Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001049.1

Orthogroup ID

OG0004550

Physical Location & Seq

Genomic Coordinates Forward (+)

9785 .. 10504

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001049.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atggccggcgggacgtacatcctagatttgggggacgaggcgagcagtggtggtctcttgatttcagaattagtcgaggcgagtgttgaggccgaaggttctgctctcggagctgctcatttccaacactctactgatgaacctcacattgaatttccaaagtctctcgcggctgagataattgaggaaccaatcgaccctctagcattggtgacttatgatcgtgttgtgaatcctcctcctcctcctcccactaggcttgaaaagctagctcgaatccttgaggaaactcctcctaccgcagctgaactagcgaggacagagcttcgaaaccttttgggacagcgacggctggggcctgaagaactcccgaagatttgggaagccattgtgttccttcgccgagagcatgcagtcaattcaactcagctcgacactatagagaagctgttgaaagaccttgacgttgcccgcgctcgccaatctgccatggaggctcgagctcgtgcggcccacgtggtacggaataaccttgctagtcagatggagactctttgcggcaccttgattgatcgggccactcacatgggggagataaggctccagaagttagacttagaagcccagatccgacatctccaagctcgtttggcccatgtgaacaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

222

Amino Acids

24.48

Weight (kDa)

5.31

Isoelectric Point (pI)

48.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004550)

