Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002068

Physical Location & Seq

Genomic Coordinates Forward (+)

27898163 .. 27902494

Gene Structure 4332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00022590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGCTCAGTGTTCTGGTCATGGTCCAAAGAAAAGATGTTTGGACTTGTTTTTCTTTATCTCTTGATTGGTCTGAAGACCTTGAACTTGCTCTTGAAGCCAAGTTCAACATGGGAATAACACTGAATTCCTTTCCAAGAAAAGTTCGGCACAAGAATGTCGTTCAATTCATTGGGGCAAGAGCACCTTGTATTTTCTACCTTACAGTATCTGCAAGAGCTTTATCTGAGAATTCTTTGCCTTTGACAAAAAGTGATGGTTGTAGTTGGGCACCCATTTTTGTTCGGCAATCAAACTTCAGATTTCCCGTTGATACTAAAGTACCCATTATCATGATTGGTCTTGGAACTAGATTTTCTCCTTTCAGGGATTTCTTGCAGGAAAGATTAGCTCTTACAGAAGATGGAGCAGAACTTGGACCCTCCGTATTATTCTTTGGATGCAGAAATAGTCAAATGGACTACAATTACGAAGATGAGCTGAACAACTTCGTAGAAAAAGGTGCACTTTCTGAGCTTGTGGTTGCATTCTCCTGCCAGGGACCCACCAAGGAATATGTGCAACATAAAATGATGCAGAAGTGTTCAGGCTTCCGACATCTGGAACATGCTATCTCAAGGAGGTTATATTTATGTTTGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003958 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009698 GO:0009987 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0019748 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

213

Amino Acids

24.41

Weight (kDa)

