Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004550

Physical Location & Seq

Genomic Coordinates Forward (+)

37445939 .. 37447789

Gene Structure 1851 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45387

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAAGGTGAAGGGAAATCTGGTTTTGATGGTTTTGGGACCTATGCTGCGCTCCAAAACAACTGACGAATGGCGGTCAATTGTAAACAATAAAATATGGGATTTACCAGAAGGAGAAAAAAGAATTTTGTCAATTTTGAAGTTGAGTTTTGATGAATTGAAACCTTCATCCTTGAAACAATGTTTTGCATATTGCTCGATGTTCTTCAAAGATTTTGATATTGAAAAGGATGACTTGATCCAACTATGGATGGCTCAGGGGTGGCTTCACCCTTGTCCTGACAAAAGCCTAGACATGGAGGAGAGAGGTAATGAATATTTTAAAATCCTATTGGCGAAGTCGTTTTTTCAAGACGCTAGAAAGGATTATGGTGGTAATGTTACAAAATGTAAGATGCACGATCTTGTGCATGATCTTGCAGAACGTGTATCAAAATCAAGGAACTTACACTCAATTTTTCCCAATGGAGAAGTCCTTGACCTTGAGAGCAACTTACTTAATTTTAAATCTTTACGTGTCTTAAATTTATACAATGCAGAAATTATGGAGTTGCCAATTTCAATTGGGAAGTTGAAACATTTGAGGTATCTGAATGTTTTGAAAACAAGAATCAAAACATTTCCCAAATCAATTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03460 ko04014 map03460 map04014

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

212

Amino Acids

24.67

Weight (kDa)

9.06

Isoelectric Point (pI)

32.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_DRP	PF23559	67 - 140	9.8e-25	Disease resistance protein Winged helix domain
LRR_14	PF23598	164 - 211	4.6e-08	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004550)

