
BfoI RGCGCY 2 cut(s) 336, 439
BfrI CTTAAG 2 cut(s) 163, 473
BfuAI ACCTGC 1 cut(s) 1036
BisI GCNGC 8 cut(s) 276, 318, 412, 434, 651, 747, 888, 1050
BlsI GCNGC 8 cut(s) 277, 319, 413, 435, 652, 748, 889, 1051
Bme1390I CCNGG 1 cut(s) 80
Bme18I GGWCC 2 cut(s) 298, 991
BmeT110I CYCGRG 2 cut(s) 356, 439
BmgT120I GGNCC 3 cut(s) 298, 919, 991
BmiI GGNNCC 3 cut(s) 84, 300, 334
BmrFI CCNGG 1 cut(s) 80
BmsI GCATC 1 cut(s) 1006
BplI GAGNNNNNCTC 2 cut(s) 329, 361
Bpu10I CCTNAGC 2 cut(s) 564, 891
BpuMI CCSGG 1 cut(s) 80
BsaBI GATNNNNATC 2 cut(s) 251, 933
BsaHI GRCGYC 1 cut(s) 333
BsaJI CCNNGG 6 cut(s) 44, 336, 456, 576, 864, 922
BsaWI WCCGGW 5 cut(s) 5, 185, 192, 502, 554
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 192
Bse118I RCCGGY 3 cut(s) 5, 329, 554
Bse1I ACTGG 1 cut(s) 994
Bse8I GATNNNNATC 2 cut(s) 251, 933
BseAI TCCGGA 1 cut(s) 192
BseDI CCNNGG 6 cut(s) 44, 336, 456, 576, 864, 922
BseGI GGATG 5 cut(s) 75, 646, 880, 955, 1018
BseJI GATNNNNATC 2 cut(s) 251, 933
BseLI CCNNNNNNNGG 2 cut(s) 135, 192
BseMII CTCAG 4 cut(s) 461, 555, 905, 975
BseNI ACTGG 1 cut(s) 994
BseRI GAGGAG 3 cut(s) 313, 677, 686
BseXI GCAGC 6 cut(s) 304, 398, 662, 733, 874, 1036
Bsh1236I CGCG 1 cut(s) 46
Bsh1285I CGRYCG 2 cut(s) 44, 738
BshFI GGCC 6 cut(s) 61, 119, 713, 863, 921, 982
BshNI GGYRCC 1 cut(s) 332
BshTI ACCGGT 2 cut(s) 5, 554
BsiEI CGRYCG 2 cut(s) 44, 738
BsiHKAI GWGCWC 2 cut(s) 448, 510
BsiHKCI CYCGRG 2 cut(s) 356, 439
BsiSI CCGG 7 cut(s) 6, 80, 186, 193, 330, 503, 555
BslFI GGGAC 2 cut(s) 112, 151
BslI CCNNNNNNNGG 2 cut(s) 135, 192
BsmAI GTCTC 3 cut(s) 136, 190, 898
BsmFI GGGAC 2 cut(s) 112, 151
BsnI GGCC 6 cut(s) 61, 119, 713, 863, 921, 982
BsoBI CYCGRG 2 cut(s) 356, 439
Bsp1286I GDGCHC 2 cut(s) 448, 510
Bsp13I TCCGGA 1 cut(s) 192
Bsp143I GATC 7 cut(s) 214, 265, 279, 378, 405, 879, 934
BspACI CCGC 7 cut(s) 44, 46, 71, 275, 315, 327, 433
BspANI GGCC 6 cut(s) 61, 119, 713, 863, 921, 982
BspCNI CTCAG 4 cut(s) 460, 556, 904, 976
BspEI TCCGGA 1 cut(s) 192
BspFNI CGCG 1 cut(s) 46
BspLI GGNNCC 3 cut(s) 84, 300, 334
BspMI ACCTGC 1 cut(s) 1036
BspPI GGATC 4 cut(s) 222, 273, 373, 874
BspT107I GGYRCC 1 cut(s) 332
BspTI CTTAAG 2 cut(s) 163, 473
BsrFI RCCGGY 3 cut(s) 5, 329, 554
BsrI ACTGG 1 cut(s) 994
BssAI RCCGGY 3 cut(s) 5, 329, 554
BssECI CCNNGG 6 cut(s) 44, 336, 456, 576, 864, 922
BssMI GATC 7 cut(s) 214, 265, 279, 378, 405, 879, 934
BssNI GRCGYC 1 cut(s) 333
BssT1I CCWWGG 3 cut(s) 456, 576, 922
Bst4CI ACNGT 2 cut(s) 201, 493
Bst6I CTCTTC 1 cut(s) 896