8.16

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_1	PF00175	111 - 196	1e-06	Oxidoreductase NAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30210 AT4G30210 AT4G30210
fragaria_vesca	FvH4_4g08180
malus_domestica	MD13G1253300.v1.1 MD16G1257600.v1.1
prunus_persica	Prupe.1G085400_v2.0.a1
pyrus_communis	pycom12480g00040 pycom13g22470
rosa_chinensis	RchiOBHm_Chr1g0334331 RchiOBHm_Chr4g0402381 RchiOBHm_Chr4g0402391 RchiOBHm_Chr4g0419591 RchiOBHm_Chr7g0226121
rosa_laevigata	RLG00000009089 RLG00000009093 RLG00000009097 RLG00000009098
rosa_multiflora	Rmu_co8074388.1_g000001 Rmu_sc0002660.1_g000001 Rmu_sc0023635.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022590 Rroxscaffold_5G00347040 Rroxscaffold_5G00347050
rosa_rugosa	Rorug03G0293000 Rorug04G0034500 Rorug04G0034500 Rorug04G0034600 Rorug04G0034700 Rorug04G0034800 Rorug04G0034900 Rorug04G0035000 Rorug05G0246500
rosa_samantha	Rh4AG112500 Rh4AG112600 Rh4BG105000 Rh4BG105100 Rh4CG004400 Rh4CG119300 Rh4CG119400 Rh4DG104000 Rh4DG104100 Rh5AG337100
rosa_wichuraiana	Rw4G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	268
AcsI	RAATTY	2 cut(s)	124, 229
AcuI	CTGAAG	2 cut(s)	93, 280
AfaI	GTAC	1 cut(s)	321
AfiI	CCNNNNNNNGG	1 cut(s)	598
AgsI	TTSAA	4 cut(s)	83, 95, 106, 164
AjnI	CCWGG	1 cut(s)	534
AjuI	GAANNNNNNNTTGG	2 cut(s)	22, 54
AluBI	AGCT	4 cut(s)	218, 389, 478, 514
AluI	AGCT	4 cut(s)	218, 389, 478, 514
Alw21I	GWGCWC	2 cut(s)	184, 505
Alw44I	GTGCAC	1 cut(s)	501
AlwNI	CAGNNNCTG	1 cut(s)	209
ApaLI	GTGCAC	1 cut(s)	501
ApoI	RAATTY	2 cut(s)	124, 229
Asp700I	GAANNNNTTC	1 cut(s)	485
AspS9I	GGNCC	3 cut(s)	22, 416, 539
AvaII	GGWCC	3 cut(s)	22, 416, 539
BaeGI	GKGCMC	2 cut(s)	271, 505
BaeI	ACNNNNGTAYC	4 cut(s)	303, 303, 336, 336
BanI	GGYRCC	1 cut(s)	268
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	2 cut(s)	184, 505
BccI	CCATC	2 cut(s)	248, 395
BciT130I	CCWGG	1 cut(s)	536
BfaI	CTAG	1 cut(s)	348
Bme1390I	CCNGG	1 cut(s)	536
Bme18I	GGWCC	3 cut(s)	22, 416, 539
BmgT120I	GGNCC	3 cut(s)	22, 416, 539
BmiI	GGNNCC	4 cut(s)	270, 418, 540, 541
BmrFI	CCNGG	1 cut(s)	536
BmsI	GCATC	2 cut(s)	428, 561
BpiI	GAAGAC	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	598
BsaJI	CCNNGG	2 cut(s)	535, 546
Bsc4I	CCNNNNNNNGG	1 cut(s)	598
BseBI	CCWGG	1 cut(s)	536
BseDI	CCNNGG	2 cut(s)	535, 546
BseGI	GGATG	1 cut(s)	443
BseLI	CCNNNNNNNGG	1 cut(s)	598
BseMII	CTCAG	3 cut(s)	19, 216, 501
BseSI	GKGCMC	2 cut(s)	271, 505
BshNI	GGYRCC	1 cut(s)	268
BsiHKAI	GWGCWC	2 cut(s)	184, 505
BslFI	GGGAC	1 cut(s)	552
BslI	CCNNNNNNNGG	1 cut(s)	598
BsmFI	GGGAC	1 cut(s)	552
BsmI	GAATGC	1 cut(s)	524
Bsp1286I	GDGCHC	3 cut(s)	184, 271, 505
BspCNI	CTCAG	3 cut(s)	18, 217, 502
BspHI	TCATGA	1 cut(s)	330
BspLI	GGNNCC	4 cut(s)	270, 418, 540, 541
BspT107I	GGYRCC	1 cut(s)	268
BssECI	CCNNGG	2 cut(s)	535, 546
BssT1I	CCWWGG	1 cut(s)	546
Bst2UI	CCWGG	1 cut(s)	536
Bst4CI	ACNGT	1 cut(s)	205
BstDEI	CTNAG	3 cut(s)	5, 225, 510
BstF5I	GGATG	1 cut(s)	443
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	1 cut(s)	536
BstNSI	RCATGY	1 cut(s)	608
BstSCI	CCNGG	1 cut(s)	534
BstSLI	GKGCMC	2 cut(s)	271, 505
BstV2I	GAAGAC	1 cut(s)	81
