Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004550

Physical Location & Seq

Genomic Coordinates Forward (+)

42325646 .. 42328091

Gene Structure 2446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00248860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCCGGACCTAAAAATAGTCCTTTCTAGGCGATTCCTCCTCCCCTTGATGATGGCTTTACGCCGGTGGATGGATCAAAGCGAAAGAGCCCTCCTAGCCTCTCATCGCGCCATCTCCTGCTTGGATATTCATCTTGCCACCGACCACGTAAGCTACGAGCTCTATGCCCCTAACCACTTTGCTCGCCAATTTGGGTTGGCCCGGTTGGTACCCTCACCTCCGGTTGATTACGCCAATTACTACACCTCTTGGGGGAGATTATCCCCTCCGGATAAGCCTCCGAAGTTAGACTTAGAAGCCCGGATCCAACATCTCCAAGCTCGTTTGGCCCGTGTGAACAACCGGCTCAACGCGGAGGAATCCCGATTGGACGCTCCTTTGGCTGCCTCCAAAGAATTGACTTGTCGCTTGGCCCAAGCCGAAGAACGAGCCTTGTTGATTGAAAATCGGGCCCTTGCGCAAGCCTCCGAGGTTGAGGTGCTTTGTGTGAAGCTTGATTTTGCGGGCCGGGCACTTTATGCCTCTTATGACTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

20.24

Weight (kDa)

8.48

Isoelectric Point (pI)

57.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004550)

