Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8157836.1

Orthogroup ID

OG0004550

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 624

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8157836.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgcgctctaaaactagtagagatgaatggttggcaattcaagaaagcgaaatatgggacttaaccaaagaagaggatagaatcatgtcggtattgaagttgagttttaataacttgaagtcaccgcctttgaagcaatgctttgcatattgctcaatgttgaagaaagatttcgaaattgaaagagataatttgatccaactttggatggctcagggactgcttcagctttcaactgacaatcatgatgaaatggaggatacaggcaaaaaatatttttatactctattgaaaaactccttatttcaagaggtaactgaaggtggcactattaccaagtacacgatgcacgatcttgtgcatgatcttgcagaagaagtatccaaaagtgaaagcttgacacatgatttgaatgatacatgcgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03460 ko04014 map03460 map04014

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

142

Amino Acids

16.63

Weight (kDa)

4.77

Isoelectric Point (pI)

48.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004550)

Species	Orthologous Gene IDs
malus_domestica	MD12G1127500.v1.1 MD12G1127800.v1.1
pyrus_communis	pycom15g22880
rosa_chinensis	RchiOBHm_Chr3g0490741 RchiOBHm_Chr3g0490781 RchiOBHm_Chr5g0036381 RchiOBHm_Chr7g0204711
rosa_multiflora	Rmu_co8157836.1_g000001 Rmu_co8197550.1_g000002 Rmu_co8285827.1_g000001 Rmu_sc0000962.1_g000051 Rmu_sc0001049.1_g000003 Rmu_sc0002263.1_g000051 Rmu_sc0002489.1_g000041 Rmu_sc0004142.1_g000006 Rmu_sc0005425.1_g000014 Rmu_sc0037878.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137800 Rroxscaffold_3G00248860 Rroxscaffold_5G00339360 Rroxscaffold_5G00378250 Rroxscaffold_6G00390190 Rroxscaffold_6G00393530 Rroxscaffold_7G00199500
rosa_samantha	Rh1BG194600 Rh3DG134500 Rh3DG149400 Rh3DG157200 Rh3DG157400 Rh4BG185400 Rh5CG399000
rosa_wichuraiana	Rw3G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	125
AclWI	GGATC	1 cut(s)	190
AcuI	CTGAAG	2 cut(s)	209, 339
AfaI	GTAC	1 cut(s)	341
AhlI	ACTAGT	1 cut(s)	14
AluBI	AGCT	2 cut(s)	229, 396
AluI	AGCT	2 cut(s)	229, 396
AlwI	GGATC	1 cut(s)	190
AlwNI	CAGNNNCTG	1 cut(s)	220
ArsI	GACNNNNNNTTYG	2 cut(s)	391, 423
Asp700I	GAANNNNTTC	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	6
AsuHPI	GGTGA	1 cut(s)	114
AsuII	TTCGAA	1 cut(s)	174
BccI	CCATC	1 cut(s)	202
BciVI	GTATCC	2 cut(s)	253, 391
BcuI	ACTAGT	1 cut(s)	14
BfaI	CTAG	1 cut(s)	15
BfuI	GTATCC	2 cut(s)	253, 391
BmsI	GCATC	1 cut(s)	336
Bpu10I	CCTNAGC	1 cut(s)	213
Bpu14I	TTCGAA	1 cut(s)	174
Bse3DI	GCAATG	1 cut(s)	143
BseGI	GGATG	1 cut(s)	213
BseMI	GCAATG	1 cut(s)	143
BseMII	CTCAG	1 cut(s)	227
BslFI	GGGAC	2 cut(s)	71, 231
BsmFI	GGGAC	2 cut(s)	71, 231
Bsp119I	TTCGAA	1 cut(s)	174
Bsp143I	GATC	3 cut(s)	195, 352, 364
BspACI	CCGC	1 cut(s)	125
BspCNI	CTCAG	1 cut(s)	226
BspHI	TCATGA	1 cut(s)	244
BspPI	GGATC	1 cut(s)	190
BspT104I	TTCGAA	1 cut(s)	174
BsrDI	GCAATG	1 cut(s)	143
BssMI	GATC	3 cut(s)	195, 352, 364
Bst6I	CTCTTC	1 cut(s)	66
