Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004550

Physical Location & Seq

Genomic Coordinates Reverse (-)

4776744 .. 4777049

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00390190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCGAAACTCGCGCCGGACCCTCGAGCCTCCGCGGTGGTCCCGTCAAACCAAGTTCGTGAGGCCGCCGCCGGAGCCGTGGGCGAAGATGAAGGGAACGAGGAACCCATCGGCCCTCTTGCAATAGTGGTCTACAATCGTGCCGCAACTCCCCCGCCAACTCCTCCTACTAGGCTTGAGAGACTTGCTCGTGCTCTTGCGGCCCATCCTCCGACCGCCGCCGAACTAGCTAGGGCGGAACTTCGAAATCTTCCGGGACAACGGCGGTTGGGGCTCGCGGAACTTGACAGGTCCGGGAGGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

101

Amino Acids

10.58

Weight (kDa)

8.36

Isoelectric Point (pI)

37.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004550)

Species	Orthologous Gene IDs
malus_domestica	MD12G1127500.v1.1 MD12G1127800.v1.1
pyrus_communis	pycom15g22880
rosa_chinensis	RchiOBHm_Chr3g0490741 RchiOBHm_Chr3g0490781 RchiOBHm_Chr5g0036381 RchiOBHm_Chr7g0204711
rosa_multiflora	Rmu_co8157836.1_g000001 Rmu_co8197550.1_g000002 Rmu_co8285827.1_g000001 Rmu_sc0000962.1_g000051 Rmu_sc0001049.1_g000003 Rmu_sc0002263.1_g000051 Rmu_sc0002489.1_g000041 Rmu_sc0004142.1_g000006 Rmu_sc0005425.1_g000014 Rmu_sc0037878.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137800 Rroxscaffold_3G00248860 Rroxscaffold_5G00339360 Rroxscaffold_5G00378250 Rroxscaffold_6G00390190 Rroxscaffold_6G00393530 Rroxscaffold_7G00199500
rosa_samantha	Rh1BG194600 Rh3DG134500 Rh3DG149400 Rh3DG157200 Rh3DG157400 Rh4BG185400 Rh5CG399000
rosa_wichuraiana	Rw3G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	132
AccII	CGCG	3 cut(s)	14, 35, 278
AluBI	AGCT	1 cut(s)	230
AluI	AGCT	1 cut(s)	230
Alw21I	GWGCWC	1 cut(s)	196
Alw26I	GTCTC	1 cut(s)	175
Ama87I	CYCGRG	1 cut(s)	24
AoxI	GGCC	4 cut(s)	63, 112, 201, 299
AspLEI	GCGC	1 cut(s)	16
AspS9I	GGNCC	5 cut(s)	19, 40, 113, 202, 291
AsuC2I	CCSGG	2 cut(s)	255, 295
AsuII	TTCGAA	1 cut(s)	244
AvaI	CYCGRG	1 cut(s)	24
AvaII	GGWCC	3 cut(s)	19, 40, 291
BanII	GRGCYC	1 cut(s)	276
BauI	CACGAG	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	196
BccI	CCATC	2 cut(s)	116, 213
BceAI	ACGGC	2 cut(s)	62, 278
BcnI	CCSGG	2 cut(s)	255, 295
BcoDI	GTCTC	1 cut(s)	175
BfaI	CTAG	3 cut(s)	171, 227, 231
BisI	GCNGC	5 cut(s)	66, 69, 144, 201, 219
BlsI	GCNGC	5 cut(s)	67, 70, 145, 202, 220
Bme1390I	CCNGG	2 cut(s)	255, 295
Bme18I	GGWCC	3 cut(s)	19, 40, 291
BmeT110I	CYCGRG	1 cut(s)	24
BmgT120I	GGNCC	5 cut(s)	19, 40, 113, 202, 291
BmiI	GGNNCC	4 cut(s)	21, 42, 76, 105
BmrFI	CCNGG	2 cut(s)	255, 295
BplI	GAGNNNNNCTC	2 cut(s)	172, 204
Bpu14I	TTCGAA	1 cut(s)	244
BpuEI	CTTGAG	1 cut(s)	197
BpuMI	CCSGG	2 cut(s)	255, 295
BsaJI	CCNNGG	2 cut(s)	33, 78
BseDI	CCNNGG	2 cut(s)	33, 78
BseGI	GGATG	1 cut(s)	205
BseRI	GAGGAG	1 cut(s)	153
Bsh1236I	CGCG	3 cut(s)	14, 35, 278
Bsh1285I	CGRYCG	1 cut(s)	216
BshFI	GGCC	4 cut(s)	65, 114, 203, 301
BsiEI	CGRYCG	1 cut(s)	216
BsiHKAI	GWGCWC	1 cut(s)	196
BsiHKCI	CYCGRG	1 cut(s)	24
BsiSI	CCGG	4 cut(s)	17, 72, 254, 294
BslFI	GGGAC	2 cut(s)	26, 270
BsmAI	GTCTC	1 cut(s)	175
BsmFI	GGGAC	2 cut(s)	26, 270
BsnI	GGCC	4 cut(s)	65, 114, 203, 301
BsoBI	CYCGRG	1 cut(s)	24
Bsp119I	TTCGAA	1 cut(s)	244
Bsp1286I	GDGCHC	2 cut(s)	196, 276
BspANI	GGCC	4 cut(s)	65, 114, 203, 301
BspFNI	CGCG	3 cut(s)	14, 35, 278
BspLI	GGNNCC	4 cut(s)	21, 42, 76, 105
BspT104I	TTCGAA	1 cut(s)	244
