Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002068

Physical Location & Seq

Genomic Coordinates Reverse (-)

5100595 .. 5106398

Gene Structure 5804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0034500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1581 bp

ATGAAAGAAGCGATGATGGCGTCAAATAAGGCCTCAAGTGACGACAACAGCGGAAGAATGAAGAGAAGAAGACTCAGAGAAATGTTTCCTGCCAACAAAGGCGAGACCAATGAATCAATTCATGTTAGTACCGGATTCTACATTAGTGTGTTTGAAGGTATGTCTTTGTTGAAGTCTGAAGTAGCTGCTATAAAGTCTGATGTGGGGAGGCTTAGATCAACGCTGGGATGTTTGGAACCCAATATTGAGACATTGAGACAAAAATTAATTGAAGTACAAGACTTAGCCTGTGAACTGAAAGTTGGTGGGATTGAAGGTATTGTTGGTGAGGTAATACATGTTGTGACAACAATGTGGCCAAACACCTTGCATAAGGTTGCTGAAAATGTTATACAACCCATGGATGAGAATGGTGAGCACAATTTGGTGGCTGACATTCGCAAGGAGTCACGAAAGAGGAAATTTTGTCTCAGCTCTCCATTATCATTGGACAGCCGTGTGAAGCACCGAATATGTGAGGAAATCCCTGCAAATGAGGTTGACCGTATGGAAGATAAGAGGATGACAGGAAAAGCAAAGGAAAAAAATGGCACGGTGGAAGAGGCTAAACATAGAAAAAGAAACAAGAAATTTCCGTTGATGGGAAAGATATCACGAAAGGATTCTAAGGTCTTAAAGTTCTTGTTTAGGAAGCCAAGAAGAGGACATAAGTCCAGGGATGAAGTTGCCTGCAGTGGAGAGTTTGGGGTTTCCCATGAGGATATCCAATGTCTTTGGCCGACAGTCCCAATTTCTTCCAAGGTCATAAACATTTGGACTGCGTACATGTCTCAGACCAAGTCCAACTCATGGTTCTTACCTACTTTCTTTGCGGAACAAGCCGGGTCAAATGAGGATCCATCCAATGTACCTGTTTCAATTGCATCAACAATAGTTGCTTGTGGGCTGCAGAGGTTCCATAGGCGGTTGAAGCATTGTGTTGAGATTTTCATCCCATTGTATGATGAAATCGCCGACCATTGGTTTTTGTTGGTTATGAAACTAAAGGAGAAAATTGCTGAGTTGTGGGATAGTGTGCCAGAATTCACATCATTGAATAGACGACTTGAGATAGCAAGAGCCACCATGCTTCTACTGCAGACGGTGTTTGGAAGTGCAATGACGAAGTCCTCAGATGCTTATTACAATTTTCCCTCATTTCGCCTCTCATTTCCAGAGGGTAACCAAACCACAGACAACAAATATGACAGCGGGATTTACATCATGATGCAGATGAAGTGTTATTCGGATAAGTGGTTTGAAGGCTATAATTCGGAAGAGATGCGGTCTGCACTTGCACTTGAAATTGTCAATAATTCGAGCAATGAATTATTGAAATCGGTGATGAGAGCTGTCATGAAAGGTGAAGGTTGCGGAGAAGGTATTTCTAATGCTGCGAAGGCCACAAAATCCAATGCGGAGGCCACACAGTCCAATGCTGTCGTTGCAACTGACTGTGACACAACTACAGACATTATCCATGAGAAGGTTCCTAACGGTCGGAAATGTCGCAGCCATCGCAGGAGAAAATCCCGAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003958 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009698 GO:0009987 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0019748 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

526

Amino Acids

59.57

Weight (kDa)

9.12

Isoelectric Point (pI)

