Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004550

Physical Location & Seq

Genomic Coordinates Forward (+)

7737591 .. 7738788

Gene Structure 1198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00339360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGTGGCCCGCGCTCGTCAATCCGCCGCGAGAGGCTCGTGCTCTTGCGCTCAATGCGGCTCATAATGACCTTGCCAATCAAGCGGCGAGTGTTCGCGGCCAATTGGATGATCGGGCCTCTCGCATGAGGGAGATAAGGCTCCGAATGTCGAATGTTGGTTTAGAAACACGAGGGGGCTCCGAGTGCGGGTTCTCCGGTCATGGGTGTTCATCTTTGTTAGAATCCCGCATACGGAGCTCAAATGGGGCCGGGAGGAAGGCCGCTTTGTATTTTCGTCTTCTTCCCTTTTCCGTTTCCTTTCTTCCGGATCCGGCGCGAGAAGTGTCTTCTAGATGGAAGGGGGCTTTGGTGGCCACCGTGTCCTTCTCGCTCTCGGAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

13.8

Weight (kDa)

10.63

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004550)

Species	Orthologous Gene IDs
malus_domestica	MD12G1127500.v1.1 MD12G1127800.v1.1
pyrus_communis	pycom15g22880
rosa_chinensis	RchiOBHm_Chr3g0490741 RchiOBHm_Chr3g0490781 RchiOBHm_Chr5g0036381 RchiOBHm_Chr7g0204711
rosa_multiflora	Rmu_co8157836.1_g000001 Rmu_co8197550.1_g000002 Rmu_co8285827.1_g000001 Rmu_sc0000962.1_g000051 Rmu_sc0001049.1_g000003 Rmu_sc0002263.1_g000051 Rmu_sc0002489.1_g000041 Rmu_sc0004142.1_g000006 Rmu_sc0005425.1_g000014 Rmu_sc0037878.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137800 Rroxscaffold_3G00248860 Rroxscaffold_5G00339360 Rroxscaffold_5G00378250 Rroxscaffold_6G00390190 Rroxscaffold_6G00393530 Rroxscaffold_7G00199500
rosa_samantha	Rh1BG194600 Rh3DG134500 Rh3DG149400 Rh3DG157200 Rh3DG157400 Rh4BG185400 Rh5CG399000
rosa_wichuraiana	Rw3G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	11, 28, 96, 316
AccIII	TCCGGA	1 cut(s)	304
AciI	CCGC	9 cut(s)	9, 23, 26, 56, 83, 96, 186, 226, 261
AclWI	GGATC	2 cut(s)	302, 315
AcoI	YGGCCR	2 cut(s)	97, 351
AfiI	CCNNNNNNNGG	3 cut(s)	186, 201, 231
AjuI	GAANNNNNNNTTGG	2 cut(s)	329, 361
AluBI	AGCT	1 cut(s)	237
AluI	AGCT	1 cut(s)	237
Alw21I	GWGCWC	2 cut(s)	43, 239
AlwI	GGATC	2 cut(s)	302, 315
Aor13HI	TCCGGA	1 cut(s)	304
AoxI	GGCC	6 cut(s)	5, 97, 114, 246, 258, 351
AspLEI	GCGC	3 cut(s)	13, 49, 316
AspS9I	GGNCC	3 cut(s)	6, 114, 246
AsuC2I	CCSGG	1 cut(s)	250
BalI	TGGCCA	1 cut(s)	353
BamHI	GGATCC	1 cut(s)	307
BanII	GRGCYC	2 cut(s)	179, 239
BauI	CACGAG	2 cut(s)	36, 168
BbsI	GAAGAC	2 cut(s)	269, 318
Bbv12I	GWGCWC	2 cut(s)	43, 239
BccI	CCATC	1 cut(s)	327