Species	Orthologous Gene IDs
malus_domestica	MD12G1127500.v1.1 MD12G1127800.v1.1
pyrus_communis	pycom15g22880
rosa_chinensis	RchiOBHm_Chr3g0490741 RchiOBHm_Chr3g0490781 RchiOBHm_Chr5g0036381 RchiOBHm_Chr7g0204711
rosa_multiflora	Rmu_co8157836.1_g000001 Rmu_co8197550.1_g000002 Rmu_co8285827.1_g000001 Rmu_sc0000962.1_g000051 Rmu_sc0001049.1_g000003 Rmu_sc0002263.1_g000051 Rmu_sc0002489.1_g000041 Rmu_sc0004142.1_g000006 Rmu_sc0005425.1_g000014 Rmu_sc0037878.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137800 Rroxscaffold_3G00248860 Rroxscaffold_5G00339360 Rroxscaffold_5G00378250 Rroxscaffold_6G00390190 Rroxscaffold_6G00393530 Rroxscaffold_7G00199500
rosa_samantha	Rh1BG194600 Rh3DG134500 Rh3DG149400 Rh3DG157200 Rh3DG157400 Rh4BG185400 Rh5CG399000
rosa_wichuraiana	Rw3G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	560
AccII	CGCG	2 cut(s)	170, 474
AciI	CCGC	6 cut(s)	9, 170, 300, 472, 509, 558
AclWI	GGATC	1 cut(s)	622
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	152
AcuI	CTGAAG	1 cut(s)	381
AcvI	CACGTG	1 cut(s)	517
AfaI	GTAC	2 cut(s)	17, 522
AfiI	CCNNNNNNNGG	1 cut(s)	28
AgsI	TTSAA	4 cut(s)	152, 263, 423, 454
AluBI	AGCT	9 cut(s)	113, 268, 272, 305, 325, 430, 448, 503, 644
AluI	AGCT	9 cut(s)	113, 268, 272, 305, 325, 430, 448, 503, 644
Alw21I	GWGCWC	1 cut(s)	505
Alw26I	GTCTC	3 cut(s)	59, 168, 542
AlwI	GGATC	1 cut(s)	622
Ama87I	CYCGRG	1 cut(s)	498
AoxI	GGCC	6 cut(s)	3, 90, 356, 510, 576, 651
ApeKI	GCWGC	2 cut(s)	113, 302
ApoI	RAATTY	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	476
AspS9I	GGNCC	4 cut(s)	356, 511, 576, 652
AsuHPI	GGTGA	1 cut(s)	223
AsuII	TTCGAA	1 cut(s)	328
AsuNHI	GCTAGC	1 cut(s)	268
AvaI	CYCGRG	1 cut(s)	498
BanI	GGYRCC	1 cut(s)	560
BanII	GRGCYC	1 cut(s)	505
BauI	CACGAG	1 cut(s)	504
BbrPI	CACGTG	1 cut(s)	517
Bbv12I	GWGCWC	1 cut(s)	505
BbvI	GCAGC	2 cut(s)	100, 314
BccI	CCATC	1 cut(s)	538
BceAI	ACGGC	1 cut(s)	365
BcgI	CGANNNNNNTGC	2 cut(s)	83, 117
BcoDI	GTCTC	3 cut(s)	59, 168, 542
BfaI	CTAG	7 cut(s)	23, 203, 255, 269, 311, 537, 667
BfmI	CTRYAG	1 cut(s)	438
BglI	GCCNNNNNGGC	1 cut(s)	494
BisI	GCNGC	5 cut(s)	114, 171, 303, 510, 559
BlsI	GCNGC	5 cut(s)	115, 172, 304, 511, 560
BmeT110I	CYCGRG	1 cut(s)	498
BmgT120I	GGNCC	4 cut(s)	356, 511, 576, 652
BmiI	GGNNCC	4 cut(s)	189, 357, 562, 602
BmtI	GCTAGC	1 cut(s)	272
BpmI	CTGGAG	1 cut(s)	587
Bpu14I	TTCGAA	1 cut(s)	328
BpuEI	CTTGAG	1 cut(s)	302
BsaAI	YACGTR	1 cut(s)	517
BsaI	GGTCTC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	489
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse118I	RCCGGY	1 cut(s)	5
BseDI	CCNNGG	1 cut(s)	489
BseGI	GGATG	1 cut(s)	18
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseMII	CTCAG	2 cut(s)	165, 440
BseRI	GAGGAG	5 cut(s)	228, 231, 234, 237, 282
BseXI	GCAGC	2 cut(s)	100, 314
BseYI	CCCAGC	1 cut(s)	352
Bsh1236I	CGCG	2 cut(s)	170, 474
BshFI	GGCC	6 cut(s)	5, 92, 358, 512, 578, 653
BshNI	GGYRCC	1 cut(s)	560
BsiHKAI	GWGCWC	1 cut(s)	505
BsiHKCI	CYCGRG	1 cut(s)	498
BsiSI	CCGG	1 cut(s)	6
BslFI	GGGAC	3 cut(s)	25, 47, 354
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmAI	GTCTC	3 cut(s)	59, 168, 542
BsmFI	GGGAC	3 cut(s)	25, 47, 354
BsnI	GGCC	6 cut(s)	5, 92, 358, 512, 578, 653
Bso31I	GGTCTC	1 cut(s)	59
