Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002263.1

Orthogroup ID

OG0004550

Physical Location & Seq

Genomic Coordinates Forward (+)

202308 .. 202661

Gene Structure 354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002263.1_g000051.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atggaggctcgagctcgtgtggcctgcgtggtacggaataacctcgctagtcagatggagactctttgcggcaccttgaatgatcgagccactcgcatgggggagataaggctccagaagttagacttagaagcccagatcagacatctccaagctcatttggcccatttgaacaacgagctcagcgcggaggaagcccaactggatgctcccttggctgcctccgaagaattgactcgccgcttggcccaagctgaagaacgagccttgttgattgaaaatggggcccttgctgcaggcctccaggttgaggtgttttgtgtgaagcttaattttgcgggccggccactttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

12.88

Weight (kDa)

5.61

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004550)

Species	Orthologous Gene IDs
malus_domestica	MD12G1127500.v1.1 MD12G1127800.v1.1
pyrus_communis	pycom15g22880
rosa_chinensis	RchiOBHm_Chr3g0490741 RchiOBHm_Chr3g0490781 RchiOBHm_Chr5g0036381 RchiOBHm_Chr7g0204711
rosa_multiflora	Rmu_co8157836.1_g000001 Rmu_co8197550.1_g000002 Rmu_co8285827.1_g000001 Rmu_sc0000962.1_g000051 Rmu_sc0001049.1_g000003 Rmu_sc0002263.1_g000051 Rmu_sc0002489.1_g000041 Rmu_sc0004142.1_g000006 Rmu_sc0005425.1_g000014 Rmu_sc0037878.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137800 Rroxscaffold_3G00248860 Rroxscaffold_5G00339360 Rroxscaffold_5G00378250 Rroxscaffold_6G00390190 Rroxscaffold_6G00393530 Rroxscaffold_7G00199500
rosa_samantha	Rh1BG194600 Rh3DG134500 Rh3DG149400 Rh3DG157200 Rh3DG157400 Rh4BG185400 Rh5CG399000
rosa_wichuraiana	Rw3G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AccII	CGCG	1 cut(s)	188
AciI	CCGC	4 cut(s)	69, 188, 241, 338
AcoI	YGGCCR	1 cut(s)	344
AcuI	CTGAAG	1 cut(s)	276
AfaI	GTAC	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	310
AgsI	TTSAA	3 cut(s)	79, 172, 278
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	5 cut(s)	14, 155, 181, 254, 328
AluI	AGCT	5 cut(s)	14, 155, 181, 254, 328
Alw21I	GWGCWC	2 cut(s)	16, 183
Alw26I	GTCTC	1 cut(s)	53
Ama87I	CYCGRG	1 cut(s)	9
AoxI	GGCC	7 cut(s)	21, 162, 246, 285, 298, 340, 344
ApaI	GGGCCC	1 cut(s)	289
ApeKI	GCWGC	2 cut(s)	218, 293
AspLEI	GCGC	1 cut(s)	188
AspS9I	GGNCC	5 cut(s)	163, 247, 285, 286, 340
AvaI	CYCGRG	1 cut(s)	9
BaeGI	GKGCMC	1 cut(s)	289
BanI	GGYRCC	1 cut(s)	71
BanII	GRGCYC	3 cut(s)	16, 183, 289
BauI	CACGAG	1 cut(s)	15
Bbv12I	GWGCWC	2 cut(s)	16, 183
BbvI	GCAGC	2 cut(s)	205, 280
BccI	CCATC	1 cut(s)	49
BciT130I	CCWGG	1 cut(s)	305
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	1 cut(s)	48
BfmI	CTRYAG	1 cut(s)	294
BisI	GCNGC	4 cut(s)	70, 219, 241, 294
BlpI	GCTNAGC	1 cut(s)	182
BlsI	GCNGC	4 cut(s)	71, 220, 242, 295
Bme1390I	CCNGG	1 cut(s)	305
BmeT110I	CYCGRG	1 cut(s)	9
BmgT120I	GGNCC	5 cut(s)	163, 247, 285, 286, 340
BmiI	GGNNCC	4 cut(s)	73, 113, 286, 287
BmrFI	CCNGG	1 cut(s)	305
BmsI	GCATC	1 cut(s)	196
BpmI	CTGGAG	2 cut(s)	98, 287
Bpu1102I	GCTNAGC	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse118I	RCCGGY	1 cut(s)	342