BstBI	TTCGAA	1 cut(s)	174
BstDEI	CTNAG	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	3 cut(s)	198, 355, 367
BstMBI	GATC	3 cut(s)	195, 352, 364
BstMWI	GCNNNNNNNGC	1 cut(s)	133
BstNSI	RCATGY	1 cut(s)	423
BsuI	GTATCC	2 cut(s)	253, 391
BtsCI	GGATG	1 cut(s)	213
CaiI	CAGNNNCTG	1 cut(s)	220
CciI	TCATGA	1 cut(s)	244
CfoI	GCGC	1 cut(s)	6
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	5 cut(s)	85, 245, 362, 404, 420
CviJI	RGCY	3 cut(s)	212, 229, 396
CviKI_1	RGCY	3 cut(s)	212, 229, 396
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	3 cut(s)	197, 354, 366
DpnII	GATC	3 cut(s)	195, 352, 364
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
Eco57I	CTGAAG	2 cut(s)	209, 339
FaeI	CATG	5 cut(s)	88, 248, 365, 407, 423
FaiI	YATR	8 cut(s)	55, 86, 148, 246, 282, 363, 405, 421
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FaqI	GGGAC	2 cut(s)	71, 231
FatI	CATG	5 cut(s)	84, 244, 361, 403, 419
FokI	GGATG	1 cut(s)	220
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	5 cut(s)	88, 248, 365, 407, 423
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HindIII	AAGCTT	1 cut(s)	394
HinfI	GANTC	1 cut(s)	81
HphI	GGTGA	1 cut(s)	114
Hpy166II	GTNNAC	1 cut(s)	342
Hpy188III	TCNNGA	3 cut(s)	41, 245, 308
Hpy8I	GTNNAC	1 cut(s)	342
HpyAV	CCTTC	1 cut(s)	314
HpyCH4V	TGCA	4 cut(s)	146, 349, 361, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	133
HpyF3I	CTNAG	1 cut(s)	213
Hsp92II	CATG	5 cut(s)	88, 248, 365, 407, 423
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	3 cut(s)	195, 352, 364
LpnPI	CCDG	2 cut(s)	200, 249
LweI	GCATC	1 cut(s)	336
MaeI	CTAG	1 cut(s)	15
MaeIII	GTNAC	2 cut(s)	120, 313
MalI	GATC	3 cut(s)	197, 354, 366
MboI	GATC	3 cut(s)	195, 352, 364
MboII	GAAGA	3 cut(s)	83, 175, 386
MluCI	AATT	3 cut(s)	36, 177, 190
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	3 cut(s)	67, 250, 304
MroXI	GAANNNNTTC	1 cut(s)	170
MseI	TTAA	2 cut(s)	62, 108
MwoI	GCNNNNNNNGC	1 cut(s)	133
NdeII	GATC	3 cut(s)	195, 352, 364
NlaIII	CATG	5 cut(s)	88, 248, 365, 407, 423
NmuCI	GTSAC	1 cut(s)	120
NspI	RCATGY	1 cut(s)	423
NspV	TTCGAA	1 cut(s)	174
PagI	TCATGA	1 cut(s)	244
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	81
PstNI	CAGNNNCTG	1 cut(s)	220
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
SaqAI	TTAA	2 cut(s)	62, 108
Sau3AI	GATC	3 cut(s)	195, 352, 364
SetI	ASST	4 cut(s)	231, 315, 325, 398
SfaNI	GCATC	1 cut(s)	336
SfuI	TTCGAA	1 cut(s)	174
SpeI	ACTAGT	1 cut(s)	14
Sse9I	AATT	3 cut(s)	36, 177, 190
SsiI	CCGC	1 cut(s)	125
SspI	AATATT	1 cut(s)	275
SspMI	CTAG	1 cut(s)	15
TaqI	TCGA	1 cut(s)	174
TasI	AATT	3 cut(s)	36, 177, 190
TatI	WGTACW	1 cut(s)	339
TfiI	GAWTC	1 cut(s)	81
Tru1I	TTAA	2 cut(s)	62, 108
Tru9I	TTAA	2 cut(s)	62, 108
TseFI	GTSAC	1 cut(s)	120
Tsp45I	GTSAC	1 cut(s)	120
TspDTI	ATGAA	2 cut(s)	39, 264
XceI	RCATGY	1 cut(s)	423
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.