BsoBI	CYCGRG	1 cut(s)	498
Bsp119I	TTCGAA	1 cut(s)	328
Bsp1286I	GDGCHC	1 cut(s)	505
Bsp143I	GATC	3 cut(s)	220, 571, 627
Bsp19I	CCATGG	1 cut(s)	489
BspACI	CCGC	6 cut(s)	9, 170, 300, 472, 509, 558
BspANI	GGCC	6 cut(s)	5, 92, 358, 512, 578, 653
BspCNI	CTCAG	2 cut(s)	166, 439
BspFNI	CGCG	2 cut(s)	170, 474
BspLI	GGNNCC	4 cut(s)	189, 357, 562, 602
BspOI	GCTAGC	1 cut(s)	272
BspPI	GGATC	1 cut(s)	622
BspT104I	TTCGAA	1 cut(s)	328
BspT107I	GGYRCC	1 cut(s)	560
BspTNI	GGTCTC	1 cut(s)	59
BsrFI	RCCGGY	1 cut(s)	5
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	1 cut(s)	489
BssMI	GATC	3 cut(s)	220, 571, 627
BssSI	CACGAG	1 cut(s)	504
BssT1I	CCWWGG	1 cut(s)	489
Bst2BI	CACGAG	1 cut(s)	504
BstBAI	YACGTR	1 cut(s)	517
BstBI	TTCGAA	1 cut(s)	328
BstC8I	GCNNGC	6 cut(s)	7, 43, 270, 411, 472, 478
BstDEI	CTNAG	3 cut(s)	174, 426, 616
BstDSI	CCRYGG	1 cut(s)	489
BstF5I	GGATG	1 cut(s)	18
BstFNI	CGCG	2 cut(s)	170, 474
BstHHI	GCGC	1 cut(s)	476
BstKTI	GATC	3 cut(s)	223, 574, 630
BstMAI	GTCTC	3 cut(s)	59, 168, 542
BstMBI	GATC	3 cut(s)	220, 571, 627
BstMWI	GCNNNNNNNGC	6 cut(s)	110, 265, 311, 494, 509, 650
BstNSI	RCATGY	1 cut(s)	413
BstSFI	CTRYAG	1 cut(s)	438
BstUI	CGCG	2 cut(s)	170, 474
BstV1I	GCAGC	2 cut(s)	100, 314
BstX2I	RGATCY	1 cut(s)	627
BstXI	CCANNNNNNTGG	1 cut(s)	586
BstYI	RGATCY	1 cut(s)	627
BsuRI	GGCC	6 cut(s)	5, 92, 358, 512, 578, 653
BtgI	CCRYGG	1 cut(s)	489
BtsCI	GGATG	1 cut(s)	18
BtsI	GCAGTG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	52
Cac8I	GCNNGC	6 cut(s)	7, 43, 270, 411, 472, 478
CfoI	GCGC	1 cut(s)	476
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	4 cut(s)	356, 511, 576, 652
Csp6I	GTAC	2 cut(s)	16, 521
CspCI	CAANNNNNGTGG	2 cut(s)	241, 276
CviAII	CATG	4 cut(s)	410, 490, 586, 656
CviQI	GTAC	2 cut(s)	16, 521
DdeI	CTNAG	3 cut(s)	174, 426, 616
DpnI	GATC	3 cut(s)	222, 573, 629
DpnII	GATC	3 cut(s)	220, 571, 627
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	503
Eco130I	CCWWGG	1 cut(s)	489
Eco24I	GRGCYC	1 cut(s)	505
Eco31I	GGTCTC	1 cut(s)	59
Eco53kI	GAGCTC	1 cut(s)	503
Eco57I	CTGAAG	1 cut(s)	381
Eco72I	CACGTG	1 cut(s)	517
Eco88I	CYCGRG	1 cut(s)	498
EcoICRI	GAGCTC	1 cut(s)	503
EcoO109I	RGGNCCY	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	489
EcoT38I	GRGCYC	1 cut(s)	505
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	4 cut(s)	413, 493, 589, 659
FaiI	YATR	6 cut(s)	219, 411, 440, 491, 587, 657
FalI	AAGNNNNNCTT	2 cut(s)	599, 631
FaqI	GGGAC	3 cut(s)	25, 47, 354
FatI	CATG	4 cut(s)	409, 489, 585, 655
FauI	CCCGC	2 cut(s)	2, 479
Fnu4HI	GCNGC	5 cut(s)	114, 171, 303, 510, 559
FokI	GGATG	1 cut(s)	5
FriOI	GRGCYC	1 cut(s)	505
Fsp4HI	GCNGC	5 cut(s)	114, 171, 303, 510, 559
FspBI	CTAG	7 cut(s)	23, 203, 255, 269, 311, 537, 667
GlaI	GCGC	1 cut(s)	475
GluI	GCNGC	5 cut(s)	114, 171, 303, 510, 559
GsaI	CCCAGC	1 cut(s)	356
GsuI	CTGGAG	1 cut(s)	587
HaeIII	GGCC	6 cut(s)	5, 92, 358, 512, 578, 653
HapII	CCGG	1 cut(s)	6
HhaI	GCGC	1 cut(s)	476
Hin1II	CATG	4 cut(s)	413, 493, 589, 659
Hin6I	GCGC	1 cut(s)	474
HinP1I	GCGC	1 cut(s)	474
HinfI	GANTC	3 cut(s)	232, 276, 550
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	1 cut(s)	661
Hpy188I	TCNGA	4 cut(s)	67, 110, 543, 632
Hpy188III	TCNNGA	3 cut(s)	58, 370, 604
