Rh3DG157400

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0004550
Physical Location & Seq
Forward (+)
13528452 .. 13547333
18882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG157400.1

Sequence Viewer

Length: 672 bp
ATGCAAGCAAGATTCGTGCAGGAAGAATTATGGTGTTTAACATGGATGACTGGATTTGAAGGAAACAAGGATCTGCCTGTTGTGCTAAAGACCATGATTGCAGATAGATACTATATAGCTGAATATCTGGGTTCGGCTGCATTCAGTAAGATTGTGTTGGGAAATATGATGCGTTCTAAAAGGTGTGATGAATGGCAATCGATTGTGGATAATGGTATATGGGATTTACCAGAGGAAGAAACAAGAATATTGACGATTTTGAAATTGAGTTTTGATGAATTGAAATCTCCATCGCTGAAACAATGTTTTGCATATTGCTCCATGTTCATCAAAGATTTTGAATTTGAAAAGGACGACTTGATCCAACTTTGGATGGCTCAAGGATGGCTACACCCTTCTCCCAACCAAAATAATCTAGAGATGGAAGACAAAGGCTCGAAAGAGCAAAAATTTCAGCAATGGTGGGACAGCGGCCGCGGAGCTGAGTTGGGCAAAGAAGTCGATATTGGCGACGGAGACAAAATGGGTTTGGAAATGGAGCTGAAATTGGGGCAAGTCCTGCTCTTTAGGTGCTCCGACGCCGTGCGCGACGGGTTCGACGCCAAGAAAACGGCCTCGCAGAGAGTGAACCGAAGCTTCACGGCCTTGGGTAGCCTGGTGTTGGTGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 ko04014 map03460 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

223

Amino Acids

25.68

Weight (kDa)

4.88

Isoelectric Point (pI)