51.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	282 - 430	8.2e-09	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30210 AT4G30210 AT4G30210
fragaria_vesca	FvH4_4g08180
malus_domestica	MD13G1253300.v1.1 MD16G1257600.v1.1
prunus_persica	Prupe.1G085400_v2.0.a1
pyrus_communis	pycom12480g00040 pycom13g22470
rosa_chinensis	RchiOBHm_Chr1g0334331 RchiOBHm_Chr4g0402381 RchiOBHm_Chr4g0402391 RchiOBHm_Chr4g0419591 RchiOBHm_Chr7g0226121
rosa_laevigata	RLG00000009089 RLG00000009093 RLG00000009097 RLG00000009098
rosa_multiflora	Rmu_co8074388.1_g000001 Rmu_sc0002660.1_g000001 Rmu_sc0023635.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022590 Rroxscaffold_5G00347040 Rroxscaffold_5G00347050
rosa_rugosa	Rorug03G0293000 Rorug04G0034500 Rorug04G0034500 Rorug04G0034600 Rorug04G0034700 Rorug04G0034800 Rorug04G0034900 Rorug04G0035000 Rorug05G0246500
rosa_samantha	Rh4AG112500 Rh4AG112600 Rh4BG105000 Rh4BG105100 Rh4CG004400 Rh4CG119300 Rh4CG119400 Rh4DG104000 Rh4DG104100 Rh5AG337100
rosa_wichuraiana	Rw4G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	849
AciI	CCGC	7 cut(s)	51, 872, 964, 1251, 1324, 1413, 1457
AclWI	GGATC	2 cut(s)	890, 903
AcoI	YGGCCR	2 cut(s)	356, 776
AcsI	RAATTY	3 cut(s)	461, 629, 1082
AcuI	CTGAAG	1 cut(s)	198
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	4 cut(s)	130, 276, 824, 909
AfiI	CCNNNNNNNGG	5 cut(s)	641, 701, 849, 1020, 1525
AflIII	ACRYGT	2 cut(s)	337, 825
AjnI	CCWGG	1 cut(s)	713
AjuI	GAANNNNNNNTTGG	6 cut(s)	285, 306, 317, 338, 836, 868
AluBI	AGCT	3 cut(s)	185, 474, 1391
AluI	AGCT	3 cut(s)	185, 474, 1391
Alw21I	GWGCWC	1 cut(s)	420
Alw26I	GTCTC	5 cut(s)	98, 242, 250, 473, 834
AlwI	GGATC	2 cut(s)	890, 903
Ama87I	CYCGRG	1 cut(s)	1572
AoxI	GGCC	5 cut(s)	30, 356, 776, 1440, 1461
ApeKI	GCWGC	4 cut(s)	185, 946, 1433, 1551
ApoI	RAATTY	3 cut(s)	461, 629, 1082
AseI	ATTAAT	1 cut(s)	266
Asp700I	GAANNNNTTC	3 cut(s)	84, 117, 661
AsuC2I	CCSGG	1 cut(s)	883
AsuHPI	GGTGA	4 cut(s)	338, 425, 1393, 1415
AvaI	CYCGRG	1 cut(s)	1572
BalI	TGGCCA	1 cut(s)	358
BamHI	GGATCC	1 cut(s)	895
BbsI	GAAGAC	1 cut(s)	76
Bbv12I	GWGCWC	1 cut(s)	420
BbvI	GCAGC	4 cut(s)	172, 933, 1420, 1563
BccI	CCATC	4 cut(s)	10, 634, 907, 1563
BceAI	ACGGC	1 cut(s)	480
BciT130I	CCWGG	1 cut(s)	715
BcnI	CCSGG	1 cut(s)	883
BcoDI	GTCTC	5 cut(s)	98, 242, 250, 473, 834
BfmI	CTRYAG	4 cut(s)	730, 947, 1136, 1506
BisI	GCNGC	4 cut(s)	186, 947, 1434, 1552
BlsI	GCNGC	4 cut(s)	187, 948, 1435, 1553
Bme1390I	CCNGG	2 cut(s)	715, 883
BmeT110I	CYCGRG	1 cut(s)	1572
BmiI	GGNNCC	4 cut(s)	237, 897, 956, 1530
BmrFI	CCNGG	2 cut(s)	715, 883
BmsI	GCATC	4 cut(s)	932, 1165, 1257, 1311
