Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004550

Physical Location & Seq

Genomic Coordinates Reverse (-)

46286054 .. 46287276

Gene Structure 1223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00199500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAGTGTTGGAAGTAACTTCCTCATACTAGCTGTGGATGAGACTAAGATGGTGCTTCGCAAACATGCGGGTCCTCGGGTATTAGACTGTCCTCCCGCAAGTCTTGGAATTCCTAAGGCCTTATCAAACAATCTCGGGCAACCCCTTGTTTCGACGCCTGGAAGTTTGGATGGAAAATGCCGAGGCCCAGTTGGTTTAGAAACACAAGGGGGCACCAAGTGTGGGATCTCACGGTCATCGAGATCATCTTTGTTAGAATCCCATACGGAGCGAAACGGAAAGGAGGAAAGCCACTTTGTGGTTCGTCTTTCCTCCTCTATTTCCTTCCTTGTGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

112

Amino Acids

11.82

Weight (kDa)

8.99

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004550)

Species	Orthologous Gene IDs
malus_domestica	MD12G1127500.v1.1 MD12G1127800.v1.1
pyrus_communis	pycom15g22880
rosa_chinensis	RchiOBHm_Chr3g0490741 RchiOBHm_Chr3g0490781 RchiOBHm_Chr5g0036381 RchiOBHm_Chr7g0204711
rosa_multiflora	Rmu_co8157836.1_g000001 Rmu_co8197550.1_g000002 Rmu_co8285827.1_g000001 Rmu_sc0000962.1_g000051 Rmu_sc0001049.1_g000003 Rmu_sc0002263.1_g000051 Rmu_sc0002489.1_g000041 Rmu_sc0004142.1_g000006 Rmu_sc0005425.1_g000014 Rmu_sc0037878.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137800 Rroxscaffold_3G00248860 Rroxscaffold_5G00339360 Rroxscaffold_5G00378250 Rroxscaffold_6G00390190 Rroxscaffold_6G00393530 Rroxscaffold_7G00199500
rosa_samantha	Rh1BG194600 Rh3DG134500 Rh3DG149400 Rh3DG157200 Rh3DG157400 Rh4BG185400 Rh5CG399000
rosa_wichuraiana	Rw3G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	212
AccB7I	CCANNNNNTGG	1 cut(s)	298
AciI	CCGC	2 cut(s)	68, 96
AclWI	GGATC	1 cut(s)	233
AcsI	RAATTY	1 cut(s)	108
AcyI	GRCGYC	1 cut(s)	155
AdeI	CACNNNGTG	2 cut(s)	219, 298
AfiI	CCNNNNNNNGG	2 cut(s)	222, 298
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	1 cut(s)	32
AluI	AGCT	1 cut(s)	32
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	1 cut(s)	233
Ama87I	CYCGRG	2 cut(s)	75, 134
AoxI	GGCC	2 cut(s)	117, 184
ApoI	RAATTY	1 cut(s)	108
AspS9I	GGNCC	2 cut(s)	71, 185
AvaI	CYCGRG	2 cut(s)	75, 134
AvaII	GGWCC	1 cut(s)	71
AxyI	CCTNAGG	1 cut(s)	114
BaeGI	GKGCMC	1 cut(s)	215
BanI	GGYRCC	1 cut(s)	212
BccI	CCATC	2 cut(s)	43, 164
BciT130I	CCWGG	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	35
BfaI	CTAG	2 cut(s)	29, 337
Bme1390I	CCNGG	1 cut(s)	159
Bme18I	GGWCC	1 cut(s)	71
BmeT110I	CYCGRG	2 cut(s)	75, 134
BmgT120I	GGNCC	2 cut(s)	71, 185
BmiI	GGNNCC	2 cut(s)	72, 214
BmrFI	CCNGG	1 cut(s)	159
BmrI	ACTGGG	1 cut(s)	182
BmuI	ACTGGG	1 cut(s)	182
BsaHI	GRCGYC	1 cut(s)	155
BsaJI	CCNNGG	2 cut(s)	74, 181
Bsc4I	CCNNNNNNNGG	2 cut(s)	222, 298
Bse1I	ACTGG	1 cut(s)	188
Bse21I	CCTNAGG	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	74, 181
BseGI	GGATG	2 cut(s)	43, 175
BseLI	CCNNNNNNNGG	2 cut(s)	222, 298
BseNI	ACTGG	1 cut(s)	188
BseRI	GAGGAG	1 cut(s)	304
BseSI	GKGCMC	1 cut(s)	215
BshFI	GGCC	2 cut(s)	119, 186
BshNI	GGYRCC	1 cut(s)	212
BsiHKCI	CYCGRG	2 cut(s)	75, 134
BslI	CCNNNNNNNGG	2 cut(s)	222, 298
BsmAI	GTCTC	1 cut(s)	35
BsnI	GGCC	2 cut(s)	119, 186
BsoBI	CYCGRG	2 cut(s)	75, 134
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp143I	GATC	2 cut(s)	225, 242
BspACI	CCGC	2 cut(s)	68, 96
BspANI	GGCC	2 cut(s)	119, 186
BspLI	GGNNCC	2 cut(s)	72, 214
