Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004550

Physical Location & Seq

Genomic Coordinates Reverse (-)

58739916 .. 58740656

Gene Structure 741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00378250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGACGACAGAGATTCCCACGGCATTAGAGGTCCAAGAGGTGAATGAAGCGGGGCCTCTCCTCTCGGGTGACCATGTACCGGATATCGACCCGACGACTCGAGAGTCTCCCGCCGCCGAGATGTCGGACCAAGCTCGGGGGGTCGTTGAGGGAAATTATGCTAAAGATGAAAGAACCGAGGAACCAACCGACCCTCTAGCATTAGTGACTTATGATCGTGCTATGAATCCTCCGCCTCCTCCTCCTCCCACTAGGCTTAAAAAGCTAGCTCGAATCCTTGAGGAAACTTCTCCTACCGCCGCCGAACTAGAGAGGACAGAACTTCGAAACCTTTTGGGACAACGACGGATGGGGCTTGAAGAACTCCCCGAGGATCCGGGAAGCCATTGTGTTCCTTCGCCGAGAGCGTGTGGTCAATCCAACTCGGCTCGACACTATAGAGAAGTCATTGAAAGACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

153

Amino Acids

16.87

Weight (kDa)

4.74

Isoelectric Point (pI)

70.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004550)

Species	Orthologous Gene IDs
malus_domestica	MD12G1127500.v1.1 MD12G1127800.v1.1
pyrus_communis	pycom15g22880
rosa_chinensis	RchiOBHm_Chr3g0490741 RchiOBHm_Chr3g0490781 RchiOBHm_Chr5g0036381 RchiOBHm_Chr7g0204711
rosa_multiflora	Rmu_co8157836.1_g000001 Rmu_co8197550.1_g000002 Rmu_co8285827.1_g000001 Rmu_sc0000962.1_g000051 Rmu_sc0001049.1_g000003 Rmu_sc0002263.1_g000051 Rmu_sc0002489.1_g000041 Rmu_sc0004142.1_g000006 Rmu_sc0005425.1_g000014 Rmu_sc0037878.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137800 Rroxscaffold_3G00248860 Rroxscaffold_5G00339360 Rroxscaffold_5G00378250 Rroxscaffold_6G00390190 Rroxscaffold_6G00393530 Rroxscaffold_7G00199500
rosa_samantha	Rh1BG194600 Rh3DG134500 Rh3DG149400 Rh3DG157200 Rh3DG157400 Rh4BG185400 Rh5CG399000
rosa_wichuraiana	Rw3G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	103
AciI	CCGC	6 cut(s)	50, 111, 114, 233, 297, 300
AclWI	GGATC	2 cut(s)	368, 381
AfaI	GTAC	1 cut(s)	78
AfiI	CCNNNNNNNGG	2 cut(s)	79, 136
AgsI	TTSAA	2 cut(s)	359, 452
AluBI	AGCT	3 cut(s)	134, 265, 269
AluI	AGCT	3 cut(s)	134, 265, 269
Alw26I	GTCTC	1 cut(s)	111
AlwI	GGATC	2 cut(s)	368, 381
Ama87I	CYCGRG	4 cut(s)	64, 99, 135, 368
AoxI	GGCC	1 cut(s)	53
AspS9I	GGNCC	3 cut(s)	31, 53, 127
AsuC2I	CCSGG	1 cut(s)	378
AsuHPI	GGTGA	2 cut(s)	52, 80
AsuII	TTCGAA	1 cut(s)	325
AsuNHI	GCTAGC	1 cut(s)	265
AvaI	CYCGRG	4 cut(s)	64, 99, 135, 368
AvaII	GGWCC	2 cut(s)	31, 127
BamHI	GGATCC	1 cut(s)	373
BccI	CCATC	1 cut(s)	343
BceAI	ACGGC	1 cut(s)	36
BcnI	CCSGG	1 cut(s)	378
BcoDI	GTCTC	1 cut(s)	111
BfaI	CTAG	4 cut(s)	197, 252, 266, 308
