Rh3DG157200

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0004550
Physical Location & Seq
Forward (+)
13515930 .. 13525932
10003 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG157200.1

Sequence Viewer

Length: 492 bp
ATGGCCCAAAAACTAGTGGACAAGTGGAGAATCTATCCCCAATCTTGTGGGTCGGGTATCTTCCATCCGCAACTCCATCCACATTGGTCATTGATGGATAGTCCGAGGCCTTATAAAATTTATAGAGGAGTGTTGGGAAATGTGATGCGTTCTAAAAAGTGTGATGAATGGCAATCAATTTTGGACAGTGGTATATGGGATTTACCGGAGGAAGAAAATAGAATACAGGCTATTTTGAAATTGAGTTTTGATGAACTGAAATCTCCATCATTAAAGCAATGTTTTGCATACTGCTCATTGTTCATCAAAGATTTCAAATTTGAAAAGGATGACTTGATCCAACTTTGGATGGCCCAAGGATGGCTACACCCATCTTCCGACCAAAATAATCTAGAGATGGAGGACAGGGGAGCCCCTACAAAATTAACACCCATGAGATCGGAGCCTCAGGGGACGGCCTGCTTAACGTATAGAATAGGGTCGGCCCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 ko04014 map03460 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

163

Amino Acids

18.89

Weight (kDa)

6.89

Isoelectric Point (pI)