Hpy8I	GTNNAC	1 cut(s)	661
Hpy99I	CGWCG	1 cut(s)	351
HpyAV	CCTTC	2 cut(s)	89, 407
HpyCH4IV	ACGT	3 cut(s)	14, 465, 516
HpyCH4V	TGCA	1 cut(s)	413
HpyF10VI	GCNNNNNNNGC	6 cut(s)	110, 265, 311, 494, 509, 650
HpyF3I	CTNAG	3 cut(s)	174, 426, 616
HpySE526I	ACGT	3 cut(s)	14, 465, 516
Hsp92II	CATG	4 cut(s)	413, 493, 589, 659
HspAI	GCGC	1 cut(s)	474
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	220, 571, 627
LmnI	GCTCC	2 cut(s)	110, 606
LpnPI	CCDG	5 cut(s)	19, 338, 372, 617, 638
Lsp1109I	GCAGC	2 cut(s)	100, 314
MaeI	CTAG	7 cut(s)	23, 203, 255, 269, 311, 537, 667
MaeII	ACGT	3 cut(s)	14, 465, 516
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	3 cut(s)	222, 573, 629
MboI	GATC	3 cut(s)	220, 571, 627
MboII	GAAGA	2 cut(s)	374, 385
MflI	RGATCY	1 cut(s)	627
MhlI	GDGCHC	1 cut(s)	505
MluCI	AATT	4 cut(s)	68, 152, 180, 418
MlyI	GAGTC	1 cut(s)	544
MmeI	TCCRAC	2 cut(s)	148, 655
MroNI	GCCGGC	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	584
MspA1I	CMGCKG	1 cut(s)	305
MspI	CCGG	1 cut(s)	6
MvnI	CGCG	2 cut(s)	170, 474
MwoI	GCNNNNNNNGC	6 cut(s)	110, 265, 311, 494, 509, 650
NaeI	GCCGGC	1 cut(s)	7
NcoI	CCATGG	1 cut(s)	489
NdeII	GATC	3 cut(s)	220, 571, 627
NgoMIV	GCCGGC	1 cut(s)	5
NheI	GCTAGC	1 cut(s)	268
NlaIII	CATG	4 cut(s)	413, 493, 589, 659
NlaIV	GGNNCC	4 cut(s)	189, 357, 562, 602
NmeAIII	GCCGAG	1 cut(s)	428
NmuCI	GTSAC	1 cut(s)	211
NspI	RCATGY	1 cut(s)	413
NspV	TTCGAA	1 cut(s)	328
PaeI	GCATGC	1 cut(s)	413
PaeR7I	CTCGAG	1 cut(s)	498
PdiI	GCCGGC	1 cut(s)	7
PfeI	GAWTC	2 cut(s)	232, 276
PkrI	GCNGC	5 cut(s)	115, 172, 304, 511, 560
PleI	GAGTC	1 cut(s)	544
PmaCI	CACGTG	1 cut(s)	517
PmlI	CACGTG	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	544
Ppu21I	YACGTR	1 cut(s)	517
Psp124BI	GAGCTC	1 cut(s)	505
PspCI	CACGTG	1 cut(s)	517
PspFI	CCCAGC	1 cut(s)	352
PspN4I	GGNNCC	4 cut(s)	189, 357, 562, 602
PspPI	GGNCC	4 cut(s)	356, 511, 576, 652
PspXI	VCTCGAGB	1 cut(s)	498
PsuI	RGATCY	1 cut(s)	627
PvuII	CAGCTG	1 cut(s)	305
RsaI	GTAC	2 cut(s)	17, 522
RsaNI	GTAC	2 cut(s)	16, 521
RseI	CAYNNNNRTG	1 cut(s)	584
SacI	GAGCTC	1 cut(s)	505
SatI	GCNGC	5 cut(s)	114, 171, 303, 510, 559
Sau3AI	GATC	3 cut(s)	220, 571, 627
Sau96I	GGNCC	4 cut(s)	356, 511, 576, 652
SchI	GAGTC	1 cut(s)	544
SduI	GDGCHC	1 cut(s)	505
SfcI	CTRYAG	1 cut(s)	438
Sfr274I	CTCGAG	1 cut(s)	498
SfuI	TTCGAA	1 cut(s)	328
SlaI	CTCGAG	1 cut(s)	498
SmiMI	CAYNNNNRTG	1 cut(s)	584
SmlI	CTYRAG	2 cut(s)	281, 498
SmoI	CTYRAG	2 cut(s)	281, 498
SphI	GCATGC	1 cut(s)	413
Sse9I	AATT	4 cut(s)	68, 152, 180, 418
SsiI	CCGC	6 cut(s)	9, 170, 300, 472, 509, 558
SspMI	CTAG	7 cut(s)	23, 203, 255, 269, 311, 537, 667
SstI	GAGCTC	1 cut(s)	505
StyI	CCWWGG	1 cut(s)	489
TaiI	ACGT	3 cut(s)	17, 468, 519
TaqI	TCGA	6 cut(s)	75, 195, 274, 328, 432, 499
TasI	AATT	4 cut(s)	68, 152, 180, 418
TauI	GCSGC	3 cut(s)	173, 512, 561
TfiI	GAWTC	2 cut(s)	232, 276
TscAI	CASTG	1 cut(s)	52
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	2 cut(s)	113, 302
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	153
TspGWI	ACGGA	1 cut(s)	538
TspRI	CASTG	1 cut(s)	52
XapI	RAATTY	1 cut(s)	152
XceI	RCATGY	1 cut(s)	413
XhoI	CTCGAG	1 cut(s)	498
XspI	CTAG	7 cut(s)	23, 203, 255, 269, 311, 537, 667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.