BstACI GRCGYC 1 cut(s) 333
BstAFI CTTAAG 2 cut(s) 163, 473
BstC8I GCNNGC 4 cut(s) 331, 548, 604, 1033
BstDEI CTNAG 4 cut(s) 447, 564, 891, 984
BstDSI CCRYGG 2 cut(s) 44, 864
BstF5I GGATG 5 cut(s) 75, 646, 880, 955, 1018
BstFNI CGCG 1 cut(s) 46
BstH2I RGCGCY 2 cut(s) 336, 439
BstHHI GCGC 2 cut(s) 335, 438
BstKTI GATC 7 cut(s) 217, 268, 282, 381, 408, 882, 937
BstMAI GTCTC 3 cut(s) 136, 190, 898
BstMBI GATC 7 cut(s) 214, 265, 279, 378, 405, 879, 934
BstMCI CGRYCG 2 cut(s) 44, 738
BstMWI GCNNNNNNNGC 8 cut(s) 58, 165, 317, 326, 341, 475, 593, 844
BstSCI CCNGG 1 cut(s) 78
BstUI CGCG 1 cut(s) 46
BstV1I GCAGC 6 cut(s) 304, 398, 662, 733, 874, 1036
BstX2I RGATCY 2 cut(s) 265, 879
BstXI CCANNNNNNTGG 1 cut(s) 583
BstYI RGATCY 2 cut(s) 265, 879
BsuRI GGCC 6 cut(s) 61, 119, 713, 863, 921, 982
BtgI CCRYGG 2 cut(s) 44, 864
BtgZI GCGATG 1 cut(s) 236
BtsCI GGATG 5 cut(s) 75, 646, 880, 955, 1018
BtsI GCAGTG 2 cut(s) 957, 1044
BtsIMutI CAGTG 3 cut(s) 921, 957, 1044
BveI ACCTGC 1 cut(s) 1036
Cac8I GCNNGC 4 cut(s) 331, 548, 604, 1033
CfoI GCGC 2 cut(s) 335, 438
Cfr10I RCCGGY 3 cut(s) 5, 329, 554
Cfr13I GGNCC 3 cut(s) 298, 919, 991
Cfr42I CCGCGG 1 cut(s) 47
CseI GACGC 1 cut(s) 403
Csp6I GTAC 2 cut(s) 9, 558
CspAI ACCGGT 2 cut(s) 5, 554
CviAII CATG 2 cut(s) 792, 963
CviQI GTAC 2 cut(s) 9, 558
DdeI CTNAG 4 cut(s) 447, 564, 891, 984
DinI GGCGCC 1 cut(s) 334
DpnI GATC 7 cut(s) 216, 267, 281, 380, 407, 881, 936
DpnII GATC 7 cut(s) 214, 265, 279, 378, 405, 879, 934
DraI TTTAAA 1 cut(s) 106
EaeI YGGCCR 2 cut(s) 711, 861
Eam1104I CTCTTC 1 cut(s) 896
EarI CTCTTC 1 cut(s) 896
EciI GGCGGA 1 cut(s) 316
Ecl136II GAGCTC 1 cut(s) 508
Eco130I CCWWGG 3 cut(s) 456, 576, 922
Eco24I GRGCYC 1 cut(s) 510
Eco47I GGWCC 2 cut(s) 298, 991
Eco53kI GAGCTC 1 cut(s) 508
Eco57I CTGAAG 1 cut(s) 609
Eco88I CYCGRG 2 cut(s) 356, 439
EcoICRI GAGCTC 1 cut(s) 508
EcoT14I CCWWGG 3 cut(s) 456, 576, 922
EcoT22I ATGCAT 1 cut(s) 944
EcoT38I GRGCYC 1 cut(s) 510
EgeI GGCGCC 1 cut(s) 334
EheI GGCGCC 1 cut(s) 334
ErhI CCWWGG 3 cut(s) 456, 576, 922
FaeI CATG 2 cut(s) 795, 966
FalI AAGNNNNNCTT 2 cut(s) 780, 812
FaqI GGGAC 2 cut(s) 112, 151
FatI CATG 2 cut(s) 791, 962
FauI CCCGC 1 cut(s) 78
FauNDI CATATG 1 cut(s) 718
FbaI TGATCA 1 cut(s) 934
FblI GTMKAC 1 cut(s) 230
Fnu4HI GCNGC 8 cut(s) 276, 318, 412, 434, 651, 747, 888, 1050
FokI GGATG 5 cut(s) 62, 653, 887, 962, 1025
FriOI GRGCYC 1 cut(s) 510
Fsp4HI GCNGC 8 cut(s) 276, 318, 412, 434, 651, 747, 888, 1050
FspBI CTAG 2 cut(s) 96, 750