BfmI	CTRYAG	1 cut(s)	436
BisI	GCNGC	2 cut(s)	114, 300
BlsI	GCNGC	2 cut(s)	115, 301
Bme1390I	CCNGG	1 cut(s)	378
Bme18I	GGWCC	2 cut(s)	31, 127
BmeT110I	CYCGRG	4 cut(s)	64, 99, 135, 368
BmgT120I	GGNCC	3 cut(s)	31, 53, 127
BmiI	GGNNCC	3 cut(s)	54, 183, 375
BmrFI	CCNGG	1 cut(s)	378
BmtI	GCTAGC	1 cut(s)	269
Bpu14I	TTCGAA	1 cut(s)	325
BpuEI	CTTGAG	1 cut(s)	299
BpuMI	CCSGG	1 cut(s)	378
BsaJI	CCNNGG	3 cut(s)	18, 177, 369
BsaWI	WCCGGW	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 136
BseDI	CCNNGG	3 cut(s)	18, 177, 369
BseGI	GGATG	1 cut(s)	354
BseLI	CCNNNNNNNGG	2 cut(s)	79, 136
BseRI	GAGGAG	4 cut(s)	50, 228, 231, 234
BshFI	GGCC	1 cut(s)	55
BsiHKCI	CYCGRG	4 cut(s)	64, 99, 135, 368
BsiSI	CCGG	2 cut(s)	80, 377
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	2 cut(s)	79, 136
BsmAI	GTCTC	1 cut(s)	111
BsmFI	GGGAC	1 cut(s)	351
BsnI	GGCC	1 cut(s)	55
BsoBI	CYCGRG	4 cut(s)	64, 99, 135, 368
Bsp119I	TTCGAA	1 cut(s)	325
Bsp143I	GATC	2 cut(s)	214, 373
BspACI	CCGC	6 cut(s)	50, 111, 114, 233, 297, 300
BspANI	GGCC	1 cut(s)	55
BspLI	GGNNCC	3 cut(s)	54, 183, 375
BspOI	GCTAGC	1 cut(s)	269
BspPI	GGATC	2 cut(s)	368, 381
BspT104I	TTCGAA	1 cut(s)	325
BssECI	CCNNGG	3 cut(s)	18, 177, 369
BssMI	GATC	2 cut(s)	214, 373
BstBI	TTCGAA	1 cut(s)	325
BstC8I	GCNNGC	1 cut(s)	267
BstDSI	CCRYGG	1 cut(s)	18
BstEII	GGTNACC	1 cut(s)	68
BstF5I	GGATG	1 cut(s)	354
BstKTI	GATC	2 cut(s)	217, 376
BstMAI	GTCTC	1 cut(s)	111
BstMBI	GATC	2 cut(s)	214, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstPI	GGTNACC	1 cut(s)	68
BstSCI	CCNGG	1 cut(s)	376
BstSFI	CTRYAG	1 cut(s)	436
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BsuRI	GGCC	1 cut(s)	55
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	267
Cfr13I	GGNCC	3 cut(s)	31, 53, 127
Csp6I	GTAC	1 cut(s)	77
CviAII	CATG	1 cut(s)	74
CviJI	RGCY	8 cut(s)	55, 134, 256, 265, 269, 355, 384, 428
CviKI_1	RGCY	8 cut(s)	55, 134, 256, 265, 269, 355, 384, 428
CviQI	GTAC	1 cut(s)	77
DpnI	GATC	2 cut(s)	216, 375
DpnII	GATC	2 cut(s)	214, 373
DrdI	GACNNNNNNGTC	1 cut(s)	103
DseDI	GACNNNNNNGTC	1 cut(s)	103
EciI	GGCGGA	1 cut(s)	222
Eco32I	GATATC	1 cut(s)	85
Eco47I	GGWCC	2 cut(s)	31, 127
Eco88I	CYCGRG	4 cut(s)	64, 99, 135, 368
Eco91I	GGTNACC	1 cut(s)	68
EcoO109I	RGGNCCY	1 cut(s)	53
EcoO65I	GGTNACC	1 cut(s)	68
EcoRV	GATATC	1 cut(s)	85
FaeI	CATG	1 cut(s)	77
FaiI	YATR	5 cut(s)	75, 159, 213, 224, 438
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	1 cut(s)	73
FauI	CCCGC	2 cut(s)	43, 118
Fnu4HI	GCNGC	2 cut(s)	114, 300
FokI	GGATG	1 cut(s)	361
