Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004550

Physical Location & Seq

Genomic Coordinates Reverse (-)

16929099 .. 16930551

Gene Structure 1453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g22880.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGGCTCAAGGATTGCTCCGCTCTCCAAGTAGTCGAGAGATGGAGGATATAGGTAATGAATATTTCAACAGTCTATTAGAGAACTCCTTTTTTCAAGATGTTACGAAGGATCGCTACGGGTTTATCATCAGATGCAAGATGCATGATATCGTACATGATCTTGCAGAACTAGCGTCAAAATCTGATCGAGAAGATGAACTGAACCTCCTAAGGGAGCCACATATTCCTTCAATACAACAAAGAAAAGAAATGTTGAGAAAGTGCGCTCCCTATCTAAATGGTGAACTTTGTAACTTCTTCTCAAGCTTCAAGGCTTTACATGTGTTAAATCTATTCTGTTATGATCTTAAGGAGTTGCCCAATTCAATTGGTGAGCTAAGACACTTGAGGTATCTCAACATTTCCAGAACAAAAATCAGGAGTGTTGACTCCGACGGGATCTCTCGAGAGTTCAATGTTTCCAATAGAGCTGGAAAATTTGATCAACTTGCGACATGTTTATTTCCACAAGTGTGTGGTTCCGTTTGGGATGAGATGATTGACTCATCTTCAAACGTTACGTTTCTTTACTTGGATAGCGCGAGGAAAAGCTTAAACATTCTTGAATGTCCAGCTCTGATTGAATGGAAGGAAGCGGTTGTTGTGATGCCATTGCCAACCGATGAGAAAGTAGCGCCAGTAGTGTTTCCCTGCCTCGAGCAGTTGACTCTCTCTTCTTGTACAGAATTGAGAAATGCTCCTGCAAATTTTCCATCTCTCCAAAAGTTGAAGTTAGATTGTACTGGCACCGTCGCGTCAATAGAAAATATAAGCAGTCGACTAACTACTCTCACTTCCCTTGAAATACATGGCGCCAATGAGCTTACTTGTCTGCCAGCAGGGATGGTGGAAGAGAACCACAATCTTCGGTCACTGCTTATCAGGAATTGTGAAAAGCTGAGGCAATTGCCCAAGGGGCTGGACACACTCCCTCTTCTTGAGAAGCTAACTCTTAAGGAATTGTCCTTGTTTAGAGATTGCAAGACATTGTCGAGCTCGCTGGGCGGGTTAGAAGACTGCACCGCTCTTGAGACGTTGAGAATAAATTGTTGCCCCAATCTGACATCCATTCCAATTTCACCATCCCTCCTCGGTTGTGATGAATTATCAAGCCTACCGGGTGGTCTTGAACATTGCACGTCTCTTCAGGATTTGGCAATAGTAACGAATTGTGCAAAGATCACATCCCTTTCAATTCGCAACTTACCTTCCTCTGCGAGTTGCATATTTCGAATTGGCGTGGTTCAAAGAATCTGCAAACTGCATCTCCTGACGAGGAGTTATCTTTGCACGGTTGCACATCCCTCCGTCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03460 ko04014 map03460 map04014

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

452

Amino Acids

50.37

Weight (kDa)

5.88

Isoelectric Point (pI)

56.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004550)