BcnI	CCSGG	1 cut(s)	250
BfaI	CTAG	1 cut(s)	330
BisI	GCNGC	5 cut(s)	26, 57, 84, 97, 261
BlsI	GCNGC	5 cut(s)	27, 58, 85, 98, 262
Bme1390I	CCNGG	1 cut(s)	250
BmgT120I	GGNCC	3 cut(s)	6, 114, 246
BmiI	GGNNCC	4 cut(s)	140, 178, 247, 309
BmrFI	CCNGG	1 cut(s)	250
BpiI	GAAGAC	2 cut(s)	269, 318
BpuMI	CCSGG	1 cut(s)	250
BsaWI	WCCGGW	2 cut(s)	194, 304
Bsc4I	CCNNNNNNNGG	3 cut(s)	186, 201, 231
BseAI	TCCGGA	1 cut(s)	304
BseGI	GGATG	1 cut(s)	112
BseLI	CCNNNNNNNGG	3 cut(s)	186, 201, 231
Bsh1236I	CGCG	4 cut(s)	11, 28, 96, 316
BshFI	GGCC	6 cut(s)	7, 99, 116, 248, 260, 353
BsiHKAI	GWGCWC	2 cut(s)	43, 239
BsiSI	CCGG	4 cut(s)	195, 249, 305, 311
BslI	CCNNNNNNNGG	3 cut(s)	186, 201, 231
BsnI	GGCC	6 cut(s)	7, 99, 116, 248, 260, 353
Bsp1286I	GDGCHC	3 cut(s)	43, 179, 239
Bsp13I	TCCGGA	1 cut(s)	304
Bsp143I	GATC	2 cut(s)	109, 307
BspACI	CCGC	9 cut(s)	9, 23, 26, 56, 83, 96, 186, 226, 261
BspANI	GGCC	6 cut(s)	7, 99, 116, 248, 260, 353
BspEI	TCCGGA	1 cut(s)	304
BspFNI	CGCG	4 cut(s)	11, 28, 96, 316
BspLI	GGNNCC	4 cut(s)	140, 178, 247, 309
BspPI	GGATC	2 cut(s)	302, 315
BssMI	GATC	2 cut(s)	109, 307
BssSI	CACGAG	2 cut(s)	36, 168
Bst2BI	CACGAG	2 cut(s)	36, 168
Bst4CI	ACNGT	1 cut(s)	358
BstC8I	GCNNGC	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	112
BstFNI	CGCG	4 cut(s)	11, 28, 96, 316
BstHHI	GCGC	3 cut(s)	13, 49, 316
BstKTI	GATC	2 cut(s)	112, 310
BstMBI	GATC	2 cut(s)	109, 307
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 80, 183, 234, 350
BstSCI	CCNGG	1 cut(s)	248
BstUI	CGCG	4 cut(s)	11, 28, 96, 316
BstV2I	GAAGAC	2 cut(s)	269, 318
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BsuRI	GGCC	6 cut(s)	7, 99, 116, 248, 260, 353
BtsCI	GGATG	1 cut(s)	112
Cac8I	GCNNGC	1 cut(s)	9
CfoI	GCGC	3 cut(s)	13, 49, 316
Cfr13I	GGNCC	3 cut(s)	6, 114, 246
CviAII	CATG	2 cut(s)	124, 200
DpnI	GATC	2 cut(s)	111, 309
DpnII	GATC	2 cut(s)	109, 307
EaeI	YGGCCR	2 cut(s)	97, 351
EciI	GGCGGA	1 cut(s)	12
Ecl136II	GAGCTC	1 cut(s)	237
Eco24I	GRGCYC	2 cut(s)	179, 239
Eco53kI	GAGCTC	1 cut(s)	237
EcoICRI	GAGCTC	1 cut(s)	237
EcoT38I	GRGCYC	2 cut(s)	179, 239
FaeI	CATG	2 cut(s)	127, 203
FaiI	YATR	4 cut(s)	63, 125, 201, 230
FatI	CATG	2 cut(s)	123, 199
FauI	CCCGC	3 cut(s)	16, 179, 233
Fnu4HI	GCNGC	5 cut(s)	26, 57, 84, 97, 261
FokI	GGATG	1 cut(s)	119
FriOI	GRGCYC	2 cut(s)	179, 239
Fsp4HI	GCNGC	5 cut(s)	26, 57, 84, 97, 261
FspBI	CTAG	1 cut(s)	330
