Rroxscaffold_2G00137800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0004550
Physical Location & Seq
Reverse (-)
75809398 .. 75809706
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00137800.1

Sequence Viewer

Length: 309 bp
ATGTCGGACCGTGGCTCGGGAGGTTGTTGCGAAGATGTGGATGAAGATGAAAGAATTGAGGAACCAATCGACCCTCTAGCATTAGTGACTTATGATCGTGCCGCAAATCCTTTGCCTCCTCCTCCCACTAGGCTTGAAAAATTAGCTCGAATCCTTGAGGAAGCTCCTCCTACGCCACGAACTAGCGAGGACAGAGCTTCAAAACCTTTTGGGACAGCGGCGGGACTCGAAGAACTCCCCGGATCCGGGAAGTCATTGTGTTCTTTCGCCGAGAGCGTGCGGTCAATCCAACTCGGCTCGACACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

10.88

Weight (kDa)

4.46

Isoelectric Point (pI)

54.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 102, 218, 221, 280
AclWI GGATC 2 cut(s) 237, 250
AfiI CCNNNNNNNGG 3 cut(s) 16, 245, 246
AgsI TTSAA 2 cut(s) 137, 201
AluBI AGCT 3 cut(s) 146, 164, 197
AluI AGCT 3 cut(s) 146, 164, 197
AlwI GGATC 2 cut(s) 237, 250
Ama87I CYCGRG 1 cut(s) 16
AspS9I GGNCC 1 cut(s) 7
AsuC2I CCSGG 2 cut(s) 240, 247
AvaI CYCGRG 1 cut(s) 16
AvaII GGWCC 1 cut(s) 7
BamHI GGATCC 1 cut(s) 242
BcnI CCSGG 2 cut(s) 240, 247
BfaI CTAG 3 cut(s) 77, 129, 183
BfmI CTRYAG 1 cut(s) 305
BisI GCNGC 2 cut(s) 102, 219
BlsI GCNGC 2 cut(s) 103, 220
Bme1390I CCNGG 2 cut(s) 240, 247
Bme18I GGWCC 1 cut(s) 7
BmeT110I CYCGRG 1 cut(s) 16
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 2 cut(s) 63, 244
BmrFI CCNGG 2 cut(s) 240, 247
BpuEI CTTGAG 1 cut(s) 176
BpuMI CCSGG 2 cut(s) 240, 247
BsaJI CCNNGG 2 cut(s) 10, 238
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 245, 246
BseDI CCNNGG 2 cut(s) 10, 238
BseGI GGATG 1 cut(s) 46
BseLI CCNNNNNNNGG 3 cut(s) 16, 245, 246
BseRI GAGGAG 3 cut(s) 108, 111, 156
BsiHKCI CYCGRG 1 cut(s) 16
BsiSI CCGG 2 cut(s) 240, 246
BslFI GGGAC 2 cut(s) 226, 237
BslI CCNNNNNNNGG 3 cut(s) 16, 245, 246
BsmFI GGGAC 2 cut(s) 226, 237
BsoBI CYCGRG 1 cut(s) 16
Bsp143I GATC 2 cut(s) 94, 242
BspACI CCGC 4 cut(s) 102, 218, 221, 280
BspLI GGNNCC 2 cut(s) 63, 244
BspPI GGATC 2 cut(s) 237, 250
BssECI CCNNGG 2 cut(s) 10, 238
BssMI GATC 2 cut(s) 94, 242
Bst4CI ACNGT 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 278
BstDSI CCRYGG 1 cut(s) 10
BstF5I GGATG 1 cut(s) 46
BstKTI GATC 2 cut(s) 97, 245
BstMBI GATC 2 cut(s) 94, 242
BstSCI CCNGG 2 cut(s) 238, 245
BstSFI CTRYAG 1 cut(s) 305
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
BtgI CCRYGG 1 cut(s) 10
BtsCI GGATG 1 cut(s) 46
Cac8I GCNNGC 1 cut(s) 278
