Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8285827.1

Orthogroup ID

OG0004550

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 859

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8285827.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

tggccggcgggacgtacatcccaggtttgggggatgaggcgagcagtggtggtctcttgatttcagaaatagacgaggcgagcgttgaggccgaaggttctgctctcggagctgcttgtttccaacactctactgataaacctcgcattgaattttcagagtctcccgcggctgagatgtcgaaccaagcccagggggtcgttgagggaaattatgctgaagatgaaagaattgaggaaccaatcgaccttctaacattggtgacttatgatcgtgctgtgaatcatccgccttctcctcccactaggcttgaaaagctagctttaatccttgaggaaactcctcctaccgccgctgaactagcgaggacagagcttcaaaaccttttaggacagtggcggctggggcctgaagaactctccaggatctgggaagccattgtgttcccttgtcgagagcatgcggtcaatctaactcagctcgacacaatagaaaagctgttgaaagaccttgaagtggcccgcgctcgccaatctacagtggaggctcgagctccagcggcccgcgtggtacggaataacctcgctagtcagatggagactcttcgcggcaccttgaatgatcgagccactcgcatggggaagataaggctccagaatacggaggaagcccaactagacgctcccttggctgcctctgaagaattgactcaccgcttggcccaagctgaagaacgagccttgttgattgaaaacggggcccttgctgcaggcctccaggttgaggttcttt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

263

Amino Acids

28.57

Weight (kDa)

4.61

Isoelectric Point (pI)

48.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004550)