Species	Orthologous Gene IDs
malus_domestica	MD12G1127500.v1.1 MD12G1127800.v1.1
pyrus_communis	pycom15g22880
rosa_chinensis	RchiOBHm_Chr3g0490741 RchiOBHm_Chr3g0490781 RchiOBHm_Chr5g0036381 RchiOBHm_Chr7g0204711
rosa_multiflora	Rmu_co8157836.1_g000001 Rmu_co8197550.1_g000002 Rmu_co8285827.1_g000001 Rmu_sc0000962.1_g000051 Rmu_sc0001049.1_g000003 Rmu_sc0002263.1_g000051 Rmu_sc0002489.1_g000041 Rmu_sc0004142.1_g000006 Rmu_sc0005425.1_g000014 Rmu_sc0037878.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137800 Rroxscaffold_3G00248860 Rroxscaffold_5G00339360 Rroxscaffold_5G00378250 Rroxscaffold_6G00390190 Rroxscaffold_6G00393530 Rroxscaffold_7G00199500
rosa_samantha	Rh1BG194600 Rh3DG134500 Rh3DG149400 Rh3DG157200 Rh3DG157400 Rh4BG185400 Rh5CG399000
rosa_wichuraiana	Rw3G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	785, 851
AccBSI	CCGCTC	2 cut(s)	21, 1064
AccI	GTMKAC	1 cut(s)	817
AccII	CGCG	2 cut(s)	581, 794
AciI	CCGC	4 cut(s)	19, 635, 1044, 1062
AclI	AACGTT	1 cut(s)	555
AclWI	GGATC	2 cut(s)	117, 446
AcsI	RAATTY	2 cut(s)	476, 745
AcuI	CTGAAG	1 cut(s)	1169
AcyI	GRCGYC	1 cut(s)	852
AfaI	GTAC	3 cut(s)	153, 721, 781
AfiI	CCNNNNNNNGG	1 cut(s)	211
AflII	CTTAAG	2 cut(s)	347, 992
AflIII	ACRYGT	2 cut(s)	319, 494
AjiI	CACGTC	1 cut(s)	1179
AleI	CACNNNNGTG	1 cut(s)	511
AloI	GAACNNNNNNTCC	2 cut(s)	189, 221
AluBI	AGCT	9 cut(s)	306, 376, 470, 591, 614, 862, 937, 985, 1035
AluI	AGCT	9 cut(s)	306, 376, 470, 591, 614, 862, 937, 985, 1035
Alw21I	GWGCWC	1 cut(s)	1037
Alw26I	GTCTC	2 cut(s)	1064, 1185
AlwI	GGATC	2 cut(s)	117, 446
Ama87I	CYCGRG	2 cut(s)	444, 695
ApoI	RAATTY	2 cut(s)	476, 745
AspLEI	GCGC	4 cut(s)	266, 581, 676, 854
AsuC2I	CCSGG	1 cut(s)	1158
AsuHPI	GGTGA	3 cut(s)	293, 383, 1110
AsuII	TTCGAA	1 cut(s)	1270
AvaI	CYCGRG	2 cut(s)	444, 695
AxyI	CCTNAGG	1 cut(s)	209
BanI	GGYRCC	2 cut(s)	785, 851
BanII	GRGCYC	1 cut(s)	1037
BarI	GAAGNNNNNNTAC	2 cut(s)	98, 130
BbsI	GAAGAC	1 cut(s)	1059
Bbv12I	GWGCWC	1 cut(s)	1037
BbvCI	CCTCAGC	1 cut(s)	938
BccI	CCATC	4 cut(s)	34, 760, 877, 1129
BclI	TGATCA	1 cut(s)	481
BcnI	CCSGG	1 cut(s)	1158
BcoDI	GTCTC	2 cut(s)	1064, 1185
BfaI	CTAG	1 cut(s)	170
BfoI	RGCGCY	2 cut(s)	677, 855