Species	Orthologous Gene IDs
malus_domestica	MD12G1127500.v1.1 MD12G1127800.v1.1
pyrus_communis	pycom15g22880
rosa_chinensis	RchiOBHm_Chr3g0490741 RchiOBHm_Chr3g0490781 RchiOBHm_Chr5g0036381 RchiOBHm_Chr7g0204711
rosa_multiflora	Rmu_co8157836.1_g000001 Rmu_co8197550.1_g000002 Rmu_co8285827.1_g000001 Rmu_sc0000962.1_g000051 Rmu_sc0001049.1_g000003 Rmu_sc0002263.1_g000051 Rmu_sc0002489.1_g000041 Rmu_sc0004142.1_g000006 Rmu_sc0005425.1_g000014 Rmu_sc0037878.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137800 Rroxscaffold_3G00248860 Rroxscaffold_5G00339360 Rroxscaffold_5G00378250 Rroxscaffold_6G00390190 Rroxscaffold_6G00393530 Rroxscaffold_7G00199500
rosa_samantha	Rh1BG194600 Rh3DG134500 Rh3DG149400 Rh3DG157200 Rh3DG157400 Rh4BG185400 Rh5CG399000
rosa_wichuraiana	Rw3G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	73
AclWI	GGATC	1 cut(s)	232
AcsI	RAATTY	2 cut(s)	123, 523
AfiI	CCNNNNNNNGG	1 cut(s)	295
AflIII	ACRYGT	2 cut(s)	424, 514
AgsI	TTSAA	9 cut(s)	139, 160, 175, 208, 224, 350, 561, 574, 601
AlwI	GGATC	1 cut(s)	232
ApeKI	GCWGC	1 cut(s)	46
ApoI	RAATTY	2 cut(s)	123, 523
AspLEI	GCGC	1 cut(s)	51
AspS9I	GGNCC	1 cut(s)	38
AsuHPI	GGTGA	2 cut(s)	19, 260
AvaII	GGWCC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	33
BccI	CCATC	2 cut(s)	22, 244
BcgI	CGANNNNNNTGC	2 cut(s)	177, 211
BfaI	CTAG	2 cut(s)	290, 357
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
Bme18I	GGWCC	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	39
BmsI	GCATC	1 cut(s)	384
Bpu10I	CCTNAGC	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	503
BsaAI	YACGTR	1 cut(s)	515
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
BseGI	GGATG	3 cut(s)	167, 235, 255
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseMII	CTCAG	1 cut(s)	269
BseRI	GAGGAG	1 cut(s)	314
BseXI	GCAGC	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	51
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmFI	GGGAC	1 cut(s)	51
Bsp143I	GATC	3 cut(s)	237, 400, 412
BspACI	CCGC	1 cut(s)	73
BspCNI	CTCAG	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	39
BspPI	GGATC	1 cut(s)	232
BssMI	GATC	3 cut(s)	237, 400, 412
BstBAI	YACGTR	1 cut(s)	515
BstDEI	CTNAG	1 cut(s)	255
BstF5I	GGATG	3 cut(s)	167, 235, 255
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	3 cut(s)	240, 403, 415
BstMBI	GATC	3 cut(s)	237, 400, 412
BstV1I	GCAGC	1 cut(s)	33
BtsCI	GGATG	3 cut(s)	167, 235, 255
CfoI	GCGC	1 cut(s)	51
Cfr13I	GGNCC	1 cut(s)	38
CseI	GACGC	1 cut(s)	362
CviAII	CATG	2 cut(s)	295, 410
CviJI	RGCY	3 cut(s)	254, 265, 288
CviKI_1	RGCY	3 cut(s)	254, 265, 288
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	3 cut(s)	239, 402, 414
DpnII	GATC	3 cut(s)	237, 400, 412
DraI	TTTAAA	2 cut(s)	322, 505
Eco47I	GGWCC	1 cut(s)	38
EcoO109I	RGGNCCY	1 cut(s)	38
FaeI	CATG	2 cut(s)	298, 413
FaiI	YATR	9 cut(s)	44, 97, 190, 247, 296, 369, 411, 529, 545
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FaqI	GGGAC	1 cut(s)	51
FatI	CATG	2 cut(s)	294, 409
Fnu4HI	GCNGC	1 cut(s)	47
FokI	GGATG	3 cut(s)	154, 242, 262
Fsp4HI	GCNGC	1 cut(s)	47
FspBI	CTAG	2 cut(s)	290, 357
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	1 cut(s)	47
HgaI	GACGC	1 cut(s)	362
HhaI	GCGC	1 cut(s)	51
Hin1II	CATG	2 cut(s)	298, 413
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HinfI	GANTC	1 cut(s)	609
HphI	GGTGA	2 cut(s)	19, 260
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	1 cut(s)	591
Hpy188III	TCNNGA	2 cut(s)	278, 350
Hpy8I	GTNNAC	1 cut(s)	85
HpyAV	CCTTC	3 cut(s)	4, 104, 174
HpyCH4IV	ACGT	2 cut(s)	424, 514
HpyCH4V	TGCA	5 cut(s)	188, 397, 409, 419, 536
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	2 cut(s)	424, 514
Hsp92II	CATG	2 cut(s)	298, 413
HspAI	GCGC	1 cut(s)	49
Kzo9I	GATC	3 cut(s)	237, 400, 412
LmnI	GCTCC	1 cut(s)	56
LpnPI	CCDG	4 cut(s)	5, 120, 242, 291
Lsp1109I	GCAGC	1 cut(s)	33
LweI	GCATC	1 cut(s)	384
MaeI	CTAG	2 cut(s)	290, 357
MaeII	ACGT	2 cut(s)	424, 514
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	3 cut(s)	239, 402, 414
MboI	GATC	3 cut(s)	237, 400, 412
MboII	GAAGA	1 cut(s)	196
MfeI	CAATTG	3 cut(s)	78, 561, 630
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	3 cut(s)	292, 299, 576
MseI	TTAA	4 cut(s)	321, 498, 504, 521
MunI	CAATTG	3 cut(s)	78, 561, 630
NdeII	GATC	3 cut(s)	237, 400, 412
NlaIII	CATG	2 cut(s)	298, 413
NlaIV	GGNNCC	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	609
PkrI	GCNGC	1 cut(s)	48
Ppu21I	YACGTR	1 cut(s)	515
PpuMI	RGGWCCY	1 cut(s)	38
Psp5II	RGGWCCY	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	38
PspPPI	RGGWCCY	1 cut(s)	38
SaqAI	TTAA	4 cut(s)	321, 498, 504, 521
SatI	GCNGC	1 cut(s)	47
Sau3AI	GATC	3 cut(s)	237, 400, 412
Sau96I	GGNCC	1 cut(s)	38
SetI	ASST	8 cut(s)	9, 43, 166, 310, 427, 483, 517, 587
SfaNI	GCATC	1 cut(s)	384
SinI	GGWCC	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
SsiI	CCGC	1 cut(s)	73
SspI	AATATT	1 cut(s)	317
SspMI	CTAG	2 cut(s)	290, 357
TaiI	ACGT	2 cut(s)	427, 517
TaqI	TCGA	1 cut(s)	197
TfiI	GAWTC	1 cut(s)	609
Tru1I	TTAA	4 cut(s)	321, 498, 504, 521
Tru9I	TTAA	4 cut(s)	321, 498, 504, 521
TseI	GCWGC	1 cut(s)	46
TspDTI	ATGAA	4 cut(s)	17, 156, 168, 327
VpaK11BI	GGWCC	1 cut(s)	38
XapI	RAATTY	2 cut(s)	123, 523
XspI	CTAG	2 cut(s)	290, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.