Species	Orthologous Gene IDs
malus_domestica	MD12G1127500.v1.1 MD12G1127800.v1.1
pyrus_communis	pycom15g22880
rosa_chinensis	RchiOBHm_Chr3g0490741 RchiOBHm_Chr3g0490781 RchiOBHm_Chr5g0036381 RchiOBHm_Chr7g0204711
rosa_multiflora	Rmu_co8157836.1_g000001 Rmu_co8197550.1_g000002 Rmu_co8285827.1_g000001 Rmu_sc0000962.1_g000051 Rmu_sc0001049.1_g000003 Rmu_sc0002263.1_g000051 Rmu_sc0002489.1_g000041 Rmu_sc0004142.1_g000006 Rmu_sc0005425.1_g000014 Rmu_sc0037878.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137800 Rroxscaffold_3G00248860 Rroxscaffold_5G00339360 Rroxscaffold_5G00378250 Rroxscaffold_6G00390190 Rroxscaffold_6G00393530 Rroxscaffold_7G00199500
rosa_samantha	Rh1BG194600 Rh3DG134500 Rh3DG149400 Rh3DG157200 Rh3DG157400 Rh4BG185400 Rh5CG399000
rosa_wichuraiana	Rw3G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	610
AccB7I	CCANNNNNTGG	1 cut(s)	428
AccII	CGCG	4 cut(s)	169, 524, 566, 608
AclWI	GGATC	1 cut(s)	433
AcoI	YGGCCR	1 cut(s)	2
AcsI	RAATTY	1 cut(s)	151
AcuI	CTGAAG	4 cut(s)	239, 431, 719, 749
AfaI	GTAC	2 cut(s)	16, 572
AfiI	CCNNNNNNNGG	7 cut(s)	27, 28, 192, 428, 516, 660, 783
AgsI	TTSAA	7 cut(s)	151, 313, 379, 504, 514, 618, 751
AjnI	CCWGG	4 cut(s)	21, 191, 421, 776
AluBI	AGCT	8 cut(s)	112, 318, 322, 375, 480, 498, 553, 727
AluI	AGCT	8 cut(s)	112, 318, 322, 375, 480, 498, 553, 727
Alw21I	GWGCWC	1 cut(s)	555
Alw26I	GTCTC	3 cut(s)	58, 167, 592
AlwI	GGATC	1 cut(s)	433
AlwNI	CAGNNNCTG	1 cut(s)	428
Ama87I	CYCGRG	1 cut(s)	548
AoxI	GGCC	8 cut(s)	2, 89, 406, 518, 560, 719, 758, 771
ApaI	GGGCCC	1 cut(s)	762
ApeKI	GCWGC	3 cut(s)	112, 691, 766
ApoI	RAATTY	1 cut(s)	151
AspLEI	GCGC	1 cut(s)	526
AspS9I	GGNCC	6 cut(s)	406, 519, 561, 720, 758, 759
AsuHPI	GGTGA	2 cut(s)	273, 703
AsuNHI	GCTAGC	1 cut(s)	318
AvaI	CYCGRG	1 cut(s)	548
BaeGI	GKGCMC	1 cut(s)	762
BanI	GGYRCC	1 cut(s)	610
BanII	GRGCYC	2 cut(s)	555, 762
Bbv12I	GWGCWC	1 cut(s)	555
BbvI	GCAGC	3 cut(s)	99, 678, 753
BccI	CCATC	1 cut(s)	588
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BciT130I	CCWGG	4 cut(s)	23, 193, 423, 778
BcoDI	GTCTC	3 cut(s)	58, 167, 592
BfaI	CTAG	5 cut(s)	305, 319, 361, 587, 676
BfmI	CTRYAG	2 cut(s)	536, 767
BisI	GCNGC	8 cut(s)	113, 170, 353, 400, 560, 609, 692, 767
BlsI	GCNGC	8 cut(s)	114, 171, 354, 401, 561, 610, 693, 768
Bme1390I	CCNGG	4 cut(s)	23, 193, 423, 778
BmeT110I	CYCGRG	1 cut(s)	548
BmgT120I	GGNCC	6 cut(s)	406, 519, 561, 720, 758, 759
BmiI	GGNNCC	6 cut(s)	239, 407, 612, 652, 759, 760
BmrFI	CCNGG	4 cut(s)	23, 193, 423, 778
BmtI	GCTAGC	1 cut(s)	322
BpmI	CTGGAG	4 cut(s)	405, 539, 637, 760
BpuEI	CTTGAG	1 cut(s)	352
BsaI	GGTCTC	1 cut(s)	58
BsaJI	CCNNGG	5 cut(s)	21, 167, 191, 192, 686
Bsc4I	CCNNNNNNNGG	7 cut(s)	27, 28, 192, 428, 516, 660, 783
Bse118I	RCCGGY	1 cut(s)	4