BfrI	CTTAAG	2 cut(s)	347, 992
BglI	GCCNNNNNGGC	1 cut(s)	955
Bme1390I	CCNGG	1 cut(s)	1158
BmeT110I	CYCGRG	2 cut(s)	444, 695
BmgBI	CACGTC	1 cut(s)	1179
BmiI	GGNNCC	4 cut(s)	216, 520, 787, 853
BmrFI	CCNGG	1 cut(s)	1158
BmsI	GCATC	4 cut(s)	122, 129, 636, 1312
BpiI	GAAGAC	1 cut(s)	1059
BplI	GAGNNNNNCTC	2 cut(s)	721, 753
Bpu10I	CCTNAGC	1 cut(s)	938
Bpu14I	TTCGAA	1 cut(s)	1270
BpuEI	CTTGAG	4 cut(s)	286, 406, 998, 1088
BpuMI	CCSGG	1 cut(s)	1158
BsaHI	GRCGYC	1 cut(s)	852
BsaJI	CCNNGG	2 cut(s)	951, 1129
BsaXI	ACNNNNNCTCC	6 cut(s)	189, 219, 1110, 1140, 1290, 1320
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse1I	ACTGG	2 cut(s)	677, 787
Bse21I	CCTNAGG	1 cut(s)	209
Bse3DI	GCAATG	2 cut(s)	650, 1171
BseDI	CCNNGG	2 cut(s)	951, 1129
BseGI	GGATG	6 cut(s)	535, 888, 1103, 1121, 1223, 1339
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMI	GCAATG	2 cut(s)	650, 1171
BseMII	CTCAG	1 cut(s)	929
BseNI	ACTGG	2 cut(s)	677, 787
BseRI	GAGGAG	2 cut(s)	1118, 1330
BseYI	CCCAGC	1 cut(s)	1039
BsgI	GTGCAG	1 cut(s)	1042
Bsh1236I	CGCG	2 cut(s)	581, 794
BshNI	GGYRCC	2 cut(s)	785, 851
BsiHKAI	GWGCWC	1 cut(s)	1037
BsiHKCI	CYCGRG	2 cut(s)	444, 695
BsiSI	CCGG	1 cut(s)	1157
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	2 cut(s)	1064, 1185
BsmBI	CGTCTC	2 cut(s)	1064, 1185
BsoBI	CYCGRG	2 cut(s)	444, 695
Bsp119I	TTCGAA	1 cut(s)	1270
Bsp1286I	GDGCHC	1 cut(s)	1037
Bsp1407I	TGTACA	1 cut(s)	719
Bsp143I	GATC	7 cut(s)	109, 157, 184, 343, 438, 481, 1218
BspACI	CCGC	4 cut(s)	19, 635, 1044, 1062
BspCNI	CTCAG	1 cut(s)	930
BspFNI	CGCG	2 cut(s)	581, 794
BspLI	GGNNCC	4 cut(s)	216, 520, 787, 853
BspPI	GGATC	2 cut(s)	117, 446
BspT104I	TTCGAA	1 cut(s)	1270
BspT107I	GGYRCC	2 cut(s)	785, 851
BspTI	CTTAAG	2 cut(s)	347, 992
BsrBI	CCGCTC	2 cut(s)	21, 1064
BsrDI	GCAATG	2 cut(s)	650, 1171
BsrGI	TGTACA	1 cut(s)	719
BsrI	ACTGG	2 cut(s)	677, 787
BssECI	CCNNGG	2 cut(s)	951, 1129
BssMI	GATC	7 cut(s)	109, 157, 184, 343, 438, 481, 1218
BssNI	GRCGYC	1 cut(s)	852
BssT1I	CCWWGG	1 cut(s)	951
Bst4CI	ACNGT	3 cut(s)	71, 790, 1333
Bst6I	CTCTTC	4 cut(s)	718, 885, 978, 1188
BstACI	GRCGYC	1 cut(s)	852
BstAFI	CTTAAG	2 cut(s)	347, 992
BstAUI	TGTACA	1 cut(s)	719
BstBI	TTCGAA	1 cut(s)	1270