BtsCI	GGATG	1 cut(s)	443
BtsIMutI	CAGTG	2 cut(s)	13, 119
CaiI	CAGNNNCTG	1 cut(s)	209
CciI	TCATGA	1 cut(s)	330
Cfr13I	GGNCC	3 cut(s)	22, 416, 539
Csp6I	GTAC	1 cut(s)	320
CviAII	CATG	4 cut(s)	19, 109, 331, 605
CviJI	RGCY	6 cut(s)	98, 218, 389, 478, 514, 588
CviKI_1	RGCY	6 cut(s)	98, 218, 389, 478, 514, 588
CviQI	GTAC	1 cut(s)	320
DdeI	CTNAG	3 cut(s)	5, 225, 510
Eco130I	CCWWGG	1 cut(s)	546
Eco47I	GGWCC	3 cut(s)	22, 416, 539
Eco57I	CTGAAG	2 cut(s)	93, 280
EcoO109I	RGGNCCY	1 cut(s)	539
EcoRI	GAATTC	2 cut(s)	124, 229
EcoRII	CCWGG	1 cut(s)	534
EcoT14I	CCWWGG	1 cut(s)	546
ErhI	CCWWGG	1 cut(s)	546
FaeI	CATG	4 cut(s)	22, 112, 334, 608
FaiI	YATR	8 cut(s)	20, 110, 332, 555, 564, 606, 625, 631
FalI	AAGNNNNNCTT	4 cut(s)	169, 201, 489, 521
FaqI	GGGAC	1 cut(s)	552
FatI	CATG	4 cut(s)	18, 108, 330, 604
FokI	GGATG	1 cut(s)	450
FspBI	CTAG	1 cut(s)	348
Hin1II	CATG	4 cut(s)	22, 112, 334, 608
Hpy166II	GTNNAC	1 cut(s)	503
Hpy188I	TCNGA	5 cut(s)	73, 226, 299, 511, 593
Hpy188III	TCNNGA	4 cut(s)	62, 92, 331, 599
Hpy8I	GTNNAC	1 cut(s)	503
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	7 cut(s)	212, 376, 441, 503, 524, 559, 574
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	3 cut(s)	5, 225, 510
Hsp92II	CATG	4 cut(s)	22, 112, 334, 608
KflI	GGGWCCC	1 cut(s)	539
LmnI	GCTCC	1 cut(s)	404
LpnPI	CCDG	7 cut(s)	349, 362, 521, 544, 548, 570, 584
LweI	GCATC	2 cut(s)	428, 561
MaeI	CTAG	1 cut(s)	348
MboII	GAAGA	3 cut(s)	86, 410, 482
MhlI	GDGCHC	3 cut(s)	184, 271, 505
MluCI	AATT	4 cut(s)	124, 164, 229, 463
MmeI	TCCRAC	1 cut(s)	616
MnlI	CCTC	2 cut(s)	430, 612
MroXI	GAANNNNTTC	1 cut(s)	485
MslI	CAYNNNNRTG	2 cut(s)	153, 329
MspR9I	CCNGG	1 cut(s)	536
Mva1269I	GAATGC	1 cut(s)	524
MvaI	CCWGG	1 cut(s)	536
MwoI	GCNNNNNNNGC	1 cut(s)	95
NlaIII	CATG	4 cut(s)	22, 112, 334, 608
NlaIV	GGNNCC	4 cut(s)	270, 418, 540, 541
NspI	RCATGY	1 cut(s)	608
PagI	TCATGA	1 cut(s)	330
PctI	GAATGC	1 cut(s)	524
PdmI	GAANNNNTTC	1 cut(s)	485
PpuMI	RGGWCCY	1 cut(s)	539
Psp5II	RGGWCCY	1 cut(s)	539
Psp6I	CCWGG	1 cut(s)	534
PspGI	CCWGG	1 cut(s)	534
PspN4I	GGNNCC	4 cut(s)	270, 418, 540, 541
PspPI	GGNCC	3 cut(s)	22, 416, 539
PspPPI	RGGWCCY	1 cut(s)	539
PstNI	CAGNNNCTG	1 cut(s)	209
RsaI	GTAC	1 cut(s)	321
RsaNI	GTAC	1 cut(s)	320
RseI	CAYNNNNRTG	2 cut(s)	153, 329
Sau96I	GGNCC	3 cut(s)	22, 416, 539
ScrFI	CCNGG	1 cut(s)	536
SduI	GDGCHC	3 cut(s)	184, 271, 505
SetI	ASST	9 cut(s)	81, 187, 201, 220, 391, 480, 502, 516, 623
SfaNI	GCATC	2 cut(s)	428, 561
SinI	GGWCC	3 cut(s)	22, 416, 539
SmiMI	CAYNNNNRTG	2 cut(s)	153, 329
SmlI	CTYRAG	1 cut(s)	613
SmoI	CTYRAG	1 cut(s)	613
Sse9I	AATT	4 cut(s)	124, 164, 229, 463
SspMI	CTAG	1 cut(s)	348
StyD4I	CCNGG	1 cut(s)	534
StyI	CCWWGG	1 cut(s)	546
TaaI	ACNGT	1 cut(s)	205
TasI	AATT	4 cut(s)	124, 164, 229, 463
TscAI	CASTG	2 cut(s)	13, 126
TspDTI	ATGAA	1 cut(s)	157
TspGWI	ACGGA	1 cut(s)	412
TspRI	CASTG	2 cut(s)	13, 126
VneI	GTGCAC	1 cut(s)	501
VpaK11BI	GGWCC	3 cut(s)	22, 416, 539
XapI	RAATTY	2 cut(s)	124, 229
XceI	RCATGY	1 cut(s)	608
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
XmnI	GAANNNNTTC	1 cut(s)	485
XspI	CTAG	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.