Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8074388.1

Orthogroup ID

OG0002068

Physical Location & Seq

Genomic Coordinates Forward (+)

5 .. 513

Gene Structure 509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8074388.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

atgacctgtttcttttgtgttcaggcgtcagacatctggaatatgctatctcagggaggttatatttacgtttgtggtgatgctaagggcatggccagggatgtccaccgaactcttcacacaatcgtgcaggagcagggatctctggacagctcaaaagctgagagcatggtgaaaaatctgcaaatgaatggcaggtatttgcgtgatgtgtggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003958 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009698 GO:0009987 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0019748 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

72

Amino Acids

8.19

Weight (kDa)

6.69

Isoelectric Point (pI)

28.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30210 AT4G30210 AT4G30210
fragaria_vesca	FvH4_4g08180
malus_domestica	MD13G1253300.v1.1 MD16G1257600.v1.1
prunus_persica	Prupe.1G085400_v2.0.a1
pyrus_communis	pycom12480g00040 pycom13g22470
rosa_chinensis	RchiOBHm_Chr1g0334331 RchiOBHm_Chr4g0402381 RchiOBHm_Chr4g0402391 RchiOBHm_Chr4g0419591 RchiOBHm_Chr7g0226121
rosa_laevigata	RLG00000009089 RLG00000009093 RLG00000009097 RLG00000009098
rosa_multiflora	Rmu_co8074388.1_g000001 Rmu_sc0002660.1_g000001 Rmu_sc0023635.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022590 Rroxscaffold_5G00347040 Rroxscaffold_5G00347050
rosa_rugosa	Rorug03G0293000 Rorug04G0034500 Rorug04G0034500 Rorug04G0034600 Rorug04G0034700 Rorug04G0034800 Rorug04G0034900 Rorug04G0035000 Rorug05G0246500
rosa_samantha	Rh4AG112500 Rh4AG112600 Rh4BG105000 Rh4BG105100 Rh4CG004400 Rh4CG119300 Rh4CG119400 Rh4DG104000 Rh4DG104100 Rh5AG337100
rosa_wichuraiana	Rw4G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	186
AclWI	GGATC	1 cut(s)	148
AcoI	YGGCCR	1 cut(s)	93
AcyI	GRCGYC	1 cut(s)	26
AjnI	CCWGG	1 cut(s)	95
AleI	CACNNNNGTG	1 cut(s)	125
AluBI	AGCT	2 cut(s)	153, 161
AluI	AGCT	2 cut(s)	153, 161
AlwI	GGATC	1 cut(s)	148
AoxI	GGCC	1 cut(s)	93
AsuHPI	GGTGA	2 cut(s)	89, 184
BalI	TGGCCA	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	97
BfuAI	ACCTGC	1 cut(s)	186
Bme1390I	CCNGG	1 cut(s)	97
BmrFI	CCNGG	1 cut(s)	97
BmsI	GCATC	1 cut(s)	70
Bpu10I	CCTNAGC	1 cut(s)	84
BsaHI	GRCGYC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	97
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	1 cut(s)	106
BseMII	CTCAG	2 cut(s)	65, 153
BsgI	GTGCAG	1 cut(s)	149
BshFI	GGCC	1 cut(s)	95
BsnI	GGCC	1 cut(s)	95
Bsp143I	GATC	1 cut(s)	140
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	2 cut(s)	64, 154
BspMI	ACCTGC	1 cut(s)	186
BspPI	GGATC	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	1 cut(s)	140
BssNI	GRCGYC	1 cut(s)	26
Bst2UI	CCWGG	1 cut(s)	97
Bst6I	CTCTTC	1 cut(s)	120
BstACI	GRCGYC	1 cut(s)	26
BstDEI	CTNAG	3 cut(s)	51, 84, 162
BstF5I	GGATG	1 cut(s)	106
BstKTI	GATC	1 cut(s)	143
BstMBI	GATC	1 cut(s)	140
BstNI	CCWGG	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	95
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
BsuRI	GGCC	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	106
BveI	ACCTGC	1 cut(s)	186
CseI	GACGC	1 cut(s)	15
CviAII	CATG	2 cut(s)	91, 169
CviJI	RGCY	3 cut(s)	95, 153, 161
CviKI_1	RGCY	3 cut(s)	95, 153, 161
DdeI	CTNAG	3 cut(s)	51, 84, 162
DpnI	GATC	1 cut(s)	142
DpnII	GATC	1 cut(s)	140
EaeI	YGGCCR	1 cut(s)	93
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	95
FaeI	CATG	2 cut(s)	94, 172
FaiI	YATR	4 cut(s)	44, 63, 92, 170
FatI	CATG	2 cut(s)	90, 168
FokI	GGATG	1 cut(s)	113
HaeIII	GGCC	1 cut(s)	95
HgaI	GACGC	1 cut(s)	15
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	2 cut(s)	94, 172
HphI	GGTGA	2 cut(s)	89, 184
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	2 cut(s)	37, 146
Hpy8I	GTNNAC	1 cut(s)	106
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	2 cut(s)	130, 184
HpyF3I	CTNAG	3 cut(s)	51, 84, 162
HpySE526I	ACGT	1 cut(s)	69
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	2 cut(s)	94, 172
Kzo9I	GATC	1 cut(s)	140
LmnI	GCTCC	1 cut(s)	133
LweI	GCATC	1 cut(s)	70
MaeII	ACGT	1 cut(s)	69
MalI	GATC	1 cut(s)	142
MboI	GATC	1 cut(s)	140
MboII	GAAGA	1 cut(s)	107
MflI	RGATCY	1 cut(s)	140
MlsI	TGGCCA	1 cut(s)	95
MluNI	TGGCCA	1 cut(s)	95
MnlI	CCTC	1 cut(s)	50
Mox20I	TGGCCA	1 cut(s)	95
MscI	TGGCCA	1 cut(s)	95
MslI	CAYNNNNRTG	1 cut(s)	125
Msp20I	TGGCCA	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	97
MvaI	CCWGG	1 cut(s)	97
NdeII	GATC	1 cut(s)	140
NlaIII	CATG	2 cut(s)	94, 172
OliI	CACNNNNGTG	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	95
PsuI	RGATCY	1 cut(s)	140
RseI	CAYNNNNRTG	1 cut(s)	125
Sau3AI	GATC	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	97
SetI	ASST	6 cut(s)	8, 61, 72, 155, 163, 200
SfaNI	GCATC	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	125
StyD4I	CCNGG	1 cut(s)	95
TaiI	ACGT	1 cut(s)	72
TspDTI	ATGAA	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.