Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002068

Physical Location & Seq

Genomic Coordinates Forward (+)

5132225 .. 5134316

Gene Structure 2092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0034700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTATATATATAGTAACCGCACATTCTGGAATTTGAAATTCCCGCACACACGGAGAGCAAAGCGCAGTAGAGAAACCAAGAACAAGAAGATGGACCGGTTTATTTTGGAGGCATTGGAGGGTGATTTCTTATGGTATGAAAATCCTCCAGTACTGAATCCAAGCGCCTTTGTGCCTTACACTGAAGCTCCTGAGTCAGGCGAGCCTACTAATTCCGGGTCTAATTCCATGAACATGAACAAGAGGATGTTGCGGTTCTTGAGGAAGAATTATCCACCTTCGACGGCTAGGATCGAAATAGGAGAGGAGGAGCACGGCAAGGAAAAGGGTTTTCGCCACATGATCAATGAGCGAATGAGGAGGGAGAAGCAGAAGCAGAGCTATTTTGCCTTGCATTCTTTGCTGCCTAATGGAACCAAGAGTGATAAGAATTGGATTGTGCAAATGGCGACCACGAACATTCAGCAGCTGGAGAGGCAAAATGAGGAGCTGAGAAAGCGGAACATGGAGCTCGAATCGATTTTGGGCAAGGAGAGATCAGTGAAGTGGAGAAGGATTAGATTGAGGGTAGCCAATCCTACTTCAGGAATTGATTCTATGCTGGAGGTTCTTAAGTGCTTGAAAAGTTTGGGATTAAAGACCAGAAATATTCAATCATTTTTCTCTCCGTATGAGTTTTCTGCAGAAGTGGAAATTGAATCTCAGATCGGAGCCACAGTGGTAGAAGCCGCGATGCAAGAAACACTATATGAAGTTGAGAGGAAACTTCTTTCTTCAGTTCCAGGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003958 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009698 GO:0009987 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0019748 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

263

Amino Acids

30.86

Weight (kDa)

9.75

Isoelectric Point (pI)