GlaI GCGC 2 cut(s) 334, 437
GluI GCNGC 8 cut(s) 276, 318, 412, 434, 651, 747, 888, 1050
HaeII RGCGCY 2 cut(s) 336, 439
HaeIII GGCC 6 cut(s) 61, 119, 713, 863, 921, 982
HapII CCGG 7 cut(s) 6, 80, 186, 193, 330, 503, 555
HgaI GACGC 1 cut(s) 403
HhaI GCGC 2 cut(s) 335, 438
Hin1I GRCGYC 1 cut(s) 333
Hin1II CATG 2 cut(s) 795, 966
Hin6I GCGC 2 cut(s) 333, 436
HinP1I GCGC 2 cut(s) 333, 436
HincII GTYRAC 1 cut(s) 231
HindII GTYRAC 1 cut(s) 231
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 5 cut(s) 189, 208, 227, 361, 971
HpaII CCGG 7 cut(s) 6, 80, 186, 193, 330, 503, 555
HphI GGTGA 3 cut(s) 481, 734, 740
Hpy166II GTNNAC 2 cut(s) 231, 768
Hpy188I TCNGA 3 cut(s) 238, 270, 450
Hpy188III TCNNGA 7 cut(s) 193, 212, 356, 358, 365, 385, 1004
Hpy8I GTNNAC 2 cut(s) 231, 768
Hpy99I CGWCG 3 cut(s) 419, 422, 515
HpyAV CCTTC 1 cut(s) 520
HpyCH4III ACNGT 2 cut(s) 201, 493
HpyCH4V TGCA 5 cut(s) 159, 942, 962, 1019, 1035
HpyF10VI GCNNNNNNNGC 8 cut(s) 58, 165, 317, 326, 341, 475, 593, 844
HpyF3I CTNAG 4 cut(s) 447, 564, 891, 984
Hsp92I GRCGYC 1 cut(s) 333
Hsp92II CATG 2 cut(s) 795, 966
HspAI GCGC 2 cut(s) 333, 436
KasI GGCGCC 1 cut(s) 332
Kpn2I TCCGGA 1 cut(s) 192
KroI GCCGGC 1 cut(s) 329
KroNI GCCGGC 1 cut(s) 331
Ksp22I TGATCA 1 cut(s) 934
KspI CCGCGG 1 cut(s) 47
Kzo9I GATC 7 cut(s) 214, 265, 279, 378, 405, 879, 934
LmnI GCTCC 1 cut(s) 505
Lsp1109I GCAGC 6 cut(s) 304, 398, 662, 733, 874, 1036
LweI GCATC 1 cut(s) 1006
MaeI CTAG 2 cut(s) 96, 750
MaeIII GTNAC 2 cut(s) 529, 616
MalI GATC 7 cut(s) 216, 267, 281, 380, 407, 881, 936
MboI GATC 7 cut(s) 214, 265, 279, 378, 405, 879, 934
MboII GAAGA 7 cut(s) 274, 529, 532, 602, 697, 797, 913
MflI RGATCY 2 cut(s) 265, 879
MhlI GDGCHC 2 cut(s) 448, 510
MlsI TGGCCA 1 cut(s) 713
MluCI AATT 2 cut(s) 677, 699
MluNI TGGCCA 1 cut(s) 713
Mly113I GGCGCC 1 cut(s) 333
MlyI GAGTC 2 cut(s) 236, 980
MmeI TCCRAC 3 cut(s) 243, 330, 969
Mox20I TGGCCA 1 cut(s) 713
Mph1103I ATGCAT 1 cut(s) 944
MreI CGCCGGCG 1 cut(s) 329
MroI TCCGGA 1 cut(s) 192
MroNI GCCGGC 1 cut(s) 329
MscI TGGCCA 1 cut(s) 713
MseI TTAA 4 cut(s) 56, 105, 164, 474
MslI CAYNNNNRTG 1 cut(s) 491
Msp20I TGGCCA 1 cut(s) 713
MspA1I CMGCKG 2 cut(s) 46, 317
MspCI CTTAAG 2 cut(s) 163, 473
MspI CCGG 7 cut(s) 6, 80, 186, 193, 330, 503, 555
MspR9I CCNGG 1 cut(s) 80
MvnI CGCG 1 cut(s) 46
MwoI GCNNNNNNNGC 8 cut(s) 58, 165, 317, 326, 341, 475, 593, 844
NaeI GCCGGC 1 cut(s) 331
NarI GGCGCC 1 cut(s) 333
NciI CCSGG 1 cut(s) 80
NdeI CATATG 1 cut(s) 718
NdeII GATC 7 cut(s) 214, 265, 279, 378, 405, 879, 934