BstC8I	GCNNGC	2 cut(s)	876, 1037
BstDEI	CTNAG	3 cut(s)	209, 377, 938
BstF5I	GGATG	6 cut(s)	535, 888, 1103, 1121, 1223, 1339
BstFNI	CGCG	2 cut(s)	581, 794
BstH2I	RGCGCY	2 cut(s)	677, 855
BstHHI	GCGC	4 cut(s)	266, 581, 676, 854
BstKTI	GATC	7 cut(s)	112, 160, 187, 346, 441, 484, 1221
BstMAI	GTCTC	2 cut(s)	1064, 1185
BstMBI	GATC	7 cut(s)	109, 157, 184, 343, 438, 481, 1218
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 955, 1041
BstNSI	RCATGY	2 cut(s)	323, 498
BstSCI	CCNGG	1 cut(s)	1156
BstUI	CGCG	2 cut(s)	581, 794
BstV2I	GAAGAC	1 cut(s)	1059
BstX2I	RGATCY	1 cut(s)	438
BstXI	CCANNNNNNTGG	1 cut(s)	958
BstYI	RGATCY	1 cut(s)	438
Bsu36I	CCTNAGG	1 cut(s)	209
BtrI	CACGTC	1 cut(s)	1179
BtsCI	GGATG	6 cut(s)	535, 888, 1103, 1121, 1223, 1339
BtsI	GCAGTG	1 cut(s)	911
BtsIMutI	CAGTG	1 cut(s)	911
Cac8I	GCNNGC	2 cut(s)	876, 1037
CfoI	GCGC	4 cut(s)	266, 581, 676, 854
CseI	GACGC	2 cut(s)	162, 783
Csp6I	GTAC	3 cut(s)	152, 720, 780
CviAII	CATG	5 cut(s)	143, 155, 320, 495, 848
CviQI	GTAC	3 cut(s)	152, 720, 780
DdeI	CTNAG	3 cut(s)	209, 377, 938
DinI	GGCGCC	1 cut(s)	853
DpnI	GATC	7 cut(s)	111, 159, 186, 345, 440, 483, 1220
DpnII	GATC	7 cut(s)	109, 157, 184, 343, 438, 481, 1218
Eam1104I	CTCTTC	4 cut(s)	718, 885, 978, 1188
EarI	CTCTTC	4 cut(s)	718, 885, 978, 1188
Ecl136II	GAGCTC	1 cut(s)	1035
Eco130I	CCWWGG	1 cut(s)	951
Eco24I	GRGCYC	1 cut(s)	1037
Eco32I	GATATC	1 cut(s)	148
Eco53kI	GAGCTC	1 cut(s)	1035
Eco57I	CTGAAG	1 cut(s)	1169
Eco81I	CCTNAGG	1 cut(s)	209
Eco88I	CYCGRG	2 cut(s)	444, 695
EcoICRI	GAGCTC	1 cut(s)	1035
EcoRV	GATATC	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	951
EcoT22I	ATGCAT	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	1037
EgeI	GGCGCC	1 cut(s)	853
EheI	GGCGCC	1 cut(s)	853
ErhI	CCWWGG	1 cut(s)	951
Esp3I	CGTCTC	2 cut(s)	1064, 1185
FaeI	CATG	5 cut(s)	146, 158, 323, 498, 851
FatI	CATG	5 cut(s)	142, 154, 319, 494, 847
FauI	CCCGC	1 cut(s)	1037
FbaI	TGATCA	1 cut(s)	481
FblI	GTMKAC	1 cut(s)	817
FokI	GGATG	6 cut(s)	542, 895, 1090, 1108, 1210, 1326
FriOI	GRGCYC	1 cut(s)	1037
FspBI	CTAG	1 cut(s)	170
GlaI	GCGC	4 cut(s)	265, 580, 675, 853
GsaI	CCCAGC	1 cut(s)	1043
HaeII	RGCGCY	2 cut(s)	677, 855
HapII	CCGG	1 cut(s)	1157