GlaI	GCGC	3 cut(s)	12, 48, 315
GluI	GCNGC	5 cut(s)	26, 57, 84, 97, 261
HaeIII	GGCC	6 cut(s)	7, 99, 116, 248, 260, 353
HapII	CCGG	4 cut(s)	195, 249, 305, 311
HhaI	GCGC	3 cut(s)	13, 49, 316
Hin1II	CATG	2 cut(s)	127, 203
Hin6I	GCGC	3 cut(s)	11, 47, 314
HinP1I	GCGC	3 cut(s)	11, 47, 314
HinfI	GANTC	1 cut(s)	221
HpaII	CCGG	4 cut(s)	195, 249, 305, 311
Hpy188I	TCNGA	3 cut(s)	143, 181, 376
Hpy188III	TCNNGA	2 cut(s)	305, 330
HpyAV	CCTTC	3 cut(s)	250, 331, 373
HpyCH4III	ACNGT	1 cut(s)	358
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 80, 183, 234, 350
Hsp92II	CATG	2 cut(s)	127, 203
HspAI	GCGC	3 cut(s)	11, 47, 314
Kpn2I	TCCGGA	1 cut(s)	304
Kzo9I	GATC	2 cut(s)	109, 307
LmnI	GCTCC	3 cut(s)	144, 182, 234
LpnPI	CCDG	4 cut(s)	208, 262, 318, 324
MaeI	CTAG	1 cut(s)	330
MalI	GATC	2 cut(s)	111, 309
MboI	GATC	2 cut(s)	109, 307
MboII	GAAGA	4 cut(s)	269, 272, 293, 318
MfeI	CAATTG	1 cut(s)	101
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	3 cut(s)	43, 179, 239
MlsI	TGGCCA	1 cut(s)	353
MluCI	AATT	1 cut(s)	101
MluNI	TGGCCA	1 cut(s)	353
MnlI	CCTC	5 cut(s)	25, 120, 127, 164, 246
Mox20I	TGGCCA	1 cut(s)	353
MroI	TCCGGA	1 cut(s)	304
MscI	TGGCCA	1 cut(s)	353
Msp20I	TGGCCA	1 cut(s)	353
MspI	CCGG	4 cut(s)	195, 249, 305, 311
MspR9I	CCNGG	1 cut(s)	250
MunI	CAATTG	1 cut(s)	101
MvnI	CGCG	4 cut(s)	11, 28, 96, 316
MwoI	GCNNNNNNNGC	5 cut(s)	53, 80, 183, 234, 350
NciI	CCSGG	1 cut(s)	250
NdeII	GATC	2 cut(s)	109, 307
NlaIII	CATG	2 cut(s)	127, 203
NlaIV	GGNNCC	4 cut(s)	140, 178, 247, 309
PfeI	GAWTC	1 cut(s)	221
PkrI	GCNGC	5 cut(s)	27, 58, 85, 98, 262
Psp124BI	GAGCTC	1 cut(s)	239
PspN4I	GGNNCC	4 cut(s)	140, 178, 247, 309
PspPI	GGNCC	3 cut(s)	6, 114, 246
PsuI	RGATCY	1 cut(s)	307
SacI	GAGCTC	1 cut(s)	239
SatI	GCNGC	5 cut(s)	26, 57, 84, 97, 261
Sau3AI	GATC	2 cut(s)	109, 307
Sau96I	GGNCC	3 cut(s)	6, 114, 246
ScrFI	CCNGG	1 cut(s)	250
SduI	GDGCHC	3 cut(s)	43, 179, 239
SetI	ASST	2 cut(s)	72, 239
Sse9I	AATT	1 cut(s)	101
SsiI	CCGC	9 cut(s)	9, 23, 26, 56, 83, 96, 186, 226, 261
SspMI	CTAG	1 cut(s)	330
SstI	GAGCTC	1 cut(s)	239
StyD4I	CCNGG	1 cut(s)	248
TaaI	ACNGT	1 cut(s)	358
TaqI	TCGA	1 cut(s)	149
TasI	AATT	1 cut(s)	101
TauI	GCSGC	5 cut(s)	28, 59, 86, 99, 263
TfiI	GAWTC	1 cut(s)	221
TspDTI	ATGAA	1 cut(s)	198
TspGWI	ACGGA	2 cut(s)	247, 280
XbaI	TCTAGA	1 cut(s)	329
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.