61.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	112 - 158	7.6e-07	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30210 AT4G30210 AT4G30210
fragaria_vesca	FvH4_4g08180
malus_domestica	MD13G1253300.v1.1 MD16G1257600.v1.1
prunus_persica	Prupe.1G085400_v2.0.a1
pyrus_communis	pycom12480g00040 pycom13g22470
rosa_chinensis	RchiOBHm_Chr1g0334331 RchiOBHm_Chr4g0402381 RchiOBHm_Chr4g0402391 RchiOBHm_Chr4g0419591 RchiOBHm_Chr7g0226121
rosa_laevigata	RLG00000009089 RLG00000009093 RLG00000009097 RLG00000009098
rosa_multiflora	Rmu_co8074388.1_g000001 Rmu_sc0002660.1_g000001 Rmu_sc0023635.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022590 Rroxscaffold_5G00347040 Rroxscaffold_5G00347050
rosa_rugosa	Rorug03G0293000 Rorug04G0034500 Rorug04G0034500 Rorug04G0034600 Rorug04G0034700 Rorug04G0034800 Rorug04G0034900 Rorug04G0035000 Rorug05G0246500
rosa_samantha	Rh4AG112500 Rh4AG112600 Rh4BG105000 Rh4BG105100 Rh4CG004400 Rh4CG119300 Rh4CG119400 Rh4DG104000 Rh4DG104100 Rh5AG337100
rosa_wichuraiana	Rw4G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	731
AciI	CCGC	5 cut(s)	19, 44, 253, 499, 729
AclWI	GGATC	1 cut(s)	299
AcsI	RAATTY	2 cut(s)	31, 38
AcuI	CTGAAG	3 cut(s)	204, 567, 759
AfaI	GTAC	1 cut(s)	153
AfiI	CCNNNNNNNGG	2 cut(s)	197, 584
AflII	CTTAAG	1 cut(s)	611
AgeI	ACCGGT	1 cut(s)	96
AgsI	TTSAA	4 cut(s)	37, 622, 653, 698
AjnI	CCWGG	1 cut(s)	781
AluBI	AGCT	5 cut(s)	188, 381, 469, 490, 511
AluI	AGCT	5 cut(s)	188, 381, 469, 490, 511
Alw21I	GWGCWC	2 cut(s)	315, 513
AlwI	GGATC	1 cut(s)	299
AlwNI	CAGNNNCTG	1 cut(s)	469
ApeKI	GCWGC	2 cut(s)	403, 466
ApoI	RAATTY	2 cut(s)	31, 38
AsiGI	ACCGGT	1 cut(s)	96
Asp700I	GAANNNNTTC	1 cut(s)	592
AspLEI	GCGC	2 cut(s)	66, 167
AspS9I	GGNCC	1 cut(s)	94
AsuC2I	CCSGG	1 cut(s)	217
AsuHPI	GGTGA	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	94
BanII	GRGCYC	1 cut(s)	513
Bbv12I	GWGCWC	2 cut(s)	315, 513
BbvI	GCAGC	2 cut(s)	390, 478
BccI	CCATC	1 cut(s)	85
BceAI	ACGGC	2 cut(s)	300, 331
BciT130I	CCWGG	1 cut(s)	783
BclI	TGATCA	1 cut(s)	342
BcnI	CCSGG	1 cut(s)	217
BfaI	CTAG	1 cut(s)	288
BfmI	CTRYAG	1 cut(s)	681
BfoI	RGCGCY	1 cut(s)	168
BfrI	CTTAAG	1 cut(s)	611
BisI	GCNGC	3 cut(s)	404, 467, 729
BlsI	GCNGC	3 cut(s)	405, 468, 730
BmcAI	AGTACT	1 cut(s)	153
Bme1390I	CCNGG	2 cut(s)	217, 783
Bme18I	GGWCC	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	2 cut(s)	415, 712
BmrFI	CCNGG	2 cut(s)	217, 783
BmsI	GCATC	1 cut(s)	723
BpmI	CTGGAG	3 cut(s)	132, 491, 623
BpuEI	CTTGAG	1 cut(s)	280
BpuMI	CCSGG	1 cut(s)	217
Bsa29I	ATCGAT	1 cut(s)	518
BsaWI	WCCGGW	1 cut(s)	96
BsaXI	ACNNNNNCTCC	4 cut(s)	172, 202, 702, 732
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 584
Bse118I	RCCGGY	1 cut(s)	96
Bse1I	ACTGG	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	783
BseCI	ATCGAT	1 cut(s)	518
BseGI	GGATG	1 cut(s)	252
BseLI	CCNNNNNNNGG	2 cut(s)	197, 584
BseMII	CTCAG	3 cut(s)	183, 482, 716
BseNI	ACTGG	1 cut(s)	149
BseRI	GAGGAG	4 cut(s)	320, 323, 373, 500
