Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8197550.1

Orthogroup ID

OG0004550

Physical Location & Seq

Genomic Coordinates Forward (+)

359 .. 658

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8197550.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atggagactcttcgcggcaccttgaatgatcgggccactcgaatgggggagataaggctccagaagttggacttagaagcccatatccggcgtttccaagctcgtttggcctatgtgaacaacgagcttagtgcggaggaagcccaattggacgctcccttggctgcctcagaagaattgactcgctgcttggcccaagctgaagaacgagccttgttgattgaaaacggggcccttactgcaggcctccaggttgaggtgctttgtttgaagcttgattttgcgggccggccactttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

99

Amino Acids

11.02

Weight (kDa)

5.0

Isoelectric Point (pI)

44.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004550)

Species	Orthologous Gene IDs
malus_domestica	MD12G1127500.v1.1 MD12G1127800.v1.1
pyrus_communis	pycom15g22880
rosa_chinensis	RchiOBHm_Chr3g0490741 RchiOBHm_Chr3g0490781 RchiOBHm_Chr5g0036381 RchiOBHm_Chr7g0204711
rosa_multiflora	Rmu_co8157836.1_g000001 Rmu_co8197550.1_g000002 Rmu_co8285827.1_g000001 Rmu_sc0000962.1_g000051 Rmu_sc0001049.1_g000003 Rmu_sc0002263.1_g000051 Rmu_sc0002489.1_g000041 Rmu_sc0004142.1_g000006 Rmu_sc0005425.1_g000014 Rmu_sc0037878.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137800 Rroxscaffold_3G00248860 Rroxscaffold_5G00339360 Rroxscaffold_5G00378250 Rroxscaffold_6G00390190 Rroxscaffold_6G00393530 Rroxscaffold_7G00199500
rosa_samantha	Rh1BG194600 Rh3DG134500 Rh3DG149400 Rh3DG157200 Rh3DG157400 Rh4BG185400 Rh5CG399000
rosa_wichuraiana	Rw3G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	17
AccB7I	CCANNNNNTGG	1 cut(s)	67
AccII	CGCG	1 cut(s)	15
AciI	CCGC	3 cut(s)	15, 134, 284
AcoI	YGGCCR	1 cut(s)	290
AcuI	CTGAAG	1 cut(s)	222
AfiI	CCNNNNNNNGG	3 cut(s)	67, 87, 256
AgsI	TTSAA	3 cut(s)	25, 224, 271
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	4 cut(s)	101, 127, 200, 274
AluI	AGCT	4 cut(s)	101, 127, 200, 274
AoxI	GGCC	7 cut(s)	33, 108, 192, 231, 244, 286, 290
ApaI	GGGCCC	1 cut(s)	235
ApeKI	GCWGC	2 cut(s)	164, 186
AspS9I	GGNCC	5 cut(s)	33, 193, 231, 232, 286
BaeGI	GKGCMC	1 cut(s)	235
BanI	GGYRCC	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	235
BbvI	GCAGC	2 cut(s)	151, 173
BcgI	CGANNNNNNTGC	2 cut(s)	113, 147
BciT130I	CCWGG	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	240
BisI	GCNGC	3 cut(s)	16, 165, 187
BlsI	GCNGC	3 cut(s)	17, 166, 188
Bme1390I	CCNGG	1 cut(s)	251
BmgT120I	GGNCC	5 cut(s)	33, 193, 231, 232, 286
BmiI	GGNNCC	4 cut(s)	19, 59, 232, 233
BmrFI	CCNGG	1 cut(s)	251
BpmI	CTGGAG	2 cut(s)	44, 233
BsaJI	CCNNGG	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 87, 256
Bse118I	RCCGGY	1 cut(s)	288
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	1 cut(s)	159
BseLI	CCNNNNNNNGG	3 cut(s)	67, 87, 256
BseMII	CTCAG	1 cut(s)	183
BseSI	GKGCMC	1 cut(s)	235
BseXI	GCAGC	2 cut(s)	151, 173
Bsh1236I	CGCG	1 cut(s)	15
BshFI	GGCC	7 cut(s)	35, 110, 194, 233, 246, 288, 292
BshNI	GGYRCC	1 cut(s)	17
BsiSI	CCGG	2 cut(s)	88, 289
BslI	CCNNNNNNNGG	3 cut(s)	67, 87, 256
BsnI	GGCC	7 cut(s)	35, 110, 194, 233, 246, 288, 292
Bsp120I	GGGCCC	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp143I	GATC	1 cut(s)	28
BspACI	CCGC	3 cut(s)	15, 134, 284
BspANI	GGCC	7 cut(s)	35, 110, 194, 233, 246, 288, 292
BspCNI	CTCAG	1 cut(s)	182
BspFNI	CGCG	1 cut(s)	15
BspLI	GGNNCC	4 cut(s)	19, 59, 232, 233
BspMAI	CTGCAG	1 cut(s)	244
BspT107I	GGYRCC	1 cut(s)	17
BsrFI	RCCGGY	1 cut(s)	288
BssAI	RCCGGY	1 cut(s)	288
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	1 cut(s)	28
BssT1I	CCWWGG	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	251
Bst6I	CTCTTC	1 cut(s)	15