BoxI	GACNNNNGTC	1 cut(s)	709
BpiI	GAAGAC	1 cut(s)	76
BpuEI	CTTGAG	2 cut(s)	19, 1127
BpuMI	CCSGG	1 cut(s)	883
BsaBI	GATNNNNATC	2 cut(s)	989, 1259
BsaHI	GRCGYC	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	98
BsaJI	CCNNGG	3 cut(s)	399, 714, 798
BsaWI	WCCGGW	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	5 cut(s)	641, 701, 849, 1020, 1525
Bse3DI	GCAATG	2 cut(s)	1164, 1369
Bse8I	GATNNNNATC	2 cut(s)	989, 1259
BseBI	CCWGG	1 cut(s)	715
BseDI	CCNNGG	3 cut(s)	399, 714, 798
BseGI	GGATG	6 cut(s)	233, 409, 567, 724, 899, 990
BseJI	GATNNNNATC	2 cut(s)	989, 1259
BseLI	CCNNNNNNNGG	5 cut(s)	641, 701, 849, 1020, 1525
BseMI	GCAATG	2 cut(s)	1164, 1369
BseMII	CTCAG	5 cut(s)	88, 484, 845, 1050, 1185
BseXI	GCAGC	4 cut(s)	172, 933, 1420, 1563
BseYI	CCCAGC	1 cut(s)	223
BsgI	GTGCAG	1 cut(s)	1314
Bsh1285I	CGRYCG	1 cut(s)	1540
BshFI	GGCC	5 cut(s)	32, 358, 778, 1442, 1463
BsiEI	CGRYCG	1 cut(s)	1540
BsiHKAI	GWGCWC	1 cut(s)	420
BsiHKCI	CYCGRG	1 cut(s)	1572
BsiSI	CCGG	2 cut(s)	132, 882
BslFI	GGGAC	1 cut(s)	770
BslI	CCNNNNNNNGG	5 cut(s)	641, 701, 849, 1020, 1525
BsmAI	GTCTC	5 cut(s)	98, 242, 250, 473, 834
BsmFI	GGGAC	1 cut(s)	770
BsnI	GGCC	5 cut(s)	32, 358, 778, 1442, 1463
Bso31I	GGTCTC	1 cut(s)	98
BsoBI	CYCGRG	1 cut(s)	1572
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp143I	GATC	2 cut(s)	215, 895
Bsp19I	CCATGG	1 cut(s)	399
BspACI	CCGC	7 cut(s)	51, 872, 964, 1251, 1324, 1413, 1457
BspANI	GGCC	5 cut(s)	32, 358, 778, 1442, 1463
BspCNI	CTCAG	5 cut(s)	87, 483, 844, 1051, 1184
BspHI	TCATGA	2 cut(s)	1263, 1395
BspLI	GGNNCC	4 cut(s)	237, 897, 956, 1530
BspMAI	CTGCAG	3 cut(s)	734, 951, 1140
BspPI	GGATC	2 cut(s)	890, 903
BspTNI	GGTCTC	1 cut(s)	98
BsrDI	GCAATG	2 cut(s)	1164, 1369
BssECI	CCNNGG	3 cut(s)	399, 714, 798
BssMI	GATC	2 cut(s)	215, 895
BssNI	GRCGYC	1 cut(s)	20
BssT1I	CCWWGG	2 cut(s)	399, 798
Bst2UI	CCWGG	1 cut(s)	715
Bst4CI	ACNGT	7 cut(s)	545, 595, 784, 1144, 1470, 1496, 1538
Bst6I	CTCTTC	4 cut(s)	56, 594, 694, 1311
BstACI	GRCGYC	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	730
BstDEI	CTNAG	8 cut(s)	74, 212, 283, 470, 666, 831, 1059, 1171
BstDSI	CCRYGG	1 cut(s)	399
BstEII	GGTNACC	1 cut(s)	1220
BstF5I	GGATG	6 cut(s)	233, 409, 567, 724, 899, 990
BstKTI	GATC	2 cut(s)	218, 898
BstMAI	GTCTC	5 cut(s)	98, 242, 250, 473, 834
BstMBI	GATC	2 cut(s)	215, 895
BstMCI	CGRYCG	1 cut(s)	1540
BstMWI	GCNNNNNNNGC	7 cut(s)	17, 878, 970, 1135, 1439, 1484, 1557
BstNI	CCWGG	1 cut(s)	715
BstNSI	RCATGY	2 cut(s)	341, 829
BstPAI	GACNNNNGTC	1 cut(s)	709
BstPI	GGTNACC	1 cut(s)	1220
BstSCI	CCNGG	2 cut(s)	713, 881
BstSFI	CTRYAG	4 cut(s)	730, 947, 1136, 1506
