Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037878.1

Orthogroup ID

OG0004550

Physical Location & Seq

Genomic Coordinates Reverse (-)

565 .. 1017

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037878.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atgttccttcgtcgagagcacgcggtcaatccaactcagcttgacactatagaaaagctgttgaaagaccttgacgtggcccgcgctcaccaatctgctgtggaggctcaaactggtgctgcccgtgtggtacggaataacctcgctagtcagatggagactcttagcggtaccttgaataatcgggccactcacatgggggagataaggctccagaagttagacttagaagcccagatccgacatctccaagctcgtttggcccatgtgaacaacgagctcagtatggaggaaccccaactagaagcacccttggctgcctccgaagaattgacttgccgcttggcccaagctgaagaacgtgccttgttgattgaaaacggggcccttgctgcaggcttccaggttgaggtgctttgtgtgaagcttgattttgcgggccggccactttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

16.6

Weight (kDa)

5.54

Isoelectric Point (pI)

34.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004550)

Species	Orthologous Gene IDs
malus_domestica	MD12G1127500.v1.1 MD12G1127800.v1.1
pyrus_communis	pycom15g22880
rosa_chinensis	RchiOBHm_Chr3g0490741 RchiOBHm_Chr3g0490781 RchiOBHm_Chr5g0036381 RchiOBHm_Chr7g0204711
rosa_multiflora	Rmu_co8157836.1_g000001 Rmu_co8197550.1_g000002 Rmu_co8285827.1_g000001 Rmu_sc0000962.1_g000051 Rmu_sc0001049.1_g000003 Rmu_sc0002263.1_g000051 Rmu_sc0002489.1_g000041 Rmu_sc0004142.1_g000006 Rmu_sc0005425.1_g000014 Rmu_sc0037878.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137800 Rroxscaffold_3G00248860 Rroxscaffold_5G00339360 Rroxscaffold_5G00378250 Rroxscaffold_6G00390190 Rroxscaffold_6G00393530 Rroxscaffold_7G00199500
rosa_samantha	Rh1BG194600 Rh3DG134500 Rh3DG149400 Rh3DG157200 Rh3DG157400 Rh4BG185400 Rh5CG399000
rosa_wichuraiana	Rw3G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	170
AccB1I	GGYRCC	1 cut(s)	170
AccII	CGCG	2 cut(s)	23, 84
AciI	CCGC	5 cut(s)	23, 82, 168, 340, 437
AclWI	GGATC	1 cut(s)	232
AcoI	YGGCCR	1 cut(s)	443
AcuI	CTGAAG	1 cut(s)	375
AfaI	GTAC	2 cut(s)	132, 172
AfiI	CCNNNNNNNGG	2 cut(s)	76, 409
AgsI	TTSAA	3 cut(s)	64, 178, 377
AjiI	CACGTC	1 cut(s)	76
AjnI	CCWGG	1 cut(s)	402
AluBI	AGCT	6 cut(s)	40, 58, 254, 280, 353, 427
AluI	AGCT	6 cut(s)	40, 58, 254, 280, 353, 427
Alw21I	GWGCWC	2 cut(s)	21, 282
Alw26I	GTCTC	1 cut(s)	152
AlwI	GGATC	1 cut(s)	232
AoxI	GGCC	7 cut(s)	78, 186, 261, 345, 384, 439, 443
ApaI	GGGCCC	1 cut(s)	388
ApeKI	GCWGC	3 cut(s)	119, 317, 392
Asp718I	GGTACC	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	7 cut(s)	79, 186, 262, 346, 384, 385, 439
AsuHPI	GGTGA	1 cut(s)	80
BaeGI	GKGCMC	1 cut(s)	388
BanI	GGYRCC	1 cut(s)	170
BanII	GRGCYC	2 cut(s)	282, 388
Bbv12I	GWGCWC	2 cut(s)	21, 282
BbvI	GCAGC	3 cut(s)	106, 304, 379
BccI	CCATC	1 cut(s)	148
BciT130I	CCWGG	1 cut(s)	404
BcoDI	GTCTC	1 cut(s)	152
BfaI	CTAG	2 cut(s)	147, 302
BfmI	CTRYAG	2 cut(s)	48, 393
BisI	GCNGC	4 cut(s)	120, 318, 340, 393
BlsI	GCNGC	4 cut(s)	121, 319, 341, 394
Bme1390I	CCNGG	1 cut(s)	404
BmgBI	CACGTC	1 cut(s)	76
BmgT120I	GGNCC	7 cut(s)	79, 186, 262, 346, 384, 385, 439