Species	Orthologous Gene IDs
malus_domestica	MD12G1127500.v1.1 MD12G1127800.v1.1
pyrus_communis	pycom15g22880
rosa_chinensis	RchiOBHm_Chr3g0490741 RchiOBHm_Chr3g0490781 RchiOBHm_Chr5g0036381 RchiOBHm_Chr7g0204711
rosa_multiflora	Rmu_co8157836.1_g000001 Rmu_co8197550.1_g000002 Rmu_co8285827.1_g000001 Rmu_sc0000962.1_g000051 Rmu_sc0001049.1_g000003 Rmu_sc0002263.1_g000051 Rmu_sc0002489.1_g000041 Rmu_sc0004142.1_g000006 Rmu_sc0005425.1_g000014 Rmu_sc0037878.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137800 Rroxscaffold_3G00248860 Rroxscaffold_5G00339360 Rroxscaffold_5G00378250 Rroxscaffold_6G00390190 Rroxscaffold_6G00393530 Rroxscaffold_7G00199500
rosa_samantha	Rh1BG194600 Rh3DG134500 Rh3DG149400 Rh3DG157200 Rh3DG157400 Rh4BG185400 Rh5CG399000
rosa_wichuraiana	Rw3G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	459
Acc65I	GGTACC	1 cut(s)	208
AccB1I	GGYRCC	1 cut(s)	208
AccII	CGCG	2 cut(s)	108, 353
AccIII	TCCGGA	1 cut(s)	268
AciI	CCGC	2 cut(s)	353, 503
AclWI	GGATC	3 cut(s)	81, 298, 311
AfaI	GTAC	1 cut(s)	210
AfiI	CCNNNNNNNGG	2 cut(s)	70, 252
AgsI	TTSAA	1 cut(s)	443
AluBI	AGCT	4 cut(s)	153, 160, 320, 493
AluI	AGCT	4 cut(s)	153, 160, 320, 493
Alw21I	GWGCWC	1 cut(s)	162
AlwI	GGATC	3 cut(s)	81, 298, 311
Aor13HI	TCCGGA	1 cut(s)	268
AoxI	GGCC	5 cut(s)	198, 327, 411, 450, 505
ApaI	GGGCCC	1 cut(s)	454
ApeKI	GCWGC	1 cut(s)	383
Asp718I	GGTACC	1 cut(s)	208
AspLEI	GCGC	2 cut(s)	110, 460
AspS9I	GGNCC	7 cut(s)	7, 199, 328, 412, 450, 451, 505
AsuC2I	CCSGG	3 cut(s)	202, 301, 509
AsuHPI	GGTGA	1 cut(s)	207
AvaII	GGWCC	1 cut(s)	7
BaeGI	GKGCMC	2 cut(s)	454, 514
BamHI	GGATCC	1 cut(s)	303
BanI	GGYRCC	1 cut(s)	208
BanII	GRGCYC	3 cut(s)	91, 162, 454
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	370
BccI	CCATC	3 cut(s)	46, 64, 119
BcgI	CGANNNNNNTGC	2 cut(s)	146, 180
BcnI	CCSGG	3 cut(s)	202, 301, 509
BfaI	CTAG	2 cut(s)	27, 95
BisI	GCNGC	1 cut(s)	384
BlsI	GCNGC	1 cut(s)	385
Bme1390I	CCNGG	3 cut(s)	202, 301, 509
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	7 cut(s)	7, 199, 328, 412, 450, 451, 505
BmiI	GGNNCC	3 cut(s)	210, 305, 452
BmrFI	CCNGG	3 cut(s)	202, 301, 509
BpuMI	CCSGG	3 cut(s)	202, 301, 509
BsaAI	YACGTR	1 cut(s)	148
BsaBI	GATNNNNATC	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	468
BsaWI	WCCGGW	2 cut(s)	220, 268
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 252
Bse118I	RCCGGY	2 cut(s)	63, 342
Bse8I	GATNNNNATC	1 cut(s)	129
BseAI	TCCGGA	1 cut(s)	268
BseDI	CCNNGG	1 cut(s)	468
BseGI	GGATG	1 cut(s)	75
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	2 cut(s)	70, 252
BseRI	GAGGAG	1 cut(s)	29
BseSI	GKGCMC	2 cut(s)	454, 514
BseXI	GCAGC	1 cut(s)	370
Bsh1236I	CGCG	2 cut(s)	108, 353
BshFI	GGCC	5 cut(s)	200, 329, 413, 452, 507
BshNI	GGYRCC	1 cut(s)	208
BsiHKAI	GWGCWC	1 cut(s)	162
BsiSI	CCGG	8 cut(s)	5, 64, 202, 221, 269, 301, 343, 508
BslI	CCNNNNNNNGG	2 cut(s)	70, 252
BsnI	GGCC	5 cut(s)	200, 329, 413, 452, 507
Bsp120I	GGGCCC	1 cut(s)	450
Bsp1286I	GDGCHC	4 cut(s)	91, 162, 454, 514
Bsp13I	TCCGGA	1 cut(s)	268
Bsp143I	GATC	2 cut(s)	73, 303
BspACI	CCGC	2 cut(s)	353, 503
BspANI	GGCC	5 cut(s)	200, 329, 413, 452, 507
BspEI	TCCGGA	1 cut(s)	268
BspFNI	CGCG	2 cut(s)	108, 353
BspLI	GGNNCC	3 cut(s)	210, 305, 452
BspPI	GGATC	3 cut(s)	81, 298, 311
BspT107I	GGYRCC	1 cut(s)	208
BsrFI	RCCGGY	2 cut(s)	63, 342
BssAI	RCCGGY	2 cut(s)	63, 342
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	2 cut(s)	73, 303
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstBAI	YACGTR	1 cut(s)	148
BstC8I	GCNNGC	3 cut(s)	184, 462, 505
BstDEI	CTNAG	1 cut(s)	292
BstF5I	GGATG	1 cut(s)	75
BstFNI	CGCG	2 cut(s)	108, 353
BstHHI	GCGC	2 cut(s)	110, 460
BstKTI	GATC	2 cut(s)	76, 306
BstMBI	GATC	2 cut(s)	73, 303
