Rh3DG149400

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0004550
Physical Location & Seq
Forward (+)
12779970 .. 12793338
13369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG149400.1

Sequence Viewer

Length: 492 bp
ATGGCTGAGTTTCTTACTTTTGCTGCCCAGGAAATGCTGACCAAAGTGTTGGGAAATATGATGCGTTCTAGAAATTGTGATGGATGGCAATCAATTGTGGAAAGTAGTATATGGGATTTACCGGATGGAGAAAATAGAATATTGGCGATTTTGAAATTGAGCTTTGATGAACTAAAATCTCCATCATTGAAGCAATGTTTTGCATACTGTTCAATGTTCGTCAAAGATTTCGAATTTAAAAAGGATGACTTGATCCAACTTTGGATGGCCCAAGGATGGCTACACCCTTCTCCCGGCCAAAATAATATAGAGATGGAGGACAGAGGTAGAGACAGAACTCTCAGCATTCTTGGCAACTTTGTCTCTGTAGAGTTAACTTCCTCAGGTTCCATGACATTTTACACATTCATAGCCAGCTTCCTGCCTTCAACTGAGAACGACGCAGCAGATATGATGGAACCAACTGAAGACACATCAGAGGAGTTAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 ko04014 map03460 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

163

Amino Acids

18.58

Weight (kDa)

4.34

Isoelectric Point (pI)