BmiI	GGNNCC	5 cut(s)	172, 212, 294, 385, 386
BmrFI	CCNGG	1 cut(s)	404
BpmI	CTGGAG	1 cut(s)	197
BsaJI	CCNNGG	1 cut(s)	312
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 409
Bse118I	RCCGGY	1 cut(s)	441
Bse1I	ACTGG	1 cut(s)	118
BseBI	CCWGG	1 cut(s)	404
BseDI	CCNNGG	1 cut(s)	312
BseLI	CCNNNNNNNGG	2 cut(s)	76, 409
BseMII	CTCAG	2 cut(s)	50, 295
BseNI	ACTGG	1 cut(s)	118
BseSI	GKGCMC	1 cut(s)	388
BseXI	GCAGC	3 cut(s)	106, 304, 379
Bsh1236I	CGCG	2 cut(s)	23, 84
BshFI	GGCC	7 cut(s)	80, 188, 263, 347, 386, 441, 445
BshNI	GGYRCC	1 cut(s)	170
BsiHKAI	GWGCWC	2 cut(s)	21, 282
BsiSI	CCGG	1 cut(s)	442
BslI	CCNNNNNNNGG	2 cut(s)	76, 409
BsmAI	GTCTC	1 cut(s)	152
BsnI	GGCC	7 cut(s)	80, 188, 263, 347, 386, 441, 445
Bsp120I	GGGCCC	1 cut(s)	384
Bsp1286I	GDGCHC	3 cut(s)	21, 282, 388
Bsp143I	GATC	1 cut(s)	237
BspACI	CCGC	5 cut(s)	23, 82, 168, 340, 437
BspANI	GGCC	7 cut(s)	80, 188, 263, 347, 386, 441, 445
BspCNI	CTCAG	2 cut(s)	49, 294
BspFNI	CGCG	2 cut(s)	23, 84
BspLI	GGNNCC	5 cut(s)	172, 212, 294, 385, 386
BspMAI	CTGCAG	1 cut(s)	397
BspPI	GGATC	1 cut(s)	232
BspT107I	GGYRCC	1 cut(s)	170
BsrFI	RCCGGY	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	118
BssAI	RCCGGY	1 cut(s)	441
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	1 cut(s)	237
BssT1I	CCWWGG	1 cut(s)	312
Bst2UI	CCWGG	1 cut(s)	404
BstC8I	GCNNGC	5 cut(s)	21, 82, 397, 439, 443
BstDEI	CTNAG	4 cut(s)	36, 164, 226, 281
BstFNI	CGCG	2 cut(s)	23, 84
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	1 cut(s)	240
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	1 cut(s)	237
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 260, 314, 392
BstNI	CCWGG	1 cut(s)	404
BstSCI	CCNGG	1 cut(s)	402
BstSFI	CTRYAG	2 cut(s)	48, 393
BstSLI	GKGCMC	1 cut(s)	388
BstUI	CGCG	2 cut(s)	23, 84
BstV1I	GCAGC	3 cut(s)	106, 304, 379
BstX2I	RGATCY	1 cut(s)	237
BstXI	CCANNNNNNTGG	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	237
BsuRI	GGCC	7 cut(s)	80, 188, 263, 347, 386, 441, 445
BtrI	CACGTC	1 cut(s)	76
Cac8I	GCNNGC	5 cut(s)	21, 82, 397, 439, 443
CfoI	GCGC	1 cut(s)	86
Cfr10I	RCCGGY	1 cut(s)	441
Cfr13I	GGNCC	7 cut(s)	79, 186, 262, 346, 384, 385, 439
Csp6I	GTAC	2 cut(s)	131, 171
CviAII	CATG	2 cut(s)	196, 266
CviQI	GTAC	2 cut(s)	131, 171
DdeI	CTNAG	4 cut(s)	36, 164, 226, 281
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
EaeI	YGGCCR	1 cut(s)	443
Ecl136II	GAGCTC	1 cut(s)	280
Eco130I	CCWWGG	1 cut(s)	312
Eco24I	GRGCYC	2 cut(s)	282, 388
Eco53kI	GAGCTC	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	375
EcoICRI	GAGCTC	1 cut(s)	280
EcoO109I	RGGNCCY	2 cut(s)	384, 385
EcoRII	CCWGG	1 cut(s)	402
EcoT14I	CCWWGG	1 cut(s)	312
EcoT38I	GRGCYC	2 cut(s)	282, 388
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	2 cut(s)	199, 269
FaiI	YATR	4 cut(s)	50, 197, 267, 287
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FatI	CATG	2 cut(s)	195, 265
FauI	CCCGC	2 cut(s)	89, 430
Fnu4HI	GCNGC	4 cut(s)	120, 318, 340, 393
FriOI	GRGCYC	2 cut(s)	282, 388
FseI	GGCCGGCC	1 cut(s)	445
Fsp4HI	GCNGC	4 cut(s)	120, 318, 340, 393