35.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 108 - 146 8.2e-08 Disease resistance protein Winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 477, 588
AciI CCGC 3 cut(s) 471, 475, 477
AclWI GGATC 2 cut(s) 78, 355
AcoI YGGCCR 1 cut(s) 472
AcsI RAATTY 2 cut(s) 341, 449
AcyI GRCGYC 2 cut(s) 579, 600
AfiI CCNNNNNNNGG 1 cut(s) 661
AgsI TTSAA 5 cut(s) 59, 262, 283, 341, 347
AjnI CCWGG 1 cut(s) 654
AjuI GAANNNNNNNTTGG 2 cut(s) 489, 521
AluBI AGCT 4 cut(s) 119, 482, 541, 636
AluI AGCT 4 cut(s) 119, 482, 541, 636
Alw21I GWGCWC 1 cut(s) 575
Alw26I GTCTC 1 cut(s) 510
AlwI GGATC 2 cut(s) 78, 355
AoxI GGCC 3 cut(s) 472, 612, 642
ApeKI GCWGC 1 cut(s) 137
ApoI RAATTY 2 cut(s) 341, 449
AspLEI GCGC 1 cut(s) 588
BbsI GAAGAC 1 cut(s) 432
Bbv12I GWGCWC 1 cut(s) 575
BbvI GCAGC 1 cut(s) 124
BccI CCATC 4 cut(s) 298, 367, 378, 415
BceAI ACGGC 3 cut(s) 566, 627, 657
BcgI CGANNNNNNTGC 2 cut(s) 481, 515
BciT130I CCWGG 1 cut(s) 656
BcoDI GTCTC 1 cut(s) 510
BfaI CTAG 1 cut(s) 416
BisI GCNGC 3 cut(s) 138, 472, 475
BlsI GCNGC 3 cut(s) 139, 473, 476
Bme1390I CCNGG 1 cut(s) 656
BmrFI CCNGG 1 cut(s) 656
BmsI GCATC 1 cut(s) 159
BpiI GAAGAC 1 cut(s) 432
BpuEI CTTGAG 1 cut(s) 363
Bsa29I ATCGAT 1 cut(s) 200
BsaHI GRCGYC 2 cut(s) 579, 600
BsaJI CCNNGG 2 cut(s) 475, 645
Bsc4I CCNNNNNNNGG 1 cut(s) 661
Bse1I ACTGG 1 cut(s) 55
Bse3DI GCAATG 1 cut(s) 464
BseBI CCWGG 1 cut(s) 656
BseCI ATCGAT 1 cut(s) 200
BseDI CCNNGG 2 cut(s) 475, 645
BseGI GGATG 3 cut(s) 51, 378, 389
BseLI CCNNNNNNNGG 1 cut(s) 661
BseMI GCAATG 1 cut(s) 464
BseMII CTCAG 1 cut(s) 474
BseNI ACTGG 1 cut(s) 55
BseX3I CGGCCG 1 cut(s) 472
BseXI GCAGC 1 cut(s) 124
BsgI GTGCAG 1 cut(s) 38
Bsh1236I CGCG 2 cut(s) 477, 588
Bsh1285I CGRYCG 1 cut(s) 475
BshFI GGCC 3 cut(s) 474, 614, 644
BshVI ATCGAT 1 cut(s) 200
BsiEI CGRYCG 1 cut(s) 475
BsiHKAI GWGCWC 1 cut(s) 575
BslFI GGGAC 1 cut(s) 479
BslI CCNNNNNNNGG 1 cut(s) 661
BsmAI GTCTC 1 cut(s) 510
BsmFI GGGAC 1 cut(s) 479
BsmI GAATGC 1 cut(s) 140
BsnI GGCC 3 cut(s) 474, 614, 644
Bsp1286I GDGCHC 1 cut(s) 575
Bsp143I GATC 2 cut(s) 70, 360
BspACI CCGC 3 cut(s) 471, 475, 477
BspANI GGCC 3 cut(s) 474, 614, 644
BspCNI CTCAG 1 cut(s) 475
BspDI ATCGAT 1 cut(s) 200
BspFNI CGCG 2 cut(s) 477, 588
BspPI GGATC 2 cut(s) 78, 355
BsrDI GCAATG 1 cut(s) 464
BsrI ACTGG 1 cut(s) 55
BssECI CCNNGG 2 cut(s) 475, 645
BssMI GATC 2 cut(s) 70, 360
BssNI GRCGYC 2 cut(s) 579, 600
BssT1I CCWWGG 1 cut(s) 645
Bst2UI CCWGG 1 cut(s) 656
BstACI GRCGYC 2 cut(s) 579, 600
BstAPI GCANNNNNTGC 1 cut(s) 559
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 483
BstDSI CCRYGG 1 cut(s) 475
BstF5I GGATG 3 cut(s) 51, 378, 389
BstFNI CGCG 2 cut(s) 477, 588
BstHHI GCGC 1 cut(s) 588
BstKTI GATC 2 cut(s) 73, 363
BstMAI GTCTC 1 cut(s) 510
BstMBI GATC 2 cut(s) 70, 360
BstMCI CGRYCG 1 cut(s) 475
BstMWI GCNNNNNNNGC 2 cut(s) 82, 559
BstNI CCWGG 1 cut(s) 656
BstSCI CCNGG 1 cut(s) 654
BstUI CGCG 2 cut(s) 477, 588
BstV1I GCAGC 1 cut(s) 124
BstV2I GAAGAC 1 cut(s) 432
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BstZI CGGCCG 1 cut(s) 472
Bsu15I ATCGAT 1 cut(s) 200
BsuRI GGCC 3 cut(s) 474, 614, 644
BsuTUI ATCGAT 1 cut(s) 200
BtgI CCRYGG 1 cut(s) 475
BtgZI GCGATG 1 cut(s) 276
BtsCI GGATG 3 cut(s) 51, 378, 389
Cac8I GCNNGC 1 cut(s) 6
CciNI GCGGCCGC 1 cut(s) 472
CfoI GCGC 1 cut(s) 588
Cfr42I CCGCGG 1 cut(s) 478
ClaI ATCGAT 1 cut(s) 200
CseI GACGC 2 cut(s) 587, 608
CviAII CATG 3 cut(s) 42, 94, 322
DdeI CTNAG 1 cut(s) 483
DpnI GATC 2 cut(s) 72, 362
DpnII GATC 2 cut(s) 70, 360
EaeI YGGCCR 1 cut(s) 472
EagI CGGCCG 1 cut(s) 472
EclXI CGGCCG 1 cut(s) 472
Eco130I CCWWGG 1 cut(s) 645
Eco52I CGGCCG 1 cut(s) 472
EcoRII CCWGG 1 cut(s) 654
EcoT14I CCWWGG 1 cut(s) 645
ErhI CCWWGG 1 cut(s) 645
FaeI CATG 3 cut(s) 45, 97, 325
FalI AAGNNNNNCTT 2 cut(s) 341, 373
FaqI GGGAC 1 cut(s) 479
FatI CATG 3 cut(s) 41, 93, 321
Fnu4HI GCNGC 3 cut(s) 138, 472, 475
FokI GGATG 3 cut(s) 58, 385, 396
Fsp4HI GCNGC 3 cut(s) 138, 472, 475
FspBI CTAG 1 cut(s) 416
GlaI GCGC 1 cut(s) 587
GluI GCNGC 3 cut(s) 138, 472, 475
HaeIII GGCC 3 cut(s) 474, 614, 644
HgaI GACGC 2 cut(s) 587, 608
HhaI GCGC 1 cut(s) 588
Hin1I GRCGYC 2 cut(s) 579, 600
Hin1II CATG 3 cut(s) 45, 97, 325
Hin6I GCGC 1 cut(s) 586
HinP1I GCGC 1 cut(s) 586
HindIII AAGCTT 1 cut(s) 634
HinfI GANTC 1 cut(s) 12
Hpy166II GTNNAC 1 cut(s) 628
Hpy188I TCNGA 1 cut(s) 577
Hpy188III TCNNGA 1 cut(s) 416
Hpy8I GTNNAC 1 cut(s) 628
Hpy99I CGWCG 4 cut(s) 515, 581, 593, 602
HpyAV CCTTC 2 cut(s) 53, 405
HpyCH4V TGCA 5 cut(s) 4, 19, 101, 140, 311
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 559
HpyF3I CTNAG 1 cut(s) 483
Hsp92I GRCGYC 2 cut(s) 579, 600
Hsp92II CATG 3 cut(s) 45, 97, 325
HspAI GCGC 1 cut(s) 586
KspI CCGCGG 1 cut(s) 478
Kzo9I GATC 2 cut(s) 70, 360
LmnI GCTCC 4 cut(s) 323, 479, 538, 578
LpnPI CCDG 8 cut(s) 5, 36, 90, 113, 243, 572, 641, 668
Lsp1109I GCAGC 1 cut(s) 124
LweI GCATC 1 cut(s) 159
MaeI CTAG 1 cut(s) 416
MalI GATC 2 cut(s) 72, 362
MboI GATC 2 cut(s) 70, 360
MboII GAAGA 3 cut(s) 35, 248, 437
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 575
MluCI AATT 6 cut(s) 26, 263, 278, 341, 449, 545
MmeI TCCRAC 2 cut(s) 388, 600
MnlI CCTC 2 cut(s) 226, 625
MseI TTAA 1 cut(s) 38
MspA1I CMGCKG 2 cut(s) 471, 477
MspR9I CCNGG 1 cut(s) 656
Mva1269I GAATGC 1 cut(s) 140
MvaI CCWGG 1 cut(s) 656
MvnI CGCG 2 cut(s) 477, 588
MwoI GCNNNNNNNGC 2 cut(s) 82, 559
NdeII GATC 2 cut(s) 70, 360
NlaIII CATG 3 cut(s) 45, 97, 325
NotI GCGGCCGC 1 cut(s) 472
PcsI WCGNNNNNNNCGW 2 cut(s) 507, 585
PctI GAATGC 1 cut(s) 140
PfeI GAWTC 1 cut(s) 12
PkrI GCNGC 3 cut(s) 139, 473, 476
Psp6I CCWGG 1 cut(s) 654
PspGI CCWGG 1 cut(s) 654
PsuI RGATCY 1 cut(s) 70
SacII CCGCGG 1 cut(s) 478
SaqAI TTAA 1 cut(s) 38
SatI GCNGC 3 cut(s) 138, 472, 475
Sau3AI GATC 2 cut(s) 70, 360
ScrFI CCNGG 1 cut(s) 656
SduI GDGCHC 1 cut(s) 575
SetI ASST 6 cut(s) 121, 185, 484, 543, 572, 638
SfaNI GCATC 1 cut(s) 159
Sfr303I CCGCGG 1 cut(s) 478
SgrBI CCGCGG 1 cut(s) 478
SmlI CTYRAG 1 cut(s) 378
SmoI CTYRAG 1 cut(s) 378
Sse9I AATT 6 cut(s) 26, 263, 278, 341, 449, 545
SsiI CCGC 3 cut(s) 471, 475, 477
SspI AATATT 1 cut(s) 249
SspMI CTAG 1 cut(s) 416
StyD4I CCNGG 1 cut(s) 654
StyI CCWWGG 1 cut(s) 645
TaqI TCGA 4 cut(s) 200, 437, 501, 597
TasI AATT 6 cut(s) 26, 263, 278, 341, 449, 545
TauI GCSGC 2 cut(s) 474, 477
TfiI GAWTC 1 cut(s) 12
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TseI GCWGC 1 cut(s) 137
TspDTI ATGAA 3 cut(s) 204, 291, 316
TspGWI ACGGA 1 cut(s) 528
XapI RAATTY 2 cut(s) 341, 449
XbaI TCTAGA 1 cut(s) 415
XspI CTAG 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.