52.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 72 - 111 3.9e-08 Disease resistance protein Winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 247
AcoI YGGCCR 1 cut(s) 295
AcsI RAATTY 1 cut(s) 233
AcuI CTGAAG 1 cut(s) 486
AfiI CCNNNNNNNGG 2 cut(s) 276, 293
AgsI TTSAA 4 cut(s) 154, 190, 213, 429
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 2 cut(s) 162, 417
AluI AGCT 2 cut(s) 162, 417
Alw26I GTCTC 2 cut(s) 324, 367
AlwI GGATC 1 cut(s) 247
AoxI GGCC 2 cut(s) 267, 295
ApeKI GCWGC 2 cut(s) 23, 443
ApoI RAATTY 1 cut(s) 233
AspS9I GGNCC 1 cut(s) 268
AsuC2I CCSGG 1 cut(s) 294
AsuII TTCGAA 1 cut(s) 231
AxyI CCTNAGG 1 cut(s) 382
BbsI GAAGAC 1 cut(s) 474
BbvI GCAGC 2 cut(s) 10, 455
BccI CCATC 8 cut(s) 74, 78, 119, 190, 259, 270, 307, 448
BciT130I CCWGG 1 cut(s) 29
BcnI CCSGG 1 cut(s) 294
BcoDI GTCTC 2 cut(s) 324, 367
BfaI CTAG 1 cut(s) 69
BfmI CTRYAG 1 cut(s) 366
BisI GCNGC 2 cut(s) 24, 444
BlsI GCNGC 2 cut(s) 25, 445
Bme1390I CCNGG 2 cut(s) 29, 294
BmgT120I GGNCC 1 cut(s) 268
BmiI GGNNCC 2 cut(s) 388, 459
BmrFI CCNGG 2 cut(s) 29, 294
BmsI GCATC 1 cut(s) 51
BpiI GAAGAC 1 cut(s) 474
Bpu14I TTCGAA 1 cut(s) 231
BpuMI CCSGG 1 cut(s) 294
BsaBI GATNNNNATC 1 cut(s) 88
BsaJI CCNNGG 2 cut(s) 27, 271
BsaWI WCCGGW 1 cut(s) 121
BsaXI ACNNNNNCTCC 1 cut(s) 473
Bsc4I CCNNNNNNNGG 2 cut(s) 276, 293
Bse21I CCTNAGG 1 cut(s) 382
Bse3DI GCAATG 1 cut(s) 200
Bse8I GATNNNNATC 1 cut(s) 88
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 2 cut(s) 27, 271
BseGI GGATG 5 cut(s) 89, 130, 250, 270, 281
BseJI GATNNNNATC 1 cut(s) 88
BseLI CCNNNNNNNGG 2 cut(s) 276, 293
BseMI GCAATG 1 cut(s) 200
BseMII CTCAG 3 cut(s) 355, 396, 423
BseXI GCAGC 2 cut(s) 10, 455
BshFI GGCC 2 cut(s) 269, 297
BsiSI CCGG 2 cut(s) 122, 294
BslI CCNNNNNNNGG 2 cut(s) 276, 293
BsmAI GTCTC 2 cut(s) 324, 367
BsmI GAATGC 1 cut(s) 345
BsnI GGCC 2 cut(s) 269, 297
Bsp119I TTCGAA 1 cut(s) 231
Bsp143I GATC 1 cut(s) 252
BspANI GGCC 2 cut(s) 269, 297
BspCNI CTCAG 3 cut(s) 354, 395, 424
BspLI GGNNCC 2 cut(s) 388, 459
BspPI GGATC 1 cut(s) 247
BspT104I TTCGAA 1 cut(s) 231
BsrDI GCAATG 1 cut(s) 200
BssECI CCNNGG 2 cut(s) 27, 271
BssMI GATC 1 cut(s) 252
BssT1I CCWWGG 1 cut(s) 271
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 209
BstBI TTCGAA 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 415
BstDEI CTNAG 4 cut(s) 6, 341, 382, 432
BstF5I GGATG 5 cut(s) 89, 130, 250, 270, 281
BstKTI GATC 1 cut(s) 255
BstMAI GTCTC 2 cut(s) 324, 367
BstMBI GATC 1 cut(s) 252
BstMWI GCNNNNNNNGC 1 cut(s) 351
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 2 cut(s) 27, 292
BstSFI CTRYAG 1 cut(s) 366
BstV1I GCAGC 2 cut(s) 10, 455
BstV2I GAAGAC 1 cut(s) 474
BstXI CCANNNNNNTGG 1 cut(s) 49
Bsu36I CCTNAGG 1 cut(s) 382
BsuRI GGCC 2 cut(s) 269, 297
BtsCI GGATG 5 cut(s) 89, 130, 250, 270, 281
Cac8I GCNNGC 1 cut(s) 415
Cfr13I GGNCC 1 cut(s) 268
CseI GACGC 1 cut(s) 449
CviAII CATG 1 cut(s) 391
CviJI RGCY 7 cut(s) 5, 162, 269, 280, 297, 413, 417
CviKI_1 RGCY 7 cut(s) 5, 162, 269, 280, 297, 413, 417
DdeI CTNAG 4 cut(s) 6, 341, 382, 432
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
DraI TTTAAA 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 295
Eco130I CCWWGG 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 486
Eco81I CCTNAGG 1 cut(s) 382
EcoRII CCWGG 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 271
ErhI CCWWGG 1 cut(s) 271
FaeI CATG 1 cut(s) 394
FaiI YATR 8 cut(s) 59, 110, 112, 205, 308, 392, 410, 452
FalI AAGNNNNNCTT 2 cut(s) 233, 265
FatI CATG 1 cut(s) 390
Fnu4HI GCNGC 2 cut(s) 24, 444
FokI GGATG 5 cut(s) 96, 137, 257, 277, 288
Fsp4HI GCNGC 2 cut(s) 24, 444
FspBI CTAG 1 cut(s) 69
GluI GCNGC 2 cut(s) 24, 444
HaeIII GGCC 2 cut(s) 269, 297
HapII CCGG 2 cut(s) 122, 294
HgaI GACGC 1 cut(s) 449
Hin1II CATG 1 cut(s) 394
HincII GTYRAC 1 cut(s) 375
HindII GTYRAC 1 cut(s) 375
HpaI GTTAAC 1 cut(s) 375
HpaII CCGG 2 cut(s) 122, 294
Hpy166II GTNNAC 1 cut(s) 375
Hpy188I TCNGA 1 cut(s) 478
Hpy188III TCNNGA 1 cut(s) 69
Hpy8I GTNNAC 1 cut(s) 375
Hpy99I CGWCG 1 cut(s) 443
HpyAV CCTTC 2 cut(s) 297, 435
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4V TGCA 1 cut(s) 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 351
HpyF3I CTNAG 4 cut(s) 6, 341, 382, 432
Hsp92II CATG 1 cut(s) 394
KspAI GTTAAC 1 cut(s) 375
Kzo9I GATC 1 cut(s) 252
LpnPI CCDG 7 cut(s) 14, 41, 135, 307, 369, 427, 434
Lsp1109I GCAGC 2 cut(s) 10, 455
LweI GCATC 1 cut(s) 51
MaeI CTAG 1 cut(s) 69
MalI GATC 1 cut(s) 254
MboI GATC 1 cut(s) 252
MboII GAAGA 1 cut(s) 479
MfeI CAATTG 1 cut(s) 93
MluCI AATT 4 cut(s) 73, 93, 155, 233
MmeI TCCRAC 1 cut(s) 280
MnlI CCTC 4 cut(s) 310, 317, 391, 472
MseI TTAA 3 cut(s) 237, 374, 485
MspI CCGG 2 cut(s) 122, 294
MspR9I CCNGG 2 cut(s) 29, 294
MunI CAATTG 1 cut(s) 93
Mva1269I GAATGC 1 cut(s) 345
MvaI CCWGG 1 cut(s) 29
MwoI GCNNNNNNNGC 1 cut(s) 351
NciI CCSGG 1 cut(s) 294
NdeII GATC 1 cut(s) 252
NlaIII CATG 1 cut(s) 394
NlaIV GGNNCC 2 cut(s) 388, 459
NspV TTCGAA 1 cut(s) 231
PctI GAATGC 1 cut(s) 345
PkrI GCNGC 2 cut(s) 25, 445
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 2 cut(s) 388, 459
PspPI GGNCC 1 cut(s) 268
SaqAI TTAA 3 cut(s) 237, 374, 485
SatI GCNGC 2 cut(s) 24, 444
Sau3AI GATC 1 cut(s) 252
Sau96I GGNCC 1 cut(s) 268
ScrFI CCNGG 2 cut(s) 29, 294
SetI ASST 4 cut(s) 164, 328, 388, 419
SfaNI GCATC 1 cut(s) 51
SfcI CTRYAG 1 cut(s) 366
SfuI TTCGAA 1 cut(s) 231
Sse9I AATT 4 cut(s) 73, 93, 155, 233
SspI AATATT 1 cut(s) 141
SspMI CTAG 1 cut(s) 69
StyD4I CCNGG 2 cut(s) 27, 292
StyI CCWWGG 1 cut(s) 271
TaaI ACNGT 1 cut(s) 209
TaqI TCGA 1 cut(s) 231
TasI AATT 4 cut(s) 73, 93, 155, 233
Tru1I TTAA 3 cut(s) 237, 374, 485
Tru9I TTAA 3 cut(s) 237, 374, 485
TseI GCWGC 2 cut(s) 23, 443
TspDTI ATGAA 2 cut(s) 183, 397
XapI RAATTY 1 cut(s) 233
XbaI TCTAGA 1 cut(s) 68
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.