BseXI	GCAGC	2 cut(s)	390, 478
Bsh1236I	CGCG	1 cut(s)	731
BshTI	ACCGGT	1 cut(s)	96
BshVI	ATCGAT	1 cut(s)	518
BsiHKAI	GWGCWC	2 cut(s)	315, 513
BsiSI	CCGG	2 cut(s)	97, 216
BslI	CCNNNNNNNGG	2 cut(s)	197, 584
BsmI	GAATGC	1 cut(s)	394
Bsp1286I	GDGCHC	2 cut(s)	315, 513
Bsp143I	GATC	4 cut(s)	291, 342, 536, 705
BspACI	CCGC	5 cut(s)	19, 44, 253, 499, 729
BspCNI	CTCAG	3 cut(s)	184, 483, 715
BspDI	ATCGAT	1 cut(s)	518
BspFNI	CGCG	1 cut(s)	731
BspLI	GGNNCC	2 cut(s)	415, 712
BspMAI	CTGCAG	1 cut(s)	685
BspPI	GGATC	1 cut(s)	299
BspTI	CTTAAG	1 cut(s)	611
BsrFI	RCCGGY	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	149
BssAI	RCCGGY	1 cut(s)	96
BssMI	GATC	4 cut(s)	291, 342, 536, 705
Bst2UI	CCWGG	1 cut(s)	783
Bst4CI	ACNGT	1 cut(s)	718
BstAFI	CTTAAG	1 cut(s)	611
BstAPI	GCANNNNNTGC	1 cut(s)	400
BstC8I	GCNNGC	1 cut(s)	203
BstDEI	CTNAG	3 cut(s)	192, 491, 702
BstENI	CCTNNNNNAGG	2 cut(s)	195, 582
BstF5I	GGATG	1 cut(s)	252
BstFNI	CGCG	1 cut(s)	731
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	2 cut(s)	66, 167
BstKTI	GATC	4 cut(s)	294, 345, 539, 708
BstMBI	GATC	4 cut(s)	291, 342, 536, 705
BstMWI	GCNNNNNNNGC	3 cut(s)	400, 475, 496
BstNI	CCWGG	1 cut(s)	783
BstSCI	CCNGG	2 cut(s)	215, 781
BstSFI	CTRYAG	1 cut(s)	681
BstUI	CGCG	1 cut(s)	731
BstV1I	GCAGC	2 cut(s)	390, 478
Bsu15I	ATCGAT	1 cut(s)	518
BsuTUI	ATCGAT	1 cut(s)	518
BtgZI	GCGATG	1 cut(s)	746
BtsCI	GGATG	1 cut(s)	252
BtsIMutI	CAGTG	3 cut(s)	180, 546, 723
Cac8I	GCNNGC	1 cut(s)	203
CaiI	CAGNNNCTG	1 cut(s)	469
CfoI	GCGC	2 cut(s)	66, 167
Cfr10I	RCCGGY	1 cut(s)	96
Cfr13I	GGNCC	1 cut(s)	94
ClaI	ATCGAT	1 cut(s)	518
Csp6I	GTAC	1 cut(s)	152
CspAI	ACCGGT	1 cut(s)	96
CviAII	CATG	4 cut(s)	229, 235, 340, 505
CviQI	GTAC	1 cut(s)	152
DdeI	CTNAG	3 cut(s)	192, 491, 702
DpnI	GATC	4 cut(s)	293, 344, 538, 707
DpnII	GATC	4 cut(s)	291, 342, 536, 705
Ecl136II	GAGCTC	1 cut(s)	511
Eco24I	GRGCYC	1 cut(s)	513
Eco47I	GGWCC	1 cut(s)	94
Eco53kI	GAGCTC	1 cut(s)	511
Eco57I	CTGAAG	3 cut(s)	204, 567, 759
EcoICRI	GAGCTC	1 cut(s)	511
EcoNI	CCTNNNNNAGG	2 cut(s)	195, 582
EcoRII	CCWGG	1 cut(s)	781
EcoT38I	GRGCYC	1 cut(s)	513
FaeI	CATG	4 cut(s)	232, 238, 343, 508
FatI	CATG	4 cut(s)	228, 234, 339, 504
FauI	CCCGC	1 cut(s)	51
FbaI	TGATCA	1 cut(s)	342
Fnu4HI	GCNGC	3 cut(s)	404, 467, 729
FokI	GGATG	1 cut(s)	259
FriOI	GRGCYC	1 cut(s)	513
Fsp4HI	GCNGC	3 cut(s)	404, 467, 729
FspBI	CTAG	1 cut(s)	288
GlaI	GCGC	2 cut(s)	65, 166
GluI	GCNGC	3 cut(s)	404, 467, 729
GsuI	CTGGAG	3 cut(s)	132, 491, 623
HaeII	RGCGCY	1 cut(s)	168
HapII	CCGG	2 cut(s)	97, 216
HhaI	GCGC	2 cut(s)	66, 167
Hin1II	CATG	4 cut(s)	232, 238, 343, 508
Hin6I	GCGC	2 cut(s)	64, 165
HinP1I	GCGC	2 cut(s)	64, 165
HinfI	GANTC	5 cut(s)	157, 194, 515, 593, 698
HpaII	CCGG	2 cut(s)	97, 216
HphI	GGTGA	1 cut(s)	134
Hpy188I	TCNGA	2 cut(s)	705, 710
Hpy188III	TCNNGA	4 cut(s)	28, 191, 259, 585
Hpy99I	CGWCG	1 cut(s)	286
HpyAV	CCTTC	3 cut(s)	288, 546, 780
HpyCH4III	ACNGT	1 cut(s)	718
HpyCH4V	TGCA	4 cut(s)	394, 442, 683, 736
HpyF10VI	GCNNNNNNNGC	3 cut(s)	400, 475, 496