Cfr13I GGNCC 1 cut(s) 7
CpoI CGGWCCG 1 cut(s) 7
CspCI CAANNNNNGTGG 2 cut(s) 115, 150
CspI CGGWCCG 1 cut(s) 7
CviJI RGCY 6 cut(s) 15, 133, 146, 164, 197, 297
CviKI_1 RGCY 6 cut(s) 15, 133, 146, 164, 197, 297
DpnI GATC 2 cut(s) 96, 244
DpnII GATC 2 cut(s) 94, 242
Eco47I GGWCC 1 cut(s) 7
Eco88I CYCGRG 1 cut(s) 16
FaiI YATR 2 cut(s) 93, 307
FaqI GGGAC 2 cut(s) 226, 237
FauI CCCGC 1 cut(s) 214
Fnu4HI GCNGC 2 cut(s) 102, 219
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 2 cut(s) 102, 219
FspBI CTAG 3 cut(s) 77, 129, 183
GluI GCNGC 2 cut(s) 102, 219
HapII CCGG 2 cut(s) 240, 246
HinfI GANTC 2 cut(s) 150, 225
HpaII CCGG 2 cut(s) 240, 246
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 1 cut(s) 18
HpyCH4III ACNGT 1 cut(s) 11
Kzo9I GATC 2 cut(s) 94, 242
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 2 cut(s) 253, 259
MaeI CTAG 3 cut(s) 77, 129, 183
MaeIII GTNAC 1 cut(s) 85
MalI GATC 2 cut(s) 96, 244
MboI GATC 2 cut(s) 94, 242
MboII GAAGA 3 cut(s) 44, 56, 242
MflI RGATCY 1 cut(s) 242
MluCI AATT 2 cut(s) 54, 140
MlyI GAGTC 1 cut(s) 219
MnlI CCTC 9 cut(s) 14, 52, 84, 126, 129, 132, 151, 177, 181
MspA1I CMGCKG 1 cut(s) 218
MspI CCGG 2 cut(s) 240, 246
MspR9I CCNGG 2 cut(s) 240, 247
NciI CCSGG 2 cut(s) 240, 247
NdeII GATC 2 cut(s) 94, 242
NlaIV GGNNCC 2 cut(s) 63, 244
NmeAIII GCCGAG 2 cut(s) 273, 295
NmuCI GTSAC 1 cut(s) 85
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PfeI GAWTC 1 cut(s) 150
PfoI TCCNGGA 1 cut(s) 245
PkrI GCNGC 2 cut(s) 103, 220
PleI GAGTC 1 cut(s) 219
PpsI GAGTC 1 cut(s) 219
PspN4I GGNNCC 2 cut(s) 63, 244
PspPI GGNCC 1 cut(s) 7
PsuI RGATCY 1 cut(s) 242
Rsr2I CGGWCCG 1 cut(s) 7
RsrII CGGWCCG 1 cut(s) 7
SatI GCNGC 2 cut(s) 102, 219
Sau3AI GATC 2 cut(s) 94, 242
Sau96I GGNCC 1 cut(s) 7
SchI GAGTC 1 cut(s) 219
ScrFI CCNGG 2 cut(s) 240, 247
SetI ASST 5 cut(s) 25, 148, 166, 199, 208
SfcI CTRYAG 1 cut(s) 305
SinI GGWCC 1 cut(s) 7
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 2 cut(s) 54, 140
SsiI CCGC 4 cut(s) 102, 218, 221, 280
SspMI CTAG 3 cut(s) 77, 129, 183
StyD4I CCNGG 2 cut(s) 238, 245
TaaI ACNGT 1 cut(s) 11
TaqI TCGA 4 cut(s) 69, 148, 228, 299
TasI AATT 2 cut(s) 54, 140
TauI GCSGC 2 cut(s) 104, 221
TfiI GAWTC 1 cut(s) 150
TseFI GTSAC 1 cut(s) 85
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 2 cut(s) 57, 63
VpaK11BI GGWCC 1 cut(s) 7
XspI CTAG 3 cut(s) 77, 129, 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.