BseBI	CCWGG	4 cut(s)	23, 193, 423, 778
BseDI	CCNNGG	5 cut(s)	21, 167, 191, 192, 686
BseGI	GGATG	3 cut(s)	17, 39, 285
BseLI	CCNNNNNNNGG	7 cut(s)	27, 28, 192, 428, 516, 660, 783
BseMII	CTCAG	2 cut(s)	164, 490
BseRI	GAGGAG	2 cut(s)	287, 332
BseSI	GKGCMC	1 cut(s)	762
BseXI	GCAGC	3 cut(s)	99, 678, 753
BseYI	CCCAGC	1 cut(s)	402
Bsh1236I	CGCG	4 cut(s)	169, 524, 566, 608
BshFI	GGCC	8 cut(s)	4, 91, 408, 520, 562, 721, 760, 773
BshNI	GGYRCC	1 cut(s)	610
BsiHKAI	GWGCWC	1 cut(s)	555
BsiHKCI	CYCGRG	1 cut(s)	548
BsiSI	CCGG	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	7 cut(s)	27, 28, 192, 428, 516, 660, 783
BsmAI	GTCTC	3 cut(s)	58, 167, 592
BsmFI	GGGAC	1 cut(s)	24
BsnI	GGCC	8 cut(s)	4, 91, 408, 520, 562, 721, 760, 773
Bso31I	GGTCTC	1 cut(s)	58
BsoBI	CYCGRG	1 cut(s)	548
Bsp120I	GGGCCC	1 cut(s)	758
Bsp1286I	GDGCHC	2 cut(s)	555, 762
Bsp143I	GATC	3 cut(s)	270, 425, 621
BspANI	GGCC	8 cut(s)	4, 91, 408, 520, 562, 721, 760, 773
BspCNI	CTCAG	2 cut(s)	165, 489
BspFNI	CGCG	4 cut(s)	169, 524, 566, 608
BspLI	GGNNCC	6 cut(s)	239, 407, 612, 652, 759, 760
BspMAI	CTGCAG	1 cut(s)	771
BspOI	GCTAGC	1 cut(s)	322
BspPI	GGATC	1 cut(s)	433
BspT107I	GGYRCC	1 cut(s)	610
BspTNI	GGTCTC	1 cut(s)	58
BsrFI	RCCGGY	1 cut(s)	4
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	5 cut(s)	21, 167, 191, 192, 686
BssMI	GATC	3 cut(s)	270, 425, 621
BssT1I	CCWWGG	1 cut(s)	686
Bst2UI	CCWGG	4 cut(s)	23, 193, 423, 778
Bst4CI	ACNGT	2 cut(s)	395, 540
Bst6I	CTCTTC	1 cut(s)	608
BstC8I	GCNNGC	9 cut(s)	6, 42, 81, 320, 461, 522, 528, 564, 771
BstDEI	CTNAG	2 cut(s)	173, 476
BstDSI	CCRYGG	1 cut(s)	167
BstF5I	GGATG	3 cut(s)	17, 39, 285
BstFNI	CGCG	4 cut(s)	169, 524, 566, 608
BstHHI	GCGC	1 cut(s)	526
BstKTI	GATC	3 cut(s)	273, 428, 624
BstMAI	GTCTC	3 cut(s)	58, 167, 592
BstMBI	GATC	3 cut(s)	270, 425, 621
BstMWI	GCNNNNNNNGC	7 cut(s)	109, 315, 361, 405, 559, 688, 766
BstNI	CCWGG	4 cut(s)	23, 193, 423, 778
BstNSI	RCATGY	1 cut(s)	463
BstSCI	CCNGG	4 cut(s)	21, 191, 421, 776
BstSFI	CTRYAG	2 cut(s)	536, 767
BstSLI	GKGCMC	1 cut(s)	762
BstUI	CGCG	4 cut(s)	169, 524, 566, 608
BstV1I	GCAGC	3 cut(s)	99, 678, 753
BstX2I	RGATCY	1 cut(s)	425
BstXI	CCANNNNNNTGG	1 cut(s)	636
BstYI	RGATCY	1 cut(s)	425
BsuRI	GGCC	8 cut(s)	4, 91, 408, 520, 562, 721, 760, 773
BtgI	CCRYGG	1 cut(s)	167
BtsCI	GGATG	3 cut(s)	17, 39, 285
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	3 cut(s)	51, 400, 545
Cac8I	GCNNGC	9 cut(s)	6, 42, 81, 320, 461, 522, 528, 564, 771
CaiI	CAGNNNCTG	1 cut(s)	428
CfoI	GCGC	1 cut(s)	526
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	6 cut(s)	406, 519, 561, 720, 758, 759
Cfr42I	CCGCGG	1 cut(s)	170
CseI	GACGC	1 cut(s)	688
Csp6I	GTAC	2 cut(s)	15, 571
CspCI	CAANNNNNGTGG	2 cut(s)	291, 326