Bse1I	ACTGG	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	305
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseMII	CTCAG	1 cut(s)	196
BseNI	ACTGG	1 cut(s)	207
BseSI	GKGCMC	1 cut(s)	289
BseXI	GCAGC	2 cut(s)	205, 280
Bsh1236I	CGCG	1 cut(s)	188
BshFI	GGCC	7 cut(s)	23, 164, 248, 287, 300, 342, 346
BshNI	GGYRCC	1 cut(s)	71
BsiHKAI	GWGCWC	2 cut(s)	16, 183
BsiHKCI	CYCGRG	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	343
BslI	CCNNNNNNNGG	1 cut(s)	310
BsmAI	GTCTC	1 cut(s)	53
BsnI	GGCC	7 cut(s)	23, 164, 248, 287, 300, 342, 346
BsoBI	CYCGRG	1 cut(s)	9
Bsp120I	GGGCCC	1 cut(s)	285
Bsp1286I	GDGCHC	3 cut(s)	16, 183, 289
Bsp143I	GATC	2 cut(s)	82, 138
Bsp1720I	GCTNAGC	1 cut(s)	182
BspACI	CCGC	4 cut(s)	69, 188, 241, 338
BspANI	GGCC	7 cut(s)	23, 164, 248, 287, 300, 342, 346
BspCNI	CTCAG	1 cut(s)	195
BspFNI	CGCG	1 cut(s)	188
BspLI	GGNNCC	4 cut(s)	73, 113, 286, 287
BspMAI	CTGCAG	1 cut(s)	298
BspT107I	GGYRCC	1 cut(s)	71
BsrFI	RCCGGY	1 cut(s)	342
BsrI	ACTGG	1 cut(s)	207
BssAI	RCCGGY	1 cut(s)	342
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	2 cut(s)	82, 138
BssSI	CACGAG	1 cut(s)	15
BssT1I	CCWWGG	1 cut(s)	213
Bst2BI	CACGAG	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	305
BstC8I	GCNNGC	4 cut(s)	25, 298, 340, 344
BstDEI	CTNAG	2 cut(s)	127, 182
BstF5I	GGATG	1 cut(s)	211
BstFNI	CGCG	1 cut(s)	188
BstHHI	GCGC	1 cut(s)	188
BstKTI	GATC	2 cut(s)	85, 141
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	2 cut(s)	82, 138
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 161, 194, 215, 293
BstNI	CCWGG	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	303
BstSFI	CTRYAG	1 cut(s)	294
BstSLI	GKGCMC	1 cut(s)	289
BstUI	CGCG	1 cut(s)	188
BstV1I	GCAGC	2 cut(s)	205, 280
BstXI	CCANNNNNNTGG	1 cut(s)	97
BsuRI	GGCC	7 cut(s)	23, 164, 248, 287, 300, 342, 346
BtsCI	GGATG	1 cut(s)	211
Cac8I	GCNNGC	4 cut(s)	25, 298, 340, 344
CfoI	GCGC	1 cut(s)	188
Cfr10I	RCCGGY	1 cut(s)	342
Cfr13I	GGNCC	5 cut(s)	163, 247, 285, 286, 340
Csp6I	GTAC	1 cut(s)	32
CviAII	CATG	1 cut(s)	97
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	2 cut(s)	127, 182
DpnI	GATC	2 cut(s)	84, 140
DpnII	GATC	2 cut(s)	82, 138
EaeI	YGGCCR	1 cut(s)	344
Ecl136II	GAGCTC	2 cut(s)	14, 181
Eco130I	CCWWGG	1 cut(s)	213
Eco147I	AGGCCT	1 cut(s)	300
Eco24I	GRGCYC	3 cut(s)	16, 183, 289
Eco53kI	GAGCTC	2 cut(s)	14, 181
Eco57I	CTGAAG	1 cut(s)	276
Eco88I	CYCGRG	1 cut(s)	9
EcoICRI	GAGCTC	2 cut(s)	14, 181
EcoO109I	RGGNCCY	2 cut(s)	285, 286
EcoRII	CCWGG	1 cut(s)	303
EcoT14I	CCWWGG	1 cut(s)	213
EcoT38I	GRGCYC	3 cut(s)	16, 183, 289
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	1 cut(s)	100
FaiI	YATR	1 cut(s)	98
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FatI	CATG	1 cut(s)	96
FauI	CCCGC	1 cut(s)	331
Fnu4HI	GCNGC	4 cut(s)	70, 219, 241, 294
FokI	GGATG	1 cut(s)	218
FriOI	GRGCYC	3 cut(s)	16, 183, 289
FseI	GGCCGGCC	1 cut(s)	346
Fsp4HI	GCNGC	4 cut(s)	70, 219, 241, 294
FspBI	CTAG	1 cut(s)	48