BstV1I	GCAGC	4 cut(s)	172, 933, 1420, 1563
BstV2I	GAAGAC	1 cut(s)	76
BstX2I	RGATCY	1 cut(s)	895
BstYI	RGATCY	1 cut(s)	895
BsuRI	GGCC	5 cut(s)	32, 358, 778, 1442, 1463
BtgI	CCRYGG	1 cut(s)	399
BtgZI	GCGATG	2 cut(s)	26, 1541
BtsCI	GGATG	6 cut(s)	233, 409, 567, 724, 899, 990
BtsI	GCAGTG	1 cut(s)	739
BtsIMutI	CAGTG	1 cut(s)	739
Cac8I	GCNNGC	1 cut(s)	730
CciI	TCATGA	2 cut(s)	1263, 1395
CseI	GACGC	1 cut(s)	9
Csp6I	GTAC	4 cut(s)	129, 275, 823, 908
CviQI	GTAC	4 cut(s)	129, 275, 823, 908
DdeI	CTNAG	8 cut(s)	74, 212, 283, 470, 666, 831, 1059, 1171
DpnI	GATC	2 cut(s)	217, 897
DpnII	GATC	2 cut(s)	215, 895
EaeI	YGGCCR	2 cut(s)	356, 776
Eam1104I	CTCTTC	4 cut(s)	56, 594, 694, 1311
EarI	CTCTTC	4 cut(s)	56, 594, 694, 1311
Eco130I	CCWWGG	2 cut(s)	399, 798
Eco147I	AGGCCT	1 cut(s)	32
Eco31I	GGTCTC	1 cut(s)	98
Eco32I	GATATC	2 cut(s)	651, 763
Eco57I	CTGAAG	1 cut(s)	198
Eco88I	CYCGRG	1 cut(s)	1572
Eco91I	GGTNACC	1 cut(s)	1220
EcoO65I	GGTNACC	1 cut(s)	1220
EcoRI	GAATTC	1 cut(s)	1082
EcoRII	CCWGG	1 cut(s)	713
EcoRV	GATATC	2 cut(s)	651, 763
EcoT14I	CCWWGG	2 cut(s)	399, 798
ErhI	CCWWGG	2 cut(s)	399, 798
FaqI	GGGAC	1 cut(s)	770
FauI	CCCGC	1 cut(s)	1244
Fnu4HI	GCNGC	4 cut(s)	186, 947, 1434, 1552
FokI	GGATG	6 cut(s)	240, 416, 574, 731, 886, 977
Fsp4HI	GCNGC	4 cut(s)	186, 947, 1434, 1552
GluI	GCNGC	4 cut(s)	186, 947, 1434, 1552
GsaI	CCCAGC	1 cut(s)	227
HaeIII	GGCC	5 cut(s)	32, 358, 778, 1442, 1463
HapII	CCGG	2 cut(s)	132, 882
HgaI	GACGC	1 cut(s)	9
Hin1I	GRCGYC	1 cut(s)	20
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HinfI	GANTC	6 cut(s)	72, 113, 135, 446, 662, 1575
HpaII	CCGG	2 cut(s)	132, 882
HphI	GGTGA	4 cut(s)	338, 425, 1393, 1415
Hpy166II	GTNNAC	2 cut(s)	293, 541
Hpy188I	TCNGA	9 cut(s)	77, 178, 199, 834, 1174, 1288, 1315, 1542, 1580
Hpy188III	TCNNGA	6 cut(s)	450, 654, 1214, 1264, 1396, 1572
Hpy8I	GTNNAC	2 cut(s)	293, 541
HpyAV	CCTTC	7 cut(s)	149, 308, 1295, 1400, 1412, 1432, 1519
HpyCH4III	ACNGT	7 cut(s)	545, 595, 784, 1144, 1470, 1496, 1538
HpyF10VI	GCNNNNNNNGC	7 cut(s)	17, 878, 970, 1135, 1439, 1484, 1557
HpyF3I	CTNAG	8 cut(s)	74, 212, 283, 470, 666, 831, 1059, 1171
Hsp92I	GRCGYC	1 cut(s)	20
Kzo9I	GATC	2 cut(s)	215, 895
Lsp1109I	GCAGC	4 cut(s)	172, 933, 1420, 1563
LweI	GCATC	4 cut(s)	932, 1165, 1257, 1311
MaeIII	GTNAC	5 cut(s)	38, 343, 447, 1220, 1496
MalI	GATC	2 cut(s)	217, 897
MboI	GATC	2 cut(s)	215, 895
MboII	GAAGA	9 cut(s)	66, 73, 78, 81, 563, 611, 711, 786, 1328
MfeI	CAATTG	1 cut(s)	918
MflI	RGATCY	1 cut(s)	895
MhlI	GDGCHC	1 cut(s)	420
MlsI	TGGCCA	1 cut(s)	358
MluNI	TGGCCA	1 cut(s)	358
MlyI	GAGTC	2 cut(s)	66, 455
MmeI	TCCRAC	2 cut(s)	867, 1520