BspPI	GGATC	1 cut(s)	233
BspT107I	GGYRCC	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	74, 181
BssMI	GATC	2 cut(s)	225, 242
BssNI	GRCGYC	1 cut(s)	155
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	2 cut(s)	89, 234
BstACI	GRCGYC	1 cut(s)	155
BstDEI	CTNAG	2 cut(s)	45, 114
BstF5I	GGATG	2 cut(s)	43, 175
BstKTI	GATC	2 cut(s)	228, 245
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	2 cut(s)	225, 242
BstNI	CCWGG	1 cut(s)	159
BstNSI	RCATGY	1 cut(s)	68
BstSCI	CCNGG	1 cut(s)	157
BstSLI	GKGCMC	1 cut(s)	215
BstX2I	RGATCY	1 cut(s)	225
BstYI	RGATCY	1 cut(s)	225
Bsu36I	CCTNAGG	1 cut(s)	114
BsuRI	GGCC	2 cut(s)	119, 186
BtsCI	GGATG	2 cut(s)	43, 175
Cfr13I	GGNCC	2 cut(s)	71, 185
CseI	GACGC	1 cut(s)	163
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	4 cut(s)	32, 119, 186, 291
CviKI_1	RGCY	4 cut(s)	32, 119, 186, 291
DdeI	CTNAG	2 cut(s)	45, 114
DpnI	GATC	2 cut(s)	227, 244
DpnII	GATC	2 cut(s)	225, 242
DraIII	CACNNNGTG	2 cut(s)	219, 298
Eco147I	AGGCCT	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	71
Eco81I	CCTNAGG	1 cut(s)	114
Eco88I	CYCGRG	2 cut(s)	75, 134
EcoO109I	RGGNCCY	1 cut(s)	71
EcoRI	GAATTC	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	157
FaeI	CATG	1 cut(s)	68
FaiI	YATR	3 cut(s)	26, 66, 264
FatI	CATG	1 cut(s)	64
FauI	CCCGC	2 cut(s)	61, 103
FokI	GGATG	2 cut(s)	50, 182
FspBI	CTAG	2 cut(s)	29, 337
HaeIII	GGCC	2 cut(s)	119, 186
HgaI	GACGC	1 cut(s)	163
Hin1I	GRCGYC	1 cut(s)	155
Hin1II	CATG	1 cut(s)	68
HinfI	GANTC	1 cut(s)	257
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188III	TCNNGA	1 cut(s)	240
Hpy8I	GTNNAC	1 cut(s)	334
Hpy99I	CGWCG	1 cut(s)	157
HpyAV	CCTTC	1 cut(s)	334
HpyCH4III	ACNGT	2 cut(s)	89, 234
HpyF3I	CTNAG	2 cut(s)	45, 114
Hsp92I	GRCGYC	1 cut(s)	155
Hsp92II	CATG	1 cut(s)	68
Kzo9I	GATC	2 cut(s)	225, 242
LmnI	GCTCC	1 cut(s)	268
LpnPI	CCDG	3 cut(s)	144, 171, 201
MaeI	CTAG	2 cut(s)	29, 337
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	2 cut(s)	227, 244
MboI	GATC	2 cut(s)	225, 242
MflI	RGATCY	1 cut(s)	225
MhlI	GDGCHC	1 cut(s)	215
MluCI	AATT	1 cut(s)	108
MnlI	CCTC	7 cut(s)	32, 84, 102, 176, 277, 322, 325
MspR9I	CCNGG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	159
NdeII	GATC	2 cut(s)	225, 242
NlaIII	CATG	1 cut(s)	68
NlaIV	GGNNCC	2 cut(s)	72, 214
NmeAIII	GCCGAG	1 cut(s)	206
NspI	RCATGY	1 cut(s)	68
PceI	AGGCCT	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	257
PflMI	CCANNNNNTGG	1 cut(s)	298
PpuMI	RGGWCCY	1 cut(s)	71
Psp5II	RGGWCCY	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	2 cut(s)	72, 214
PspPI	GGNCC	2 cut(s)	71, 185
PspPPI	RGGWCCY	1 cut(s)	71
PsuI	RGATCY	1 cut(s)	225
Sau3AI	GATC	2 cut(s)	225, 242
Sau96I	GGNCC	2 cut(s)	71, 185
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	1 cut(s)	215
SetI	ASST	1 cut(s)	34
SinI	GGWCC	1 cut(s)	71
Sse9I	AATT	1 cut(s)	108
SseBI	AGGCCT	1 cut(s)	119
SsiI	CCGC	2 cut(s)	68, 96
SspMI	CTAG	2 cut(s)	29, 337
StuI	AGGCCT	1 cut(s)	119
StyD4I	CCNGG	1 cut(s)	157
TaaI	ACNGT	2 cut(s)	89, 234
TaqI	TCGA	2 cut(s)	152, 239
TasI	AATT	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	257
TspGWI	ACGGA	2 cut(s)	281, 291
Van91I	CCANNNNNTGG	1 cut(s)	298
VpaK11BI	GGWCC	1 cut(s)	71
XapI	RAATTY	1 cut(s)	108
XceI	RCATGY	1 cut(s)	68
XspI	CTAG	2 cut(s)	29, 337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.