Fsp4HI	GCNGC	2 cut(s)	114, 300
FspBI	CTAG	4 cut(s)	197, 252, 266, 308
GluI	GCNGC	2 cut(s)	114, 300
HaeIII	GGCC	1 cut(s)	55
HapII	CCGG	2 cut(s)	80, 377
Hin1II	CATG	1 cut(s)	77
HinfI	GANTC	5 cut(s)	13, 97, 104, 226, 273
HpaII	CCGG	2 cut(s)	80, 377
HphI	GGTGA	2 cut(s)	52, 80
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	1 cut(s)	101
Hpy99I	CGWCG	2 cut(s)	97, 348
HpyAV	CCTTC	1 cut(s)	405
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
Hsp92II	CATG	1 cut(s)	77
Kzo9I	GATC	2 cut(s)	214, 373
LpnPI	CCDG	2 cut(s)	93, 390
MaeI	CTAG	4 cut(s)	197, 252, 266, 308
MaeIII	GTNAC	2 cut(s)	68, 205
MalI	GATC	2 cut(s)	216, 375
MboI	GATC	2 cut(s)	214, 373
MboII	GAAGA	1 cut(s)	371
MflI	RGATCY	1 cut(s)	373
MluCI	AATT	1 cut(s)	154
MlyI	GAGTC	2 cut(s)	91, 113
MmeI	TCCRAC	2 cut(s)	105, 444
MseI	TTAA	1 cut(s)	258
MspI	CCGG	2 cut(s)	80, 377
MspR9I	CCNGG	1 cut(s)	378
MwoI	GCNNNNNNNGC	1 cut(s)	262
NciI	CCSGG	1 cut(s)	378
NdeII	GATC	2 cut(s)	214, 373
NheI	GCTAGC	1 cut(s)	265
NlaIII	CATG	1 cut(s)	77
NlaIV	GGNNCC	3 cut(s)	54, 183, 375
NmeAIII	GCCGAG	3 cut(s)	142, 404, 426
NmuCI	GTSAC	2 cut(s)	68, 205
NspV	TTCGAA	1 cut(s)	325
PaeR7I	CTCGAG	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	1 cut(s)	404
PfeI	GAWTC	3 cut(s)	13, 226, 273
PfoI	TCCNGGA	1 cut(s)	376
PkrI	GCNGC	2 cut(s)	115, 301
PleI	GAGTC	2 cut(s)	91, 112
PpsI	GAGTC	2 cut(s)	91, 112
PspEI	GGTNACC	1 cut(s)	68
PspN4I	GGNNCC	3 cut(s)	54, 183, 375
PspPI	GGNCC	3 cut(s)	31, 53, 127
PsuI	RGATCY	1 cut(s)	373
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	2 cut(s)	114, 300
Sau3AI	GATC	2 cut(s)	214, 373
Sau96I	GGNCC	3 cut(s)	31, 53, 127
SchI	GAGTC	2 cut(s)	91, 113
ScrFI	CCNGG	1 cut(s)	378
SetI	ASST	7 cut(s)	33, 42, 136, 267, 271, 333, 460
SfcI	CTRYAG	1 cut(s)	436
Sfr274I	CTCGAG	1 cut(s)	99
SfuI	TTCGAA	1 cut(s)	325
SinI	GGWCC	2 cut(s)	31, 127
SlaI	CTCGAG	1 cut(s)	99
SmlI	CTYRAG	2 cut(s)	99, 278
SmoI	CTYRAG	2 cut(s)	99, 278
Sse9I	AATT	1 cut(s)	154
SsiI	CCGC	6 cut(s)	50, 111, 114, 233, 297, 300
SspMI	CTAG	4 cut(s)	197, 252, 266, 308
StyD4I	CCNGG	1 cut(s)	376
TaqI	TCGA	5 cut(s)	87, 100, 271, 325, 430
TasI	AATT	1 cut(s)	154
TauI	GCSGC	2 cut(s)	116, 302
TfiI	GAWTC	3 cut(s)	13, 226, 273
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TseFI	GTSAC	2 cut(s)	68, 205
Tsp45I	GTSAC	2 cut(s)	68, 205
TspDTI	ATGAA	3 cut(s)	60, 183, 239
TspGWI	ACGGA	1 cut(s)	361
VpaK11BI	GGWCC	2 cut(s)	31, 127
XhoI	CTCGAG	1 cut(s)	99
XspI	CTAG	4 cut(s)	197, 252, 266, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.