CviAII	CATG	2 cut(s)	460, 636
CviQI	GTAC	2 cut(s)	15, 571
DdeI	CTNAG	2 cut(s)	173, 476
DpnI	GATC	3 cut(s)	272, 427, 623
DpnII	GATC	3 cut(s)	270, 425, 621
EaeI	YGGCCR	1 cut(s)	2
Eam1104I	CTCTTC	1 cut(s)	608
EarI	CTCTTC	1 cut(s)	608
EciI	GGCGGA	1 cut(s)	278
Ecl136II	GAGCTC	1 cut(s)	553
Eco130I	CCWWGG	1 cut(s)	686
Eco147I	AGGCCT	1 cut(s)	773
Eco24I	GRGCYC	2 cut(s)	555, 762
Eco31I	GGTCTC	1 cut(s)	58
Eco53kI	GAGCTC	1 cut(s)	553
Eco57I	CTGAAG	4 cut(s)	239, 431, 719, 749
Eco88I	CYCGRG	1 cut(s)	548
EcoICRI	GAGCTC	1 cut(s)	553
EcoO109I	RGGNCCY	3 cut(s)	406, 758, 759
EcoRII	CCWGG	4 cut(s)	21, 191, 421, 776
EcoT14I	CCWWGG	1 cut(s)	686
EcoT38I	GRGCYC	2 cut(s)	555, 762
ErhI	CCWWGG	1 cut(s)	686
FaeI	CATG	2 cut(s)	463, 639
FaiI	YATR	4 cut(s)	215, 269, 461, 637
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	2 cut(s)	459, 635
FauI	CCCGC	3 cut(s)	174, 529, 571
Fnu4HI	GCNGC	8 cut(s)	113, 170, 353, 400, 560, 609, 692, 767
FokI	GGATG	3 cut(s)	4, 46, 272
FriOI	GRGCYC	2 cut(s)	555, 762
Fsp4HI	GCNGC	8 cut(s)	113, 170, 353, 400, 560, 609, 692, 767
FspBI	CTAG	5 cut(s)	305, 319, 361, 587, 676
GlaI	GCGC	1 cut(s)	525
GluI	GCNGC	8 cut(s)	113, 170, 353, 400, 560, 609, 692, 767
GsaI	CCCAGC	1 cut(s)	406
GsuI	CTGGAG	4 cut(s)	405, 539, 637, 760
HaeIII	GGCC	8 cut(s)	4, 91, 408, 520, 562, 721, 760, 773
HapII	CCGG	1 cut(s)	5
HgaI	GACGC	1 cut(s)	688
HhaI	GCGC	1 cut(s)	526
Hin1II	CATG	2 cut(s)	463, 639
Hin6I	GCGC	1 cut(s)	524
HinP1I	GCGC	1 cut(s)	524
HinfI	GANTC	4 cut(s)	160, 282, 600, 708
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	2 cut(s)	273, 703
Hpy188I	TCNGA	5 cut(s)	66, 109, 159, 593, 699
Hpy188III	TCNNGA	3 cut(s)	57, 454, 654
HpyAV	CCTTC	3 cut(s)	88, 259, 302
HpyCH4III	ACNGT	2 cut(s)	395, 540
HpyCH4IV	ACGT	1 cut(s)	13
HpyCH4V	TGCA	1 cut(s)	769
HpyF10VI	GCNNNNNNNGC	7 cut(s)	109, 315, 361, 405, 559, 688, 766
HpyF3I	CTNAG	2 cut(s)	173, 476
HpySE526I	ACGT	1 cut(s)	13
Hsp92II	CATG	2 cut(s)	463, 639
HspAI	GCGC	1 cut(s)	524
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
KspI	CCGCGG	1 cut(s)	170
Kzo9I	GATC	3 cut(s)	270, 425, 621
LmnI	GCTCC	4 cut(s)	109, 558, 656, 687
Lsp1109I	GCAGC	3 cut(s)	99, 678, 753
MaeI	CTAG	5 cut(s)	305, 319, 361, 587, 676
MaeII	ACGT	1 cut(s)	13
MaeIII	GTNAC	1 cut(s)	261
MalI	GATC	3 cut(s)	272, 427, 623
MboI	GATC	3 cut(s)	270, 425, 621
MboII	GAAGA	6 cut(s)	232, 424, 595, 654, 712, 742
MflI	RGATCY	1 cut(s)	425
MhlI	GDGCHC	2 cut(s)	555, 762
MluCI	AATT	4 cut(s)	151, 210, 230, 703
MlyI	GAGTC	3 cut(s)	169, 594, 702
MmeI	TCCRAC	1 cut(s)	147
MroNI	GCCGGC	1 cut(s)	4
MseI	TTAA	1 cut(s)	325
MslI	CAYNNNNRTG	1 cut(s)	634
MspA1I	CMGCKG	3 cut(s)	169, 355, 559
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	4 cut(s)	23, 193, 423, 778
MvaI	CCWGG	4 cut(s)	23, 193, 423, 778