HpyF3I	CTNAG	3 cut(s)	192, 491, 702
Hsp92II	CATG	4 cut(s)	232, 238, 343, 508
HspAI	GCGC	2 cut(s)	64, 165
Ksp22I	TGATCA	1 cut(s)	342
Kzo9I	GATC	4 cut(s)	291, 342, 536, 705
LmnI	GCTCC	5 cut(s)	193, 310, 487, 508, 710
Lsp1109I	GCAGC	2 cut(s)	390, 478
LweI	GCATC	1 cut(s)	723
MaeI	CTAG	1 cut(s)	288
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	4 cut(s)	293, 344, 538, 707
MboI	GATC	4 cut(s)	291, 342, 536, 705
MboII	GAAGA	3 cut(s)	100, 277, 765
MhlI	GDGCHC	2 cut(s)	315, 513
MluCI	AATT	8 cut(s)	31, 38, 211, 223, 268, 430, 588, 693
MlyI	GAGTC	1 cut(s)	203
MroXI	GAANNNNTTC	1 cut(s)	592
MseI	TTAA	2 cut(s)	612, 635
MslI	CAYNNNNRTG	1 cut(s)	233
MspA1I	CMGCKG	1 cut(s)	469
MspCI	CTTAAG	1 cut(s)	611
MspI	CCGG	2 cut(s)	97, 216
MspR9I	CCNGG	2 cut(s)	217, 783
Mva1269I	GAATGC	1 cut(s)	394
MvaI	CCWGG	1 cut(s)	783
MvnI	CGCG	1 cut(s)	731
MwoI	GCNNNNNNNGC	3 cut(s)	400, 475, 496
NciI	CCSGG	1 cut(s)	217
NdeII	GATC	4 cut(s)	291, 342, 536, 705
NlaIII	CATG	4 cut(s)	232, 238, 343, 508
NlaIV	GGNNCC	2 cut(s)	415, 712
PctI	GAATGC	1 cut(s)	394
PdmI	GAANNNNTTC	1 cut(s)	592
PfeI	GAWTC	4 cut(s)	157, 515, 593, 698
PfoI	TCCNGGA	1 cut(s)	781
PinAI	ACCGGT	1 cut(s)	96
PkrI	GCNGC	3 cut(s)	405, 468, 730
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
Psp124BI	GAGCTC	1 cut(s)	513
Psp6I	CCWGG	1 cut(s)	781
PspGI	CCWGG	1 cut(s)	781
PspN4I	GGNNCC	2 cut(s)	415, 712
PspPI	GGNCC	1 cut(s)	94
PstI	CTGCAG	1 cut(s)	685
PstNI	CAGNNNCTG	1 cut(s)	469
PvuII	CAGCTG	1 cut(s)	469
RsaI	GTAC	1 cut(s)	153
RsaNI	GTAC	1 cut(s)	152
RseI	CAYNNNNRTG	1 cut(s)	233
SacI	GAGCTC	1 cut(s)	513
SaqAI	TTAA	2 cut(s)	612, 635
SatI	GCNGC	3 cut(s)	404, 467, 729
Sau3AI	GATC	4 cut(s)	291, 342, 536, 705
Sau96I	GGNCC	1 cut(s)	94
ScaI	AGTACT	1 cut(s)	153
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	2 cut(s)	217, 783
SduI	GDGCHC	2 cut(s)	315, 513
SetI	ASST	8 cut(s)	190, 280, 383, 471, 492, 513, 609, 791
SfaNI	GCATC	1 cut(s)	723
SfcI	CTRYAG	1 cut(s)	681
SinI	GGWCC	1 cut(s)	94
SmiMI	CAYNNNNRTG	1 cut(s)	233
SmlI	CTYRAG	2 cut(s)	259, 611
SmoI	CTYRAG	2 cut(s)	259, 611
Sse9I	AATT	8 cut(s)	31, 38, 211, 223, 268, 430, 588, 693
SsiI	CCGC	5 cut(s)	19, 44, 253, 499, 729
SspI	AATATT	1 cut(s)	649
SspMI	CTAG	1 cut(s)	288
SstI	GAGCTC	1 cut(s)	513
StyD4I	CCNGG	2 cut(s)	215, 781
TaaI	ACNGT	1 cut(s)	718
TaqI	TCGA	4 cut(s)	281, 294, 513, 518
TasI	AATT	8 cut(s)	31, 38, 211, 223, 268, 430, 588, 693
TatI	WGTACW	1 cut(s)	151
TauI	GCSGC	1 cut(s)	731
TfiI	GAWTC	4 cut(s)	157, 515, 593, 698
Tru1I	TTAA	2 cut(s)	612, 635
Tru9I	TTAA	2 cut(s)	612, 635
TscAI	CASTG	3 cut(s)	187, 546, 723
TseI	GCWGC	2 cut(s)	403, 466
TspDTI	ATGAA	4 cut(s)	153, 245, 251, 765
TspGWI	ACGGA	2 cut(s)	67, 657
TspRI	CASTG	3 cut(s)	187, 546, 723
Vha464I	CTTAAG	1 cut(s)	611
VpaK11BI	GGWCC	1 cut(s)	94
XagI	CCTNNNNNAGG	2 cut(s)	195, 582
XapI	RAATTY	2 cut(s)	31, 38
XmnI	GAANNNNTTC	1 cut(s)	592
XspI	CTAG	1 cut(s)	288
ZrmI	AGTACT	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.