HgaI	GACGC	2 cut(s)	162, 783
HhaI	GCGC	4 cut(s)	266, 581, 676, 854
Hin1I	GRCGYC	1 cut(s)	852
Hin1II	CATG	5 cut(s)	146, 158, 323, 498, 851
Hin6I	GCGC	4 cut(s)	264, 579, 674, 852
HinP1I	GCGC	4 cut(s)	264, 579, 674, 852
HincII	GTYRAC	3 cut(s)	427, 705, 818
HindII	GTYRAC	3 cut(s)	427, 705, 818
HindIII	AAGCTT	2 cut(s)	304, 589
HinfI	GANTC	4 cut(s)	428, 542, 706, 1290
HpaII	CCGG	1 cut(s)	1157
HphI	GGTGA	3 cut(s)	293, 383, 1110
Hpy166II	GTNNAC	4 cut(s)	284, 427, 705, 818
Hpy188I	TCNGA	5 cut(s)	131, 184, 433, 618, 1101
Hpy8I	GTNNAC	4 cut(s)	284, 427, 705, 818
Hpy99I	CGWCG	3 cut(s)	437, 794, 1352
HpyAV	CCTTC	4 cut(s)	100, 237, 622, 1257
HpyCH4III	ACNGT	3 cut(s)	71, 790, 1333
HpyCH4IV	ACGT	4 cut(s)	555, 560, 1073, 1178
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 955, 1041
HpyF3I	CTNAG	3 cut(s)	209, 377, 938
HpySE526I	ACGT	4 cut(s)	555, 560, 1073, 1178
Hsp92I	GRCGYC	1 cut(s)	852
Hsp92II	CATG	5 cut(s)	146, 158, 323, 498, 851
HspAI	GCGC	4 cut(s)	264, 579, 674, 852
KasI	GGCGCC	1 cut(s)	851
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	7 cut(s)	109, 157, 184, 343, 438, 481, 1218
LmnI	GCTCC	4 cut(s)	21, 214, 271, 742
LweI	GCATC	4 cut(s)	122, 129, 636, 1312
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	4 cut(s)	555, 560, 1073, 1178
MaeIII	GTNAC	5 cut(s)	100, 290, 556, 909, 1201
MalI	GATC	7 cut(s)	111, 159, 186, 345, 440, 483, 1220
MbiI	CCGCTC	2 cut(s)	21, 1064
MboI	GATC	7 cut(s)	109, 157, 184, 343, 438, 481, 1218
MboII	GAAGA	9 cut(s)	203, 289, 540, 705, 896, 902, 965, 1064, 1175
MfeI	CAATTG	2 cut(s)	366, 944
MflI	RGATCY	1 cut(s)	438
MhlI	GDGCHC	1 cut(s)	1037
Mly113I	GGCGCC	1 cut(s)	852
MlyI	GAGTC	3 cut(s)	422, 536, 700
MmeI	TCCRAC	1 cut(s)	456
Mph1103I	ATGCAT	1 cut(s)	144
MseI	TTAA	4 cut(s)	326, 348, 593, 993
MslI	CAYNNNNRTG	1 cut(s)	511
MspCI	CTTAAG	2 cut(s)	347, 992
MspI	CCGG	1 cut(s)	1157
MspR9I	CCNGG	1 cut(s)	1158
MunI	CAATTG	2 cut(s)	366, 944
MvnI	CGCG	2 cut(s)	581, 794
MwoI	GCNNNNNNNGC	3 cut(s)	170, 955, 1041
NarI	GGCGCC	1 cut(s)	852
NciI	CCSGG	1 cut(s)	1158
NdeII	GATC	7 cut(s)	109, 157, 184, 343, 438, 481, 1218
NlaIII	CATG	5 cut(s)	146, 158, 323, 498, 851
NlaIV	GGNNCC	4 cut(s)	216, 520, 787, 853