BssECI	CCNNGG	2 cut(s)	33, 78
BssSI	CACGAG	1 cut(s)	189
Bst2BI	CACGAG	1 cut(s)	189
BstBI	TTCGAA	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	276
BstDSI	CCRYGG	2 cut(s)	33, 78
BstF5I	GGATG	1 cut(s)	205
BstFNI	CGCG	3 cut(s)	14, 35, 278
BstHHI	GCGC	1 cut(s)	16
BstMAI	GTCTC	1 cut(s)	175
BstMCI	CGRYCG	1 cut(s)	216
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 74, 200, 227, 271
BstSCI	CCNGG	2 cut(s)	253, 293
BstUI	CGCG	3 cut(s)	14, 35, 278
BsuRI	GGCC	4 cut(s)	65, 114, 203, 301
BtgI	CCRYGG	2 cut(s)	33, 78
BtsCI	GGATG	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	276
CfoI	GCGC	1 cut(s)	16
Cfr13I	GGNCC	5 cut(s)	19, 40, 113, 202, 291
Cfr42I	CCGCGG	1 cut(s)	36
CviJI	RGCY	9 cut(s)	29, 65, 77, 114, 175, 203, 230, 274, 301
CviKI_1	RGCY	9 cut(s)	29, 65, 77, 114, 175, 203, 230, 274, 301
EciI	GGCGGA	1 cut(s)	251
Eco24I	GRGCYC	1 cut(s)	276
Eco47I	GGWCC	3 cut(s)	19, 40, 291
Eco88I	CYCGRG	1 cut(s)	24
EcoT38I	GRGCYC	1 cut(s)	276
FaiI	YATR	1 cut(s)	304
FaqI	GGGAC	2 cut(s)	26, 270
FauI	CCCGC	1 cut(s)	162
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	5 cut(s)	66, 69, 144, 201, 219
FokI	GGATG	1 cut(s)	192
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	5 cut(s)	66, 69, 144, 201, 219
FspBI	CTAG	3 cut(s)	171, 227, 231
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	5 cut(s)	66, 69, 144, 201, 219
HaeIII	GGCC	4 cut(s)	65, 114, 203, 301
HapII	CCGG	4 cut(s)	17, 72, 254, 294
HhaI	GCGC	1 cut(s)	16
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HpaII	CCGG	4 cut(s)	17, 72, 254, 294
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	213
Hpy188III	TCNNGA	1 cut(s)	59
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	1 cut(s)	86
HpyCH4V	TGCA	1 cut(s)	122
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 74, 200, 227, 271
HspAI	GCGC	1 cut(s)	14
KspI	CCGCGG	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	74
LpnPI	CCDG	4 cut(s)	30, 85, 267, 274
MaeI	CTAG	3 cut(s)	171, 227, 231
MboII	GAAGA	2 cut(s)	98, 242
MhlI	GDGCHC	2 cut(s)	196, 276
MmeI	TCCRAC	1 cut(s)	236
MnlI	CCTC	8 cut(s)	33, 40, 55, 94, 126, 174, 219, 291
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	4 cut(s)	17, 72, 254, 294
MspR9I	CCNGG	2 cut(s)	255, 295
MvnI	CGCG	3 cut(s)	14, 35, 278
MwoI	GCNNNNNNNGC	5 cut(s)	11, 74, 200, 227, 271
NciI	CCSGG	2 cut(s)	255, 295
NlaIV	GGNNCC	4 cut(s)	21, 42, 76, 105
NspV	TTCGAA	1 cut(s)	244
PaeR7I	CTCGAG	1 cut(s)	24
PfoI	TCCNGGA	2 cut(s)	253, 293
PkrI	GCNGC	5 cut(s)	67, 70, 145, 202, 220
PspN4I	GGNNCC	4 cut(s)	21, 42, 76, 105
PspPI	GGNCC	5 cut(s)	19, 40, 113, 202, 291
PspXI	VCTCGAGB	1 cut(s)	24
SacII	CCGCGG	1 cut(s)	36
SatI	GCNGC	5 cut(s)	66, 69, 144, 201, 219
Sau96I	GGNCC	5 cut(s)	19, 40, 113, 202, 291
ScrFI	CCNGG	2 cut(s)	255, 295
SduI	GDGCHC	2 cut(s)	196, 276
SetI	ASST	2 cut(s)	232, 293
Sfr274I	CTCGAG	1 cut(s)	24
Sfr303I	CCGCGG	1 cut(s)	36
SfuI	TTCGAA	1 cut(s)	244
SgrBI	CCGCGG	1 cut(s)	36
SinI	GGWCC	3 cut(s)	19, 40, 291
SlaI	CTCGAG	1 cut(s)	24
SmlI	CTYRAG	2 cut(s)	24, 176
SmoI	CTYRAG	2 cut(s)	24, 176
SspMI	CTAG	3 cut(s)	171, 227, 231
StyD4I	CCNGG	2 cut(s)	253, 293
TaqI	TCGA	2 cut(s)	25, 244
TauI	GCSGC	5 cut(s)	68, 71, 146, 203, 221
TspDTI	ATGAA	1 cut(s)	105
VpaK11BI	GGWCC	3 cut(s)	19, 40, 291
XhoI	CTCGAG	1 cut(s)	24
XmiI	GTMKAC	1 cut(s)	132
XspI	CTAG	3 cut(s)	171, 227, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.