Rh1BG194600

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0004550
Physical Location & Seq
Forward (+)
31126736 .. 31127844
1109 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG194600.1

Sequence Viewer

Length: 258 bp
ATGGCTCAGGGATTGCTTCACCCTTCTCCCAATCGAGAGATGGAGGATACAGGCAATGCATTTTTCAATATTCTATTGGAGAACTCTTTCTTTCAAGATGTTACCAAGGATGAATTTGGTGTTATCACCCATTGCAAGATGCACGATCTTGTGCATGATCTTGCTGAACATAACGCAGCGCAGCCAAGGAAGTGGAAAGACGAGTGTGTGGGTGCGTTGCTTGGCTGGTGGATCGACGAGTCTTGGTCTGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 ko04014 map03460 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

85

Amino Acids

9.74

Weight (kDa)

4.79

Isoelectric Point (pI)

45.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 1 - 55 3.2e-17 Disease resistance protein Winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 239
AcsI RAATTY 1 cut(s) 113
AgsI TTSAA 2 cut(s) 67, 95
AlwI GGATC 1 cut(s) 239
ApeKI GCWGC 2 cut(s) 176, 181
ApoI RAATTY 1 cut(s) 113
Asp700I GAANNNNTTC 1 cut(s) 86
AspLEI GCGC 1 cut(s) 181
AsuHPI GGTGA 2 cut(s) 11, 118
BbvI GCAGC 2 cut(s) 188, 193
BccI CCATC 1 cut(s) 34
BciVI GTATCC 1 cut(s) 40
BfuI GTATCC 1 cut(s) 40
BisI GCNGC 2 cut(s) 177, 182
BlsI GCNGC 2 cut(s) 178, 183
BmsI GCATC 1 cut(s) 129
Bpu10I CCTNAGC 1 cut(s) 6
BsaJI CCNNGG 2 cut(s) 105, 185
Bse3DI GCAATG 2 cut(s) 61, 130
BseDI CCNNGG 2 cut(s) 105, 185
BseGI GGATG 1 cut(s) 115
BseMI GCAATG 2 cut(s) 61, 130
BseMII CTCAG 1 cut(s) 20
BseXI GCAGC 2 cut(s) 188, 193
Bsp143I GATC 3 cut(s) 145, 157, 231
BspCNI CTCAG 1 cut(s) 19
BspPI GGATC 1 cut(s) 239
BsrDI GCAATG 2 cut(s) 61, 130
BssECI CCNNGG 2 cut(s) 105, 185
BssMI GATC 3 cut(s) 145, 157, 231
BssT1I CCWWGG 2 cut(s) 105, 185
BstDEI CTNAG 1 cut(s) 6
BstF5I GGATG 1 cut(s) 115
BstHHI GCGC 1 cut(s) 181
BstKTI GATC 3 cut(s) 148, 160, 234
BstMBI GATC 3 cut(s) 145, 157, 231
BstV1I GCAGC 2 cut(s) 188, 193
BstXI CCANNNNNNTGG 1 cut(s) 192
BsuI GTATCC 1 cut(s) 40
BtsCI GGATG 1 cut(s) 115
CfoI GCGC 1 cut(s) 181
CviAII CATG 1 cut(s) 155
CviJI RGCY 3 cut(s) 5, 184, 225
CviKI_1 RGCY 3 cut(s) 5, 184, 225
DdeI CTNAG 1 cut(s) 6
DpnI GATC 3 cut(s) 147, 159, 233
DpnII GATC 3 cut(s) 145, 157, 231
Eco130I CCWWGG 2 cut(s) 105, 185
EcoT14I CCWWGG 2 cut(s) 105, 185
EcoT22I ATGCAT 1 cut(s) 61
ErhI CCWWGG 2 cut(s) 105, 185
FaeI CATG 1 cut(s) 158
FaiI YATR 2 cut(s) 156, 171
FatI CATG 1 cut(s) 154
Fnu4HI GCNGC 2 cut(s) 177, 182
FokI GGATG 1 cut(s) 122
Fsp4HI GCNGC 2 cut(s) 177, 182
GlaI GCGC 1 cut(s) 180
GluI GCNGC 2 cut(s) 177, 182
HhaI GCGC 1 cut(s) 181
Hin1II CATG 1 cut(s) 158
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HinfI GANTC 1 cut(s) 239
HphI GGTGA 2 cut(s) 11, 118
Hpy188III TCNNGA 2 cut(s) 35, 95
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 1 cut(s) 33
HpyCH4V TGCA 4 cut(s) 59, 135, 142, 154
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 1 cut(s) 158
HspAI GCGC 1 cut(s) 179
Kzo9I GATC 3 cut(s) 145, 157, 231
LpnPI CCDG 2 cut(s) 36, 211
Lsp1109I GCAGC 2 cut(s) 188, 193
LweI GCATC 1 cut(s) 129
MaeIII GTNAC 1 cut(s) 100
MalI GATC 3 cut(s) 147, 159, 233
MboI GATC 3 cut(s) 145, 157, 231
MluCI AATT 1 cut(s) 113
MlyI GAGTC 1 cut(s) 248
MnlI CCTC 1 cut(s) 37
Mph1103I ATGCAT 1 cut(s) 61
MroXI GAANNNNTTC 1 cut(s) 86
NdeII GATC 3 cut(s) 145, 157, 231
NlaIII CATG 1 cut(s) 158
NsiI ATGCAT 1 cut(s) 61
PdmI GAANNNNTTC 1 cut(s) 86
PkrI GCNGC 2 cut(s) 178, 183
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
SatI GCNGC 2 cut(s) 177, 182
Sau3AI GATC 3 cut(s) 145, 157, 231
SchI GAGTC 1 cut(s) 248
SfaNI GCATC 1 cut(s) 129
Sse9I AATT 1 cut(s) 113
SspI AATATT 1 cut(s) 70
StyI CCWWGG 2 cut(s) 105, 185
TaqI TCGA 2 cut(s) 34, 234
TasI AATT 1 cut(s) 113
TseI GCWGC 2 cut(s) 176, 181
TspDTI ATGAA 1 cut(s) 126
XapI RAATTY 1 cut(s) 113
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
XmnI GAANNNNTTC 1 cut(s) 86
Zsp2I ATGCAT 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.