BstC8I	GCNNGC	3 cut(s)	244, 286, 290
BstDEI	CTNAG	3 cut(s)	73, 128, 169
BstFNI	CGCG	1 cut(s)	15
BstKTI	GATC	1 cut(s)	31
BstMBI	GATC	1 cut(s)	28
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 140, 161, 239
BstNI	CCWGG	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	249
BstSFI	CTRYAG	1 cut(s)	240
BstSLI	GKGCMC	1 cut(s)	235
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	2 cut(s)	151, 173
BstXI	CCANNNNNNTGG	1 cut(s)	43
BsuRI	GGCC	7 cut(s)	35, 110, 194, 233, 246, 288, 292
Cac8I	GCNNGC	3 cut(s)	244, 286, 290
Cfr10I	RCCGGY	1 cut(s)	288
Cfr13I	GGNCC	5 cut(s)	33, 193, 231, 232, 286
CseI	GACGC	1 cut(s)	161
DdeI	CTNAG	3 cut(s)	73, 128, 169
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
EaeI	YGGCCR	1 cut(s)	290
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	159
Eco147I	AGGCCT	1 cut(s)	246
Eco24I	GRGCYC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	222
EcoO109I	RGGNCCY	2 cut(s)	231, 232
EcoRII	CCWGG	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	159
EcoT38I	GRGCYC	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	159
FaiI	YATR	2 cut(s)	84, 114
FalI	AAGNNNNNCTT	2 cut(s)	56, 88
FauI	CCCGC	1 cut(s)	277
Fnu4HI	GCNGC	3 cut(s)	16, 165, 187
FriOI	GRGCYC	1 cut(s)	235
FseI	GGCCGGCC	1 cut(s)	292
Fsp4HI	GCNGC	3 cut(s)	16, 165, 187
GluI	GCNGC	3 cut(s)	16, 165, 187
GsuI	CTGGAG	2 cut(s)	44, 233
HaeIII	GGCC	7 cut(s)	35, 110, 194, 233, 246, 288, 292
HapII	CCGG	2 cut(s)	88, 289
HgaI	GACGC	1 cut(s)	161
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	2 cut(s)	7, 181
HpaII	CCGG	2 cut(s)	88, 289
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	1 cut(s)	61
Hpy8I	GTNNAC	1 cut(s)	118
HpyCH4V	TGCA	1 cut(s)	242
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 140, 161, 239
HpyF3I	CTNAG	3 cut(s)	73, 128, 169
KroI	GCCGGC	1 cut(s)	288
KroNI	GCCGGC	1 cut(s)	290
Kzo9I	GATC	1 cut(s)	28
LmnI	GCTCC	2 cut(s)	63, 160
LpnPI	CCDG	5 cut(s)	74, 101, 228, 236, 263
Lsp1109I	GCAGC	2 cut(s)	151, 173
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MboII	GAAGA	2 cut(s)	185, 215
MfeI	CAATTG	1 cut(s)	146
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	2 cut(s)	146, 176
MlyI	GAGTC	1 cut(s)	175
MmeI	TCCRAC	1 cut(s)	48
MnlI	CCTC	4 cut(s)	130, 178, 250, 257
MroNI	GCCGGC	1 cut(s)	288
MslI	CAYNNNNRTG	1 cut(s)	41
MspI	CCGG	2 cut(s)	88, 289
MspR9I	CCNGG	1 cut(s)	251
MunI	CAATTG	1 cut(s)	146
MvaI	CCWGG	1 cut(s)	251
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	4 cut(s)	107, 140, 161, 239
NaeI	GCCGGC	1 cut(s)	290
NdeII	GATC	1 cut(s)	28
NgoMIV	GCCGGC	1 cut(s)	288
NlaIV	GGNNCC	4 cut(s)	19, 59, 232, 233
PceI	AGGCCT	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	1 cut(s)	37
PdiI	GCCGGC	1 cut(s)	290
PflMI	CCANNNNNTGG	1 cut(s)	67
PkrI	GCNGC	3 cut(s)	17, 166, 188
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	4 cut(s)	19, 59, 232, 233
PspOMI	GGGCCC	1 cut(s)	231
PspPI	GGNCC	5 cut(s)	33, 193, 231, 232, 286
PstI	CTGCAG	1 cut(s)	244
RigI	GGCCGGCC	1 cut(s)	292
RseI	CAYNNNNRTG	1 cut(s)	41
SatI	GCNGC	3 cut(s)	16, 165, 187
Sau3AI	GATC	1 cut(s)	28
Sau96I	GGNCC	5 cut(s)	33, 193, 231, 232, 286
SchI	GAGTC	1 cut(s)	175
ScrFI	CCNGG	1 cut(s)	251
SduI	GDGCHC	1 cut(s)	235
SetI	ASST	7 cut(s)	23, 103, 129, 202, 255, 261, 276
SfcI	CTRYAG	1 cut(s)	240
SmiMI	CAYNNNNRTG	1 cut(s)	41
Sse9I	AATT	2 cut(s)	146, 176
SseBI	AGGCCT	1 cut(s)	246
SsiI	CCGC	3 cut(s)	15, 134, 284
StuI	AGGCCT	1 cut(s)	246
StyD4I	CCNGG	1 cut(s)	249
StyI	CCWWGG	1 cut(s)	159
TaqI	TCGA	1 cut(s)	40
TasI	AATT	2 cut(s)	146, 176
TauI	GCSGC	1 cut(s)	18
TseI	GCWGC	2 cut(s)	164, 186
Van91I	CCANNNNNTGG	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.