FspBI	CTAG	2 cut(s)	147, 302
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	4 cut(s)	120, 318, 340, 393
GsuI	CTGGAG	1 cut(s)	197
HaeIII	GGCC	7 cut(s)	80, 188, 263, 347, 386, 441, 445
HapII	CCGG	1 cut(s)	442
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	2 cut(s)	199, 269
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HindIII	AAGCTT	1 cut(s)	425
HinfI	GANTC	1 cut(s)	160
HpaII	CCGG	1 cut(s)	442
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	3 cut(s)	153, 242, 325
Hpy188III	TCNNGA	2 cut(s)	14, 214
Hpy8I	GTNNAC	1 cut(s)	271
Hpy99I	CGWCG	1 cut(s)	15
HpyAV	CCTTC	1 cut(s)	17
HpyCH4IV	ACGT	2 cut(s)	75, 361
HpyCH4V	TGCA	1 cut(s)	395
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 260, 314, 392
HpyF3I	CTNAG	4 cut(s)	36, 164, 226, 281
HpySE526I	ACGT	2 cut(s)	75, 361
Hsp92II	CATG	2 cut(s)	199, 269
HspAI	GCGC	1 cut(s)	84
KpnI	GGTACC	1 cut(s)	174
KroI	GCCGGC	1 cut(s)	441
KroNI	GCCGGC	1 cut(s)	443
Kzo9I	GATC	1 cut(s)	237
LmnI	GCTCC	1 cut(s)	216
LpnPI	CCDG	6 cut(s)	99, 227, 248, 381, 389, 416
Lsp1109I	GCAGC	3 cut(s)	106, 304, 379
MaeI	CTAG	2 cut(s)	147, 302
MaeII	ACGT	2 cut(s)	75, 361
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MboII	GAAGA	2 cut(s)	338, 368
MflI	RGATCY	1 cut(s)	237
MhlI	GDGCHC	3 cut(s)	21, 282, 388
MluCI	AATT	1 cut(s)	329
MlyI	GAGTC	1 cut(s)	154
MmeI	TCCRAC	2 cut(s)	56, 265
MnlI	CCTC	5 cut(s)	97, 152, 283, 331, 403
MroNI	GCCGGC	1 cut(s)	441
MslI	CAYNNNNRTG	1 cut(s)	194
MspI	CCGG	1 cut(s)	442
MspR9I	CCNGG	1 cut(s)	404
MvaI	CCWGG	1 cut(s)	404
MvnI	CGCG	2 cut(s)	23, 84
MwoI	GCNNNNNNNGC	4 cut(s)	104, 260, 314, 392
NaeI	GCCGGC	1 cut(s)	443
NdeII	GATC	1 cut(s)	237
NgoMIV	GCCGGC	1 cut(s)	441
NlaIII	CATG	2 cut(s)	199, 269
NlaIV	GGNNCC	5 cut(s)	172, 212, 294, 385, 386
PdiI	GCCGGC	1 cut(s)	443
PkrI	GCNGC	4 cut(s)	121, 319, 341, 394
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
Psp124BI	GAGCTC	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	402
PspGI	CCWGG	1 cut(s)	402
PspN4I	GGNNCC	5 cut(s)	172, 212, 294, 385, 386
PspOMI	GGGCCC	1 cut(s)	384
PspPI	GGNCC	7 cut(s)	79, 186, 262, 346, 384, 385, 439
PstI	CTGCAG	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	237
RigI	GGCCGGCC	1 cut(s)	445
RsaI	GTAC	2 cut(s)	132, 172
RsaNI	GTAC	2 cut(s)	131, 171
RseI	CAYNNNNRTG	1 cut(s)	194
SacI	GAGCTC	1 cut(s)	282
SatI	GCNGC	4 cut(s)	120, 318, 340, 393
Sau3AI	GATC	1 cut(s)	237
Sau96I	GGNCC	7 cut(s)	79, 186, 262, 346, 384, 385, 439
SchI	GAGTC	1 cut(s)	154
ScrFI	CCNGG	1 cut(s)	404
SduI	GDGCHC	3 cut(s)	21, 282, 388
SfcI	CTRYAG	2 cut(s)	48, 393
SmiMI	CAYNNNNRTG	1 cut(s)	194
Sse9I	AATT	1 cut(s)	329
SsiI	CCGC	5 cut(s)	23, 82, 168, 340, 437
SspMI	CTAG	2 cut(s)	147, 302
SstI	GAGCTC	1 cut(s)	282
StyD4I	CCNGG	1 cut(s)	402
StyI	CCWWGG	1 cut(s)	312
TaiI	ACGT	2 cut(s)	78, 364
TaqI	TCGA	1 cut(s)	13
TasI	AATT	1 cut(s)	329
TauI	GCSGC	1 cut(s)	342
TseI	GCWGC	3 cut(s)	119, 317, 392
TspGWI	ACGGA	1 cut(s)	148
XspI	CTAG	2 cut(s)	147, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.