NgoMIV GCCGGC 1 cut(s) 329
NlaIII CATG 2 cut(s) 795, 966
NlaIV GGNNCC 3 cut(s) 84, 300, 334
NmeAIII GCCGAG 1 cut(s) 361
NmuCI GTSAC 2 cut(s) 529, 616
NsiI ATGCAT 1 cut(s) 944
PaeR7I CTCGAG 2 cut(s) 356, 439
PaqCI CACCTGC 1 cut(s) 1036
PcsI WCGNNNNNNNCGW 1 cut(s) 414
PdiI GCCGGC 1 cut(s) 331
PfeI GAWTC 3 cut(s) 189, 208, 361
PinAI ACCGGT 2 cut(s) 5, 554
PkrI GCNGC 8 cut(s) 277, 319, 413, 435, 652, 748, 889, 1051
PleI GAGTC 2 cut(s) 235, 979
PluTI GGCGCC 1 cut(s) 336
PpsI GAGTC 2 cut(s) 235, 979
PsiI TTATAA 1 cut(s) 152
Psp124BI GAGCTC 1 cut(s) 510
PspN4I GGNNCC 3 cut(s) 84, 300, 334
PspPI GGNCC 3 cut(s) 298, 919, 991
PspXI VCTCGAGB 1 cut(s) 439
PsuI RGATCY 2 cut(s) 265, 879
RsaI GTAC 2 cut(s) 10, 559
RsaNI GTAC 2 cut(s) 9, 558
RseI CAYNNNNRTG 1 cut(s) 491
SacI GAGCTC 1 cut(s) 510
SacII CCGCGG 1 cut(s) 47
SalI GTCGAC 1 cut(s) 229
SaqAI TTAA 4 cut(s) 56, 105, 164, 474
SatI GCNGC 8 cut(s) 276, 318, 412, 434, 651, 747, 888, 1050
Sau3AI GATC 7 cut(s) 214, 265, 279, 378, 405, 879, 934
Sau96I GGNCC 3 cut(s) 298, 919, 991
SchI GAGTC 2 cut(s) 236, 980
ScrFI CCNGG 1 cut(s) 80
SduI GDGCHC 2 cut(s) 448, 510
SfaNI GCATC 1 cut(s) 1006
SfoI GGCGCC 1 cut(s) 334
Sfr274I CTCGAG 2 cut(s) 356, 439
Sfr303I CCGCGG 1 cut(s) 47
SgrAI CRCCGGYG 1 cut(s) 329
SgrBI CCGCGG 1 cut(s) 47
SinI GGWCC 2 cut(s) 298, 991
SlaI CTCGAG 2 cut(s) 356, 439
SmiMI CAYNNNNRTG 1 cut(s) 491
SmlI CTYRAG 4 cut(s) 163, 356, 439, 473
SmoI CTYRAG 4 cut(s) 163, 356, 439, 473
SpeI ACTAGT 1 cut(s) 95
Sse9I AATT 2 cut(s) 677, 699
SsiI CCGC 7 cut(s) 44, 46, 71, 275, 315, 327, 433
SspDI GGCGCC 1 cut(s) 332
SspMI CTAG 2 cut(s) 96, 750
SstI GAGCTC 1 cut(s) 510
StyD4I CCNGG 1 cut(s) 78
StyI CCWWGG 3 cut(s) 456, 576, 922
TaaI ACNGT 2 cut(s) 201, 493
TaqI TCGA 8 cut(s) 230, 245, 357, 392, 440, 510, 974, 1003
TaqII GACCGA 1 cut(s) 752
TasI AATT 2 cut(s) 677, 699
TauI GCSGC 2 cut(s) 278, 436
TfiI GAWTC 3 cut(s) 189, 208, 361
Tru1I TTAA 4 cut(s) 56, 105, 164, 474
Tru9I TTAA 4 cut(s) 56, 105, 164, 474
TscAI CASTG 3 cut(s) 921, 964, 1051
TseFI GTSAC 2 cut(s) 529, 616
TseI GCWGC 6 cut(s) 317, 411, 650, 746, 887, 1049
Tsp45I GTSAC 2 cut(s) 529, 616
TspDTI ATGAA 3 cut(s) 263, 624, 797
TspGWI ACGGA 2 cut(s) 337, 828
TspRI CASTG 3 cut(s) 921, 964, 1051
Vha464I CTTAAG 2 cut(s) 163, 473
VpaK11BI GGWCC 2 cut(s) 298, 991
XhoI CTCGAG 2 cut(s) 356, 439
XmiI GTMKAC 1 cut(s) 230
XspI CTAG 2 cut(s) 96, 750
Zsp2I ATGCAT 1 cut(s) 944
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.