BstMWI	GCNNNNNNNGC	5 cut(s)	95, 326, 380, 509, 518
BstSCI	CCNGG	3 cut(s)	200, 299, 507
BstSLI	GKGCMC	2 cut(s)	454, 514
BstUI	CGCG	2 cut(s)	108, 353
BstV1I	GCAGC	1 cut(s)	370
BstX2I	RGATCY	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	303
BsuRI	GGCC	5 cut(s)	200, 329, 413, 452, 507
BtgZI	GCGATG	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	75
Cac8I	GCNNGC	3 cut(s)	184, 462, 505
CfoI	GCGC	2 cut(s)	110, 460
Cfr10I	RCCGGY	2 cut(s)	63, 342
Cfr13I	GGNCC	7 cut(s)	7, 199, 328, 412, 450, 451, 505
CseI	GACGC	1 cut(s)	380
Csp6I	GTAC	1 cut(s)	209
CviQI	GTAC	1 cut(s)	209
DdeI	CTNAG	1 cut(s)	292
DpnI	GATC	2 cut(s)	75, 305
DpnII	GATC	2 cut(s)	73, 303
Ecl136II	GAGCTC	1 cut(s)	160
Eco24I	GRGCYC	3 cut(s)	91, 162, 454
Eco47I	GGWCC	1 cut(s)	7
Eco53kI	GAGCTC	1 cut(s)	160
EcoICRI	GAGCTC	1 cut(s)	160
EcoO109I	RGGNCCY	1 cut(s)	451
EcoT38I	GRGCYC	3 cut(s)	91, 162, 454
FaiI	YATR	4 cut(s)	165, 519, 528, 535
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FauI	CCCGC	1 cut(s)	496
Fnu4HI	GCNGC	1 cut(s)	384
FokI	GGATG	1 cut(s)	82
FriOI	GRGCYC	3 cut(s)	91, 162, 454
Fsp4HI	GCNGC	1 cut(s)	384
FspBI	CTAG	2 cut(s)	27, 95
FspI	TGCGCA	1 cut(s)	459
GlaI	GCGC	2 cut(s)	109, 459
GluI	GCNGC	1 cut(s)	384
HaeIII	GGCC	5 cut(s)	200, 329, 413, 452, 507
HapII	CCGG	8 cut(s)	5, 64, 202, 221, 269, 301, 343, 508
HgaI	GACGC	1 cut(s)	380
HhaI	GCGC	2 cut(s)	110, 460
Hin6I	GCGC	2 cut(s)	108, 458
HinP1I	GCGC	2 cut(s)	108, 458
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	2 cut(s)	33, 359
HpaII	CCGG	8 cut(s)	5, 64, 202, 221, 269, 301, 343, 508
HphI	GGTGA	1 cut(s)	207
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	2 cut(s)	282, 469
Hpy188III	TCNNGA	2 cut(s)	269, 363
Hpy8I	GTNNAC	1 cut(s)	337
HpyCH4IV	ACGT	1 cut(s)	147
HpyF10VI	GCNNNNNNNGC	5 cut(s)	95, 326, 380, 509, 518
HpyF3I	CTNAG	1 cut(s)	292
HpySE526I	ACGT	1 cut(s)	147
HspAI	GCGC	2 cut(s)	108, 458
Kpn2I	TCCGGA	1 cut(s)	268
KpnI	GGTACC	1 cut(s)	212
Kzo9I	GATC	2 cut(s)	73, 303
LmnI	GCTCC	1 cut(s)	379
LpnPI	CCDG	9 cut(s)	18, 77, 130, 215, 234, 282, 314, 356, 521
Lsp1109I	GCAGC	1 cut(s)	370
MaeI	CTAG	2 cut(s)	27, 95
MaeII	ACGT	1 cut(s)	147
MalI	GATC	2 cut(s)	75, 305
MboI	GATC	2 cut(s)	73, 303
MboII	GAAGA	1 cut(s)	434
MflI	RGATCY	1 cut(s)	303
MhlI	GDGCHC	4 cut(s)	91, 162, 454, 514
MluCI	AATT	3 cut(s)	188, 235, 395
MmeI	TCCRAC	1 cut(s)	331
MroI	TCCGGA	1 cut(s)	268
MspI	CCGG	8 cut(s)	5, 64, 202, 221, 269, 301, 343, 508
MspR9I	CCNGG	3 cut(s)	202, 301, 509
MvnI	CGCG	2 cut(s)	108, 353
MwoI	GCNNNNNNNGC	5 cut(s)	95, 326, 380, 509, 518
NciI	CCSGG	3 cut(s)	202, 301, 509
NdeII	GATC	2 cut(s)	73, 303
NlaIV	GGNNCC	3 cut(s)	210, 305, 452
NsbI	TGCGCA	1 cut(s)	459
PcsI	WCGNNNNNNNCGW	2 cut(s)	153, 328
PfeI	GAWTC	2 cut(s)	33, 359
PkrI	GCNGC	1 cut(s)	385
Ppu21I	YACGTR	1 cut(s)	148
Psp124BI	GAGCTC	1 cut(s)	162
PspN4I	GGNNCC	3 cut(s)	210, 305, 452
PspOMI	GGGCCC	1 cut(s)	450
PspPI	GGNCC	7 cut(s)	7, 199, 328, 412, 450, 451, 505
PsuI	RGATCY	1 cut(s)	303
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
SacI	GAGCTC	1 cut(s)	162
SatI	GCNGC	1 cut(s)	384
Sau3AI	GATC	2 cut(s)	73, 303
Sau96I	GGNCC	7 cut(s)	7, 199, 328, 412, 450, 451, 505
ScrFI	CCNGG	3 cut(s)	202, 301, 509
SduI	GDGCHC	4 cut(s)	91, 162, 454, 514
SgrAI	CRCCGGYG	1 cut(s)	63
SinI	GGWCC	1 cut(s)	7
Sse9I	AATT	3 cut(s)	188, 235, 395
SsiI	CCGC	2 cut(s)	353, 503
SspMI	CTAG	2 cut(s)	27, 95
SstI	GAGCTC	1 cut(s)	162
StyD4I	CCNGG	3 cut(s)	200, 299, 507
TaiI	ACGT	1 cut(s)	150
TasI	AATT	3 cut(s)	188, 235, 395
TfiI	GAWTC	2 cut(s)	33, 359
TseI	GCWGC	1 cut(s)	383
TspDTI	ATGAA	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	7
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XspI	CTAG	2 cut(s)	27, 95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.