48.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 100 - 137 1.1e-07 Disease resistance protein Winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 114
AciI CCGC 1 cut(s) 68
AclWI GGATC 1 cut(s) 331
AcsI RAATTY 2 cut(s) 117, 317
AfiI CCNNNNNNNGG 1 cut(s) 360
AgsI TTSAA 3 cut(s) 238, 316, 323
AhlI ACTAGT 1 cut(s) 13
AlwI GGATC 1 cut(s) 331
AoxI GGCC 5 cut(s) 3, 107, 351, 456, 483
ApoI RAATTY 2 cut(s) 117, 317
AspS9I GGNCC 3 cut(s) 4, 352, 484
AxyI CCTNAGG 1 cut(s) 447
BanII GRGCYC 1 cut(s) 415
BccI CCATC 8 cut(s) 72, 84, 88, 274, 343, 354, 379, 391
BceAI ACGGC 1 cut(s) 471
BcuI ACTAGT 1 cut(s) 13
BfaI CTAG 2 cut(s) 14, 392
BmgT120I GGNCC 3 cut(s) 4, 352, 484
BmiI GGNNCC 2 cut(s) 412, 444
BmsI GCATC 1 cut(s) 135
BsaJI CCNNGG 2 cut(s) 104, 355
BsaWI WCCGGW 1 cut(s) 205
Bsc4I CCNNNNNNNGG 1 cut(s) 360
Bse21I CCTNAGG 1 cut(s) 447
Bse3DI GCAATG 1 cut(s) 284
BseDI CCNNGG 2 cut(s) 104, 355
BseGI GGATG 5 cut(s) 64, 76, 334, 354, 365
BseLI CCNNNNNNNGG 1 cut(s) 360
BseMI GCAATG 1 cut(s) 284
BseMII CTCAG 1 cut(s) 461
BseRI GAGGAG 1 cut(s) 141
BshFI GGCC 5 cut(s) 5, 109, 353, 458, 485
BsiSI CCGG 1 cut(s) 206
BslFI GGGAC 1 cut(s) 466
BslI CCNNNNNNNGG 1 cut(s) 360
BsmFI GGGAC 1 cut(s) 466
BsnI GGCC 5 cut(s) 5, 109, 353, 458, 485
Bsp1286I GDGCHC 1 cut(s) 415
Bsp143I GATC 2 cut(s) 336, 437
BspACI CCGC 1 cut(s) 68
BspANI GGCC 5 cut(s) 5, 109, 353, 458, 485
BspCNI CTCAG 1 cut(s) 460
BspLI GGNNCC 2 cut(s) 412, 444
BspPI GGATC 1 cut(s) 331
BsrDI GCAATG 1 cut(s) 284
BssECI CCNNGG 2 cut(s) 104, 355
BssMI GATC 2 cut(s) 336, 437
BssT1I CCWWGG 1 cut(s) 355
Bst4CI ACNGT 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 460
BstDEI CTNAG 1 cut(s) 447
BstF5I GGATG 5 cut(s) 64, 76, 334, 354, 365
BstKTI GATC 2 cut(s) 339, 440
BstMBI GATC 2 cut(s) 336, 437
BstXI CCANNNNNNTGG 1 cut(s) 47
Bsu36I CCTNAGG 1 cut(s) 447
BsuRI GGCC 5 cut(s) 5, 109, 353, 458, 485
BtsCI GGATG 5 cut(s) 64, 76, 334, 354, 365
BtsIMutI CAGTG 1 cut(s) 193
Cac8I GCNNGC 1 cut(s) 460
Cfr13I GGNCC 3 cut(s) 4, 352, 484
CviAII CATG 1 cut(s) 433
CviJI RGCY 9 cut(s) 5, 109, 230, 353, 364, 413, 445, 458, 485
CviKI_1 RGCY 9 cut(s) 5, 109, 230, 353, 364, 413, 445, 458, 485
DdeI CTNAG 1 cut(s) 447
DpnI GATC 2 cut(s) 338, 439
DpnII GATC 2 cut(s) 336, 437
Eco130I CCWWGG 1 cut(s) 355
Eco147I AGGCCT 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 415
Eco81I CCTNAGG 1 cut(s) 447
EcoT14I CCWWGG 1 cut(s) 355
EcoT38I GRGCYC 1 cut(s) 415
ErhI CCWWGG 1 cut(s) 355
FaeI CATG 1 cut(s) 436
FaiI YATR 8 cut(s) 114, 123, 194, 196, 289, 434, 471, 490
FalI AAGNNNNNCTT 2 cut(s) 317, 349
FaqI GGGAC 1 cut(s) 466
FatI CATG 1 cut(s) 432
FokI GGATG 5 cut(s) 51, 63, 341, 361, 372
FriOI GRGCYC 1 cut(s) 415
FspBI CTAG 2 cut(s) 14, 392
HaeIII GGCC 5 cut(s) 5, 109, 353, 458, 485
HapII CCGG 1 cut(s) 206
Hin1II CATG 1 cut(s) 436
HinfI GANTC 1 cut(s) 30
HpaII CCGG 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 3 cut(s) 105, 379, 442
Hpy188III TCNNGA 1 cut(s) 392
Hpy8I GTNNAC 1 cut(s) 19
HpyCH4III ACNGT 1 cut(s) 188
HpyCH4IV ACGT 1 cut(s) 467
HpyCH4V TGCA 1 cut(s) 287
HpyF3I CTNAG 1 cut(s) 447
HpySE526I ACGT 1 cut(s) 467
Hsp92II CATG 1 cut(s) 436
Kzo9I GATC 2 cut(s) 336, 437
LmnI GCTCC 2 cut(s) 410, 442
LpnPI CCDG 5 cut(s) 212, 219, 391, 434, 472
LweI GCATC 1 cut(s) 135
MaeI CTAG 2 cut(s) 14, 392
MaeII ACGT 1 cut(s) 467
MalI GATC 2 cut(s) 338, 439
MboI GATC 2 cut(s) 336, 437
MboII GAAGA 3 cut(s) 52, 224, 366
MhlI GDGCHC 1 cut(s) 415
MluCI AATT 5 cut(s) 117, 177, 239, 317, 422
MmeI TCCRAC 2 cut(s) 364, 402
MnlI CCTC 5 cut(s) 99, 119, 202, 394, 456
MseI TTAA 3 cut(s) 272, 425, 464
MspI CCGG 1 cut(s) 206
NdeII GATC 2 cut(s) 336, 437
NlaIII CATG 1 cut(s) 436
NlaIV GGNNCC 2 cut(s) 412, 444
PceI AGGCCT 1 cut(s) 109
PfeI GAWTC 1 cut(s) 30
PsiI TTATAA 1 cut(s) 114
PspN4I GGNNCC 2 cut(s) 412, 444
PspPI GGNCC 3 cut(s) 4, 352, 484
SaqAI TTAA 3 cut(s) 272, 425, 464
Sau3AI GATC 2 cut(s) 336, 437
Sau96I GGNCC 3 cut(s) 4, 352, 484
SduI GDGCHC 1 cut(s) 415
SetI ASST 1 cut(s) 470
SfaNI GCATC 1 cut(s) 135
SpeI ACTAGT 1 cut(s) 13
Sse9I AATT 5 cut(s) 117, 177, 239, 317, 422
SseBI AGGCCT 1 cut(s) 109
SsiI CCGC 1 cut(s) 68
SspMI CTAG 2 cut(s) 14, 392
StuI AGGCCT 1 cut(s) 109
StyI CCWWGG 1 cut(s) 355
TaaI ACNGT 1 cut(s) 188
TaiI ACGT 1 cut(s) 470
TasI AATT 5 cut(s) 117, 177, 239, 317, 422
TfiI GAWTC 1 cut(s) 30
Tru1I TTAA 3 cut(s) 272, 425, 464
Tru9I TTAA 3 cut(s) 272, 425, 464
TscAI CASTG 1 cut(s) 193
TspDTI ATGAA 3 cut(s) 180, 267, 292
TspRI CASTG 1 cut(s) 193
XapI RAATTY 2 cut(s) 117, 317
XbaI TCTAGA 1 cut(s) 391
XspI CTAG 2 cut(s) 14, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.