NmuCI	GTSAC	1 cut(s)	909
NsiI	ATGCAT	1 cut(s)	144
NspI	RCATGY	2 cut(s)	323, 498
NspV	TTCGAA	1 cut(s)	1270
OliI	CACNNNNGTG	1 cut(s)	511
PaeR7I	CTCGAG	2 cut(s)	444, 695
PciI	ACATGT	2 cut(s)	319, 494
PfeI	GAWTC	1 cut(s)	1290
PflFI	GACNNNGTC	1 cut(s)	1027
PleI	GAGTC	3 cut(s)	422, 536, 700
PluTI	GGCGCC	1 cut(s)	855
PpsI	GAGTC	3 cut(s)	422, 536, 700
PscI	ACATGT	2 cut(s)	319, 494
Psp124BI	GAGCTC	1 cut(s)	1037
Psp1406I	AACGTT	1 cut(s)	555
PspFI	CCCAGC	1 cut(s)	1039
PspN4I	GGNNCC	4 cut(s)	216, 520, 787, 853
PspXI	VCTCGAGB	1 cut(s)	695
PsuI	RGATCY	1 cut(s)	438
PsyI	GACNNNGTC	1 cut(s)	1027
RsaI	GTAC	3 cut(s)	153, 721, 781
RsaNI	GTAC	3 cut(s)	152, 720, 780
RseI	CAYNNNNRTG	1 cut(s)	511
SacI	GAGCTC	1 cut(s)	1037
SalI	GTCGAC	1 cut(s)	816
SaqAI	TTAA	4 cut(s)	326, 348, 593, 993
Sau3AI	GATC	7 cut(s)	109, 157, 184, 343, 438, 481, 1218
SchI	GAGTC	3 cut(s)	422, 536, 700
ScrFI	CCNGG	1 cut(s)	1158
SduI	GDGCHC	1 cut(s)	1037
SfaNI	GCATC	4 cut(s)	122, 129, 636, 1312
SfoI	GGCGCC	1 cut(s)	853
Sfr274I	CTCGAG	2 cut(s)	444, 695
SfuI	TTCGAA	1 cut(s)	1270
SlaI	CTCGAG	2 cut(s)	444, 695
SmiMI	CAYNNNNRTG	1 cut(s)	511
SmlI	CTYRAG	9 cut(s)	6, 301, 347, 385, 444, 695, 977, 992, 1067
SmoI	CTYRAG	9 cut(s)	6, 301, 347, 385, 444, 695, 977, 992, 1067
SsiI	CCGC	4 cut(s)	19, 635, 1044, 1062
SspDI	GGCGCC	1 cut(s)	851
SspI	AATATT	1 cut(s)	62
SspMI	CTAG	1 cut(s)	170
SstI	GAGCTC	1 cut(s)	1037
StyD4I	CCNGG	1 cut(s)	1156
StyI	CCWWGG	1 cut(s)	951
TaaI	ACNGT	3 cut(s)	71, 790, 1333
TaiI	ACGT	4 cut(s)	558, 563, 1076, 1181
TaqI	TCGA	8 cut(s)	34, 187, 445, 696, 817, 1031, 1270, 1350
TaqII	GACCGA	1 cut(s)	897
TatI	WGTACW	2 cut(s)	719, 779
TfiI	GAWTC	1 cut(s)	1290
Tru1I	TTAA	4 cut(s)	326, 348, 593, 993
Tru9I	TTAA	4 cut(s)	326, 348, 593, 993
TscAI	CASTG	1 cut(s)	918
TseFI	GTSAC	1 cut(s)	909
Tsp45I	GTSAC	1 cut(s)	909
TspDTI	ATGAA	3 cut(s)	72, 210, 1155
TspGWI	ACGGA	2 cut(s)	511, 1336
TspRI	CASTG	1 cut(s)	918
Tth111I	GACNNNGTC	1 cut(s)	1027
Vha464I	CTTAAG	2 cut(s)	347, 992
XapI	RAATTY	2 cut(s)	476, 745
XceI	RCATGY	2 cut(s)	323, 498
XhoI	CTCGAG	2 cut(s)	444, 695
XmiI	GTMKAC	1 cut(s)	817
XspI	CTAG	1 cut(s)	170
Zsp2I	ATGCAT	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.