Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002068

Physical Location & Seq

Genomic Coordinates Forward (+)

49180444 .. 49181029

Gene Structure 586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20252

Sequence Viewer

CDS Protein Promoter (2k)

Length: 147 bp

ATGGCACCATCTAGAATTCATGTTACTTGTGCACTAGTTTGTGACAAAACATCAACAGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAGCAACCGTGGAGGAGAACTGATATTAGAAGACCTCTCAAGCTGAAATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003958 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009698 GO:0009987 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0019748 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

48

Amino Acids

5.63

Weight (kDa)

10.62

Isoelectric Point (pI)

64.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30210 AT4G30210 AT4G30210
fragaria_vesca	FvH4_4g08180
malus_domestica	MD13G1253300.v1.1 MD16G1257600.v1.1
prunus_persica	Prupe.1G085400_v2.0.a1
pyrus_communis	pycom12480g00040 pycom13g22470
rosa_chinensis	RchiOBHm_Chr1g0334331 RchiOBHm_Chr4g0402381 RchiOBHm_Chr4g0402391 RchiOBHm_Chr4g0419591 RchiOBHm_Chr7g0226121
rosa_laevigata	RLG00000009089 RLG00000009093 RLG00000009097 RLG00000009098
rosa_multiflora	Rmu_co8074388.1_g000001 Rmu_sc0002660.1_g000001 Rmu_sc0023635.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022590 Rroxscaffold_5G00347040 Rroxscaffold_5G00347050
rosa_rugosa	Rorug03G0293000 Rorug04G0034500 Rorug04G0034500 Rorug04G0034600 Rorug04G0034700 Rorug04G0034800 Rorug04G0034900 Rorug04G0035000 Rorug05G0246500
rosa_samantha	Rh4AG112500 Rh4AG112600 Rh4BG105000 Rh4BG105100 Rh4CG004400 Rh4CG119300 Rh4CG119400 Rh4DG104000 Rh4DG104100 Rh5AG337100
rosa_wichuraiana	Rw4G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AcsI	RAATTY	1 cut(s)	15
AgsI	TTSAA	1 cut(s)	84
AhlI	ACTAGT	1 cut(s)	34
AluBI	AGCT	1 cut(s)	136
AluI	AGCT	1 cut(s)	136
Alw21I	GWGCWC	1 cut(s)	34
Alw44I	GTGCAC	1 cut(s)	30
ApaLI	GTGCAC	1 cut(s)	30
ApoI	RAATTY	1 cut(s)	15
BaeGI	GKGCMC	1 cut(s)	34
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	130
Bbv12I	GWGCWC	1 cut(s)	34
BccI	CCATC	1 cut(s)	16
BcuI	ACTAGT	1 cut(s)	34
BfaI	CTAG	2 cut(s)	12, 35
BmiI	GGNNCC	1 cut(s)	6
BpiI	GAAGAC	1 cut(s)	130
BpuEI	CTTGAG	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	101
BseGI	GGATG	1 cut(s)	96
BseRI	GAGGAG	1 cut(s)	121
BseSI	GKGCMC	1 cut(s)	34
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	34
BspLI	GGNNCC	1 cut(s)	6
BspT107I	GGYRCC	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	101
Bst4CI	ACNGT	1 cut(s)	102
BstDSI	CCRYGG	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	96
BstSLI	GKGCMC	1 cut(s)	34
BstV2I	GAAGAC	1 cut(s)	130
BtgI	CCRYGG	1 cut(s)	101
BtsCI	GGATG	1 cut(s)	96
CviAII	CATG	2 cut(s)	20, 87
CviJI	RGCY	1 cut(s)	136
CviKI_1	RGCY	1 cut(s)	136
EcoRI	GAATTC	1 cut(s)	15
FaeI	CATG	2 cut(s)	23, 90
FaiI	YATR	2 cut(s)	21, 88
FatI	CATG	2 cut(s)	19, 86
FokI	GGATG	1 cut(s)	103
FspBI	CTAG	2 cut(s)	12, 35
FspEI	CC	9 cut(s)	21, 42, 46, 57, 73, 88, 91, 114, 141
Hin1II	CATG	2 cut(s)	23, 90
HinfI	GANTC	1 cut(s)	64
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188III	TCNNGA	1 cut(s)	12
Hpy8I	GTNNAC	1 cut(s)	32
HpyAV	CCTTC	1 cut(s)	54
HpyCH4III	ACNGT	1 cut(s)	102
HpyCH4V	TGCA	1 cut(s)	32
Hsp92II	CATG	2 cut(s)	23, 90
LpnPI	CCDG	1 cut(s)	42
MaeI	CTAG	2 cut(s)	12, 35
MaeIII	GTNAC	2 cut(s)	22, 41
MboII	GAAGA	1 cut(s)	135
MhlI	GDGCHC	1 cut(s)	34
MluCI	AATT	1 cut(s)	15
MnlI	CCTC	2 cut(s)	99, 138
NlaIII	CATG	2 cut(s)	23, 90
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	6
SduI	GDGCHC	1 cut(s)	34
SetI	ASST	2 cut(s)	130, 138
SgeI	CNNG	7 cut(s)	24, 32, 39, 47, 69, 99, 114
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
SpeI	ACTAGT	1 cut(s)	34
Sse9I	AATT	1 cut(s)	15
SspMI	CTAG	2 cut(s)	12, 35
TaaI	ACNGT	1 cut(s)	102
TasI	AATT	1 cut(s)	15
TfiI	GAWTC	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	2 cut(s)	8, 107
VneI	GTGCAC	1 cut(s)	30
XapI	RAATTY	1 cut(s)	15
XbaI	TCTAGA	1 cut(s)	11
XspI	CTAG	2 cut(s)	12, 35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.