Mox20I	TGGCCA	1 cut(s)	358
MroXI	GAANNNNTTC	3 cut(s)	84, 117, 661
MscI	TGGCCA	1 cut(s)	358
MseI	TTAA	2 cut(s)	266, 674
MslI	CAYNNNNRTG	2 cut(s)	146, 1265
Msp20I	TGGCCA	1 cut(s)	358
MspA1I	CMGCKG	2 cut(s)	51, 1251
MspI	CCGG	2 cut(s)	132, 882
MspR9I	CCNGG	2 cut(s)	715, 883
MunI	CAATTG	1 cut(s)	918
MvaI	CCWGG	1 cut(s)	715
MwoI	GCNNNNNNNGC	7 cut(s)	17, 878, 970, 1135, 1439, 1484, 1557
NciI	CCSGG	1 cut(s)	883
NcoI	CCATGG	1 cut(s)	399
NdeII	GATC	2 cut(s)	215, 895
NlaIV	GGNNCC	4 cut(s)	237, 897, 956, 1530
NmuCI	GTSAC	4 cut(s)	38, 343, 447, 1496
NspI	RCATGY	2 cut(s)	341, 829
PagI	TCATGA	2 cut(s)	1263, 1395
PceI	AGGCCT	1 cut(s)	32
PciI	ACATGT	2 cut(s)	337, 825
PdmI	GAANNNNTTC	3 cut(s)	84, 117, 661
PfeI	GAWTC	3 cut(s)	113, 135, 662
PflFI	GACNNNGTC	2 cut(s)	838, 1165
PflMI	CCANNNNNTGG	1 cut(s)	849
PkrI	GCNGC	4 cut(s)	187, 948, 1435, 1553
PleI	GAGTC	2 cut(s)	66, 454
PpsI	GAGTC	2 cut(s)	66, 454
PscI	ACATGT	2 cut(s)	337, 825
PshAI	GACNNNNGTC	1 cut(s)	709
PshBI	ATTAAT	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	713
PspEI	GGTNACC	1 cut(s)	1220
PspFI	CCCAGC	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	713
PspN4I	GGNNCC	4 cut(s)	237, 897, 956, 1530
PstI	CTGCAG	3 cut(s)	734, 951, 1140
PsuI	RGATCY	1 cut(s)	895
PsyI	GACNNNGTC	2 cut(s)	838, 1165
RsaI	GTAC	4 cut(s)	130, 276, 824, 909
RsaNI	GTAC	4 cut(s)	129, 275, 823, 908
RseI	CAYNNNNRTG	2 cut(s)	146, 1265
SaqAI	TTAA	2 cut(s)	266, 674
SatI	GCNGC	4 cut(s)	186, 947, 1434, 1552
Sau3AI	GATC	2 cut(s)	215, 895
SchI	GAGTC	2 cut(s)	66, 455
ScrFI	CCNGG	2 cut(s)	715, 883
SduI	GDGCHC	1 cut(s)	420
SfaNI	GCATC	4 cut(s)	932, 1165, 1257, 1311
SfcI	CTRYAG	4 cut(s)	730, 947, 1136, 1506
SmiMI	CAYNNNNRTG	2 cut(s)	146, 1265
SmlI	CTYRAG	2 cut(s)	34, 1106
SmoI	CTYRAG	2 cut(s)	34, 1106
SseBI	AGGCCT	1 cut(s)	32
SsiI	CCGC	7 cut(s)	51, 872, 964, 1251, 1324, 1413, 1457
SspI	AATATT	1 cut(s)	244
StuI	AGGCCT	1 cut(s)	32
StyD4I	CCNGG	2 cut(s)	713, 881
StyI	CCWWGG	2 cut(s)	399, 798
TaaI	ACNGT	7 cut(s)	545, 595, 784, 1144, 1470, 1496, 1538
TaqI	TCGA	1 cut(s)	1358
TatI	WGTACW	1 cut(s)	274
TfiI	GAWTC	3 cut(s)	113, 135, 662
Tru1I	TTAA	2 cut(s)	266, 674
Tru9I	TTAA	2 cut(s)	266, 674
TscAI	CASTG	1 cut(s)	739
TseFI	GTSAC	4 cut(s)	38, 343, 447, 1496
TseI	GCWGC	4 cut(s)	185, 946, 1433, 1551
Tsp45I	GTSAC	4 cut(s)	38, 343, 447, 1496
TspGWI	ACGGA	1 cut(s)	624
TspRI	CASTG	1 cut(s)	739
Tth111I	GACNNNGTC	2 cut(s)	838, 1165
Van91I	CCANNNNNTGG	1 cut(s)	849
VspI	ATTAAT	1 cut(s)	266
XapI	RAATTY	3 cut(s)	461, 629, 1082
XceI	RCATGY	2 cut(s)	341, 829
XmnI	GAANNNNTTC	3 cut(s)	84, 117, 661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.