MvnI	CGCG	4 cut(s)	169, 524, 566, 608
MwoI	GCNNNNNNNGC	7 cut(s)	109, 315, 361, 405, 559, 688, 766
NaeI	GCCGGC	1 cut(s)	6
NdeII	GATC	3 cut(s)	270, 425, 621
NgoMIV	GCCGGC	1 cut(s)	4
NheI	GCTAGC	1 cut(s)	318
NlaIII	CATG	2 cut(s)	463, 639
NlaIV	GGNNCC	6 cut(s)	239, 407, 612, 652, 759, 760
NmuCI	GTSAC	1 cut(s)	261
NspI	RCATGY	1 cut(s)	463
PaeI	GCATGC	1 cut(s)	463
PaeR7I	CTCGAG	1 cut(s)	548
PasI	CCCWGGG	1 cut(s)	192
PceI	AGGCCT	1 cut(s)	773
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PdiI	GCCGGC	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	282
PflMI	CCANNNNNTGG	1 cut(s)	428
PfoI	TCCNGGA	1 cut(s)	421
PkrI	GCNGC	8 cut(s)	114, 171, 354, 401, 561, 610, 693, 768
PleI	GAGTC	3 cut(s)	168, 594, 702
PpsI	GAGTC	3 cut(s)	168, 594, 702
Psp124BI	GAGCTC	1 cut(s)	555
Psp6I	CCWGG	4 cut(s)	21, 191, 421, 776
PspFI	CCCAGC	1 cut(s)	402
PspGI	CCWGG	4 cut(s)	21, 191, 421, 776
PspN4I	GGNNCC	6 cut(s)	239, 407, 612, 652, 759, 760
PspOMI	GGGCCC	1 cut(s)	758
PspPI	GGNCC	6 cut(s)	406, 519, 561, 720, 758, 759
PspXI	VCTCGAGB	1 cut(s)	548
PstI	CTGCAG	1 cut(s)	771
PstNI	CAGNNNCTG	1 cut(s)	428
PsuI	RGATCY	1 cut(s)	425
RsaI	GTAC	2 cut(s)	16, 572
RsaNI	GTAC	2 cut(s)	15, 571
RseI	CAYNNNNRTG	1 cut(s)	634
SacI	GAGCTC	1 cut(s)	555
SacII	CCGCGG	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	325
SatI	GCNGC	8 cut(s)	113, 170, 353, 400, 560, 609, 692, 767
Sau3AI	GATC	3 cut(s)	270, 425, 621
Sau96I	GGNCC	6 cut(s)	406, 519, 561, 720, 758, 759
SchI	GAGTC	3 cut(s)	169, 594, 702
ScrFI	CCNGG	4 cut(s)	23, 193, 423, 778
SduI	GDGCHC	2 cut(s)	555, 762
SfcI	CTRYAG	2 cut(s)	536, 767
Sfr274I	CTCGAG	1 cut(s)	548
Sfr303I	CCGCGG	1 cut(s)	170
SgrBI	CCGCGG	1 cut(s)	170
SlaI	CTCGAG	1 cut(s)	548
SmiMI	CAYNNNNRTG	1 cut(s)	634
SmlI	CTYRAG	2 cut(s)	331, 548
SmoI	CTYRAG	2 cut(s)	331, 548
SphI	GCATGC	1 cut(s)	463
Sse9I	AATT	4 cut(s)	151, 210, 230, 703
SseBI	AGGCCT	1 cut(s)	773
SspMI	CTAG	5 cut(s)	305, 319, 361, 587, 676
SstI	GAGCTC	1 cut(s)	555
StuI	AGGCCT	1 cut(s)	773
StyD4I	CCNGG	4 cut(s)	21, 191, 421, 776
StyI	CCWWGG	1 cut(s)	686
TaaI	ACNGT	2 cut(s)	395, 540
TaiI	ACGT	1 cut(s)	16
TaqI	TCGA	6 cut(s)	181, 245, 453, 482, 549, 624
TasI	AATT	4 cut(s)	151, 210, 230, 703
TauI	GCSGC	5 cut(s)	172, 355, 402, 562, 611
TfiI	GAWTC	1 cut(s)	282
Tru1I	TTAA	1 cut(s)	325
Tru9I	TTAA	1 cut(s)	325
TscAI	CASTG	3 cut(s)	51, 400, 545
TseFI	GTSAC	1 cut(s)	261
TseI	GCWGC	3 cut(s)	112, 691, 766
Tsp45I	GTSAC	1 cut(s)	261
TspDTI	ATGAA	1 cut(s)	239
TspGWI	ACGGA	2 cut(s)	588, 676
TspRI	CASTG	3 cut(s)	51, 400, 545
Van91I	CCANNNNNTGG	1 cut(s)	428
XapI	RAATTY	1 cut(s)	151
XceI	RCATGY	1 cut(s)	463
XhoI	CTCGAG	1 cut(s)	548
XspI	CTAG	5 cut(s)	305, 319, 361, 587, 676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.