pycom15g22880

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0004550
Physical Location & Seq
Reverse (-)
16929099 .. 16930551
1453 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1356 bp
ATGGCTCAAGGATTGCTCCGCTCTCCAAGTAGTCGAGAGATGGAGGATATAGGTAATGAATATTTCAACAGTCTATTAGAGAACTCCTTTTTTCAAGATGTTACGAAGGATCGCTACGGGTTTATCATCAGATGCAAGATGCATGATATCGTACATGATCTTGCAGAACTAGCGTCAAAATCTGATCGAGAAGATGAACTGAACCTCCTAAGGGAGCCACATATTCCTTCAATACAACAAAGAAAAGAAATGTTGAGAAAGTGCGCTCCCTATCTAAATGGTGAACTTTGTAACTTCTTCTCAAGCTTCAAGGCTTTACATGTGTTAAATCTATTCTGTTATGATCTTAAGGAGTTGCCCAATTCAATTGGTGAGCTAAGACACTTGAGGTATCTCAACATTTCCAGAACAAAAATCAGGAGTGTTGACTCCGACGGGATCTCTCGAGAGTTCAATGTTTCCAATAGAGCTGGAAAATTTGATCAACTTGCGACATGTTTATTTCCACAAGTGTGTGGTTCCGTTTGGGATGAGATGATTGACTCATCTTCAAACGTTACGTTTCTTTACTTGGATAGCGCGAGGAAAAGCTTAAACATTCTTGAATGTCCAGCTCTGATTGAATGGAAGGAAGCGGTTGTTGTGATGCCATTGCCAACCGATGAGAAAGTAGCGCCAGTAGTGTTTCCCTGCCTCGAGCAGTTGACTCTCTCTTCTTGTACAGAATTGAGAAATGCTCCTGCAAATTTTCCATCTCTCCAAAAGTTGAAGTTAGATTGTACTGGCACCGTCGCGTCAATAGAAAATATAAGCAGTCGACTAACTACTCTCACTTCCCTTGAAATACATGGCGCCAATGAGCTTACTTGTCTGCCAGCAGGGATGGTGGAAGAGAACCACAATCTTCGGTCACTGCTTATCAGGAATTGTGAAAAGCTGAGGCAATTGCCCAAGGGGCTGGACACACTCCCTCTTCTTGAGAAGCTAACTCTTAAGGAATTGTCCTTGTTTAGAGATTGCAAGACATTGTCGAGCTCGCTGGGCGGGTTAGAAGACTGCACCGCTCTTGAGACGTTGAGAATAAATTGTTGCCCCAATCTGACATