Rw3G010890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0004550
Physical Location & Seq
Reverse (-)
10487217 .. 10491282
4066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G010890.1

Sequence Viewer

Length: 591 bp
ATGGATGTGATGCTTATGCTCTTTTTGCTACACATCAAGAATAAGAGCTGCCTGCAGGAAGTGGTTAAAGCAAAGCATATATCAGCCATGATAGATTCAGTAATGGGCCTAATGGCATTTTGGGGGATTTTGATGAGCGCAATTTATTTGGATATCCTGATTTTCATAGAGAGGTGGTTACCTGGACCGTTGAAGCTATGTAACACACCGGGAATAAGAGGTGCTTACGGGAACATCTACAATCATTTTGTAAGTGATGCAATTGGAGGAGCAACTGTTATGAAATCAGAGTTAGCATTGCATGATTGGTTCTTAGAGAAAGTGAAAAAGGTTGTTTCTTGCTCTTGTGTTGTTCTTAGAGTGTCACAAGGCACTGTCATTGCTAGAGAGTTGAGTATTTGGCTCTACAATCAAGTTTTGGCCATCAAATCTAAGATCTTTTATAATATGGAATGGAACGAAAACGAGCTACAACATCTGAGGGAGCTTTTATTCAACAGGAGAAACAATGGTTGTGCAATGGGAGCAAACAGAGTCCAGGTGCACATGTTGGCTTCAAATGGAAGGTTCATGTGGTTTGGTGCATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

22.33

Weight (kDa)

9.16

Isoelectric Point (pI)

38.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 444
AcoI YGGCCR 1 cut(s) 420
AflIII ACRYGT 1 cut(s) 546
AgsI TTSAA 3 cut(s) 193, 496, 558
AjnI CCWGG 2 cut(s) 181, 537
AluBI AGCT 4 cut(s) 48, 196, 469, 487
AluI AGCT 4 cut(s) 48, 196, 469, 487
Alw21I GWGCWC 1 cut(s) 546
Alw44I GTGCAC 1 cut(s) 542
AoxI GGCC 2 cut(s) 106, 420
ApaLI GTGCAC 1 cut(s) 542
ApeKI GCWGC 1 cut(s) 48
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 2 cut(s) 106, 185
AsuC2I CCSGG 1 cut(s) 210
AvaII GGWCC 1 cut(s) 185
BaeGI GKGCMC 1 cut(s) 546
BalI TGGCCA 1 cut(s) 422
Bbv12I GWGCWC 1 cut(s) 546
BbvI GCAGC 1 cut(s) 35
BccI CCATC 1 cut(s) 431
BciT130I CCWGG 2 cut(s) 183, 539
BcnI CCSGG 1 cut(s) 210
BfaI CTAG 1 cut(s) 384
BfmI CTRYAG 1 cut(s) 53
BglII AGATCT 1 cut(s) 435
BisI GCNGC 1 cut(s) 49
BlsI GCNGC 1 cut(s) 50
Bme1390I CCNGG 3 cut(s) 183, 210, 539
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 2 cut(s) 106, 185
BmrFI CCNGG 3 cut(s) 183, 210, 539
BmsI GCATC 1 cut(s) 247
BpuMI CCSGG 1 cut(s) 210
BsaXI ACNNNNNCTCC 2 cut(s) 261, 291
Bse3DI GCAATG 3 cut(s) 296, 378, 525
BseBI CCWGG 2 cut(s) 183, 539
BseGI GGATG 1 cut(s) 10
BseMI GCAATG 3 cut(s) 296, 378, 525
BseMII CTCAG 1 cut(s) 470
BseRI GAGGAG 1 cut(s) 282
BseSI GKGCMC 1 cut(s) 546
BseXI GCAGC 1 cut(s) 35
BshFI GGCC 2 cut(s) 108, 422
BsiHKAI GWGCWC 1 cut(s) 546
BsiSI CCGG 1 cut(s) 209
BsnI GGCC 2 cut(s) 108, 422
Bsp1286I GDGCHC 1 cut(s) 546
Bsp143I GATC 1 cut(s) 435
BspANI GGCC 2 cut(s) 108, 422
BspCNI CTCAG 1 cut(s) 471
BspMAI CTGCAG 1 cut(s) 57
BsrDI GCAATG 3 cut(s) 296, 378, 525
BssMI GATC 1 cut(s) 435
Bst2UI CCWGG 2 cut(s) 183, 539
Bst4CI ACNGT 3 cut(s) 189, 277, 376
BstC8I GCNNGC 1 cut(s) 53
BstDEI CTNAG 5 cut(s) 313, 356, 432, 479, 588
BstEII GGTNACC 1 cut(s) 177
BstF5I GGATG 1 cut(s) 10
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 1 cut(s) 438
BstMBI GATC 1 cut(s) 435
BstMWI GCNNNNNNNGC 2 cut(s) 25, 524
BstNI CCWGG 2 cut(s) 183, 539
BstNSI RCATGY 1 cut(s) 550
BstPI GGTNACC 1 cut(s) 177
BstSCI CCNGG 3 cut(s) 181, 208, 537
BstSFI CTRYAG 1 cut(s) 53
BstSLI GKGCMC 1 cut(s) 546
BstV1I GCAGC 1 cut(s) 35
BstX2I RGATCY 1 cut(s) 435
BstYI RGATCY 1 cut(s) 435
BsuRI GGCC 2 cut(s) 108, 422
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 372
Cac8I GCNNGC 1 cut(s) 53
CfoI GCGC 1 cut(s) 140
Cfr13I GGNCC 2 cut(s) 106, 185
CviAII CATG 4 cut(s) 88, 302, 547, 571
CviJI RGCY 9 cut(s) 48, 86, 108, 196, 403, 422, 469, 487, 554
CviKI_1 RGCY 9 cut(s) 48, 86, 108, 196, 403, 422, 469, 487, 554
DdeI CTNAG 5 cut(s) 313, 356, 432, 479, 588
DpnI GATC 1 cut(s) 437
DpnII GATC 1 cut(s) 435
EaeI YGGCCR 1 cut(s) 420
Eco32I GATATC 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 185
Eco91I GGTNACC 1 cut(s) 177
EcoO65I GGTNACC 1 cut(s) 177
EcoRII CCWGG 2 cut(s) 181, 537
EcoRV GATATC 1 cut(s) 154
FaeI CATG 4 cut(s) 91, 305, 550, 574
FalI AAGNNNNNCTT 2 cut(s) 208, 240
FatI CATG 4 cut(s) 87, 301, 546, 570
Fnu4HI GCNGC 1 cut(s) 49
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 49
FspBI CTAG 1 cut(s) 384
GlaI GCGC 1 cut(s) 139
GluI GCNGC 1 cut(s) 49
HaeIII GGCC 2 cut(s) 108, 422
HapII CCGG 1 cut(s) 209
HhaI GCGC 1 cut(s) 140
Hin1II CATG 4 cut(s) 91, 305, 550, 574
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HinfI GANTC 2 cut(s) 95, 534
HpaII CCGG 1 cut(s) 209
Hpy166II GTNNAC 1 cut(s) 544
Hpy188I TCNGA 2 cut(s) 289, 480
Hpy188III TCNNGA 2 cut(s) 37, 157
Hpy8I GTNNAC 1 cut(s) 544
HpyAV CCTTC 1 cut(s) 558
HpyCH4III ACNGT 3 cut(s) 189, 277, 376
HpyCH4V TGCA 6 cut(s) 55, 260, 301, 518, 544, 584
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 524
HpyF3I CTNAG 5 cut(s) 313, 356, 432, 479, 588
Hsp92II CATG 4 cut(s) 91, 305, 550, 574
HspAI GCGC 1 cut(s) 138
Kzo9I GATC 1 cut(s) 435
LmnI GCTCC 3 cut(s) 269, 484, 524
LpnPI CCDG 9 cut(s) 41, 65, 168, 170, 195, 222, 484, 524, 551
Lsp1109I GCAGC 1 cut(s) 35
LweI GCATC 1 cut(s) 247
MaeI CTAG 1 cut(s) 384
MaeIII GTNAC 3 cut(s) 177, 200, 363
MalI GATC 1 cut(s) 437
MboI GATC 1 cut(s) 435
MfeI CAATTG 1 cut(s) 261
MflI RGATCY 1 cut(s) 435
MhlI GDGCHC 1 cut(s) 546
MlsI TGGCCA 1 cut(s) 422
MluCI AATT 2 cut(s) 141, 261
MluNI TGGCCA 1 cut(s) 422
MlyI GAGTC 1 cut(s) 543
MnlI CCTC 4 cut(s) 165, 212, 260, 474
Mox20I TGGCCA 1 cut(s) 422
MscI TGGCCA 1 cut(s) 422
MseI TTAA 1 cut(s) 66
Msp20I TGGCCA 1 cut(s) 422
MspI CCGG 1 cut(s) 209
MspR9I CCNGG 3 cut(s) 183, 210, 539
MunI CAATTG 1 cut(s) 261
MvaI CCWGG 2 cut(s) 183, 539
MwoI GCNNNNNNNGC 2 cut(s) 25, 524
NciI CCSGG 1 cut(s) 210
NdeII GATC 1 cut(s) 435
NlaIII CATG 4 cut(s) 91, 305, 550, 574
NmuCI GTSAC 1 cut(s) 363
NspI RCATGY 1 cut(s) 550
PciI ACATGT 1 cut(s) 546
PfeI GAWTC 1 cut(s) 95
PkrI GCNGC 1 cut(s) 50
PleI GAGTC 1 cut(s) 542
PpsI GAGTC 1 cut(s) 542
PscI ACATGT 1 cut(s) 546
PsiI TTATAA 1 cut(s) 444
Psp6I CCWGG 2 cut(s) 181, 537
PspEI GGTNACC 1 cut(s) 177
PspGI CCWGG 2 cut(s) 181, 537
PspPI GGNCC 2 cut(s) 106, 185
PstI CTGCAG 1 cut(s) 57
PsuI RGATCY 1 cut(s) 435
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 1 cut(s) 49
Sau3AI GATC 1 cut(s) 435
Sau96I GGNCC 2 cut(s) 106, 185
SbfI CCTGCAGG 1 cut(s) 57
SchI GAGTC 1 cut(s) 543
ScrFI CCNGG 3 cut(s) 183, 210, 539
SdaI CCTGCAGG 1 cut(s) 57
SduI GDGCHC 1 cut(s) 546
SfaNI GCATC 1 cut(s) 247
SfcI CTRYAG 1 cut(s) 53
SinI GGWCC 1 cut(s) 185
Sse8387I CCTGCAGG 1 cut(s) 57
Sse9I AATT 2 cut(s) 141, 261
SspMI CTAG 1 cut(s) 384
StyD4I CCNGG 3 cut(s) 181, 208, 537
TaaI ACNGT 3 cut(s) 189, 277, 376
TasI AATT 2 cut(s) 141, 261
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 1 cut(s) 379
TseFI GTSAC 1 cut(s) 363
TseI GCWGC 1 cut(s) 48
Tsp45I GTSAC 1 cut(s) 363
TspDTI ATGAA 3 cut(s) 154, 296, 559
TspRI CASTG 1 cut(s) 379
VneI GTGCAC 1 cut(s) 542
VpaK11BI GGWCC 1 cut(s) 185
XceI RCATGY 1 cut(s) 550
XspI CTAG 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.