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	4 cut(s)	70, 219, 241, 294
GsuI	CTGGAG	2 cut(s)	98, 287
HaeIII	GGCC	7 cut(s)	23, 164, 248, 287, 300, 342, 346
HapII	CCGG	1 cut(s)	343
HhaI	GCGC	1 cut(s)	188
Hin1II	CATG	1 cut(s)	100
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	2 cut(s)	61, 235
HpaII	CCGG	1 cut(s)	343
Hpy188I	TCNGA	3 cut(s)	54, 143, 226
Hpy188III	TCNNGA	1 cut(s)	115
HpyCH4V	TGCA	1 cut(s)	296
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 161, 194, 215, 293
HpyF3I	CTNAG	2 cut(s)	127, 182
Hsp92II	CATG	1 cut(s)	100
HspAI	GCGC	1 cut(s)	186
KroI	GCCGGC	1 cut(s)	342
KroNI	GCCGGC	1 cut(s)	344
Kzo9I	GATC	2 cut(s)	82, 138
LmnI	GCTCC	2 cut(s)	117, 214
LpnPI	CCDG	7 cut(s)	37, 128, 149, 188, 282, 290, 317
Lsp1109I	GCAGC	2 cut(s)	205, 280
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	48
MalI	GATC	2 cut(s)	84, 140
MboI	GATC	2 cut(s)	82, 138
MboII	GAAGA	2 cut(s)	239, 269
MhlI	GDGCHC	3 cut(s)	16, 183, 289
MluCI	AATT	2 cut(s)	230, 331
MlyI	GAGTC	2 cut(s)	55, 229
MnlI	CCTC	5 cut(s)	53, 184, 232, 304, 311
MroNI	GCCGGC	1 cut(s)	342
MseI	TTAA	1 cut(s)	330
MslI	CAYNNNNRTG	1 cut(s)	95
MspI	CCGG	1 cut(s)	343
MspR9I	CCNGG	1 cut(s)	305
MvaI	CCWGG	1 cut(s)	305
MvnI	CGCG	1 cut(s)	188
MwoI	GCNNNNNNNGC	5 cut(s)	20, 161, 194, 215, 293
NaeI	GCCGGC	1 cut(s)	344
NdeII	GATC	2 cut(s)	82, 138
NgoMIV	GCCGGC	1 cut(s)	342
NlaIII	CATG	1 cut(s)	100
NlaIV	GGNNCC	4 cut(s)	73, 113, 286, 287
PaeR7I	CTCGAG	1 cut(s)	9
PceI	AGGCCT	1 cut(s)	300
PdiI	GCCGGC	1 cut(s)	344
PkrI	GCNGC	4 cut(s)	71, 220, 242, 295
PleI	GAGTC	2 cut(s)	55, 229
PpsI	GAGTC	2 cut(s)	55, 229
Psp124BI	GAGCTC	2 cut(s)	16, 183
Psp6I	CCWGG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	303
PspN4I	GGNNCC	4 cut(s)	73, 113, 286, 287
PspOMI	GGGCCC	1 cut(s)	285
PspPI	GGNCC	5 cut(s)	163, 247, 285, 286, 340
PspXI	VCTCGAGB	1 cut(s)	9
PstI	CTGCAG	1 cut(s)	298
RigI	GGCCGGCC	1 cut(s)	346
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
RseI	CAYNNNNRTG	1 cut(s)	95
SacI	GAGCTC	2 cut(s)	16, 183
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	4 cut(s)	70, 219, 241, 294
Sau3AI	GATC	2 cut(s)	82, 138
Sau96I	GGNCC	5 cut(s)	163, 247, 285, 286, 340
SchI	GAGTC	2 cut(s)	55, 229
ScrFI	CCNGG	1 cut(s)	305
SduI	GDGCHC	3 cut(s)	16, 183, 289
SetI	ASST	9 cut(s)	16, 45, 77, 157, 183, 256, 309, 315, 330
SfaNI	GCATC	1 cut(s)	196
SfcI	CTRYAG	1 cut(s)	294
Sfr274I	CTCGAG	1 cut(s)	9
SlaI	CTCGAG	1 cut(s)	9
SmiMI	CAYNNNNRTG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	9
SmoI	CTYRAG	1 cut(s)	9
Sse9I	AATT	2 cut(s)	230, 331
SseBI	AGGCCT	1 cut(s)	300
SsiI	CCGC	4 cut(s)	69, 188, 241, 338
SspMI	CTAG	1 cut(s)	48
SstI	GAGCTC	2 cut(s)	16, 183
StuI	AGGCCT	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	303
StyI	CCWWGG	1 cut(s)	213
TaqI	TCGA	2 cut(s)	10, 85
TasI	AATT	2 cut(s)	230, 331
TauI	GCSGC	2 cut(s)	72, 243
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TseI	GCWGC	2 cut(s)	218, 293
TspGWI	ACGGA	1 cut(s)	49
XhoI	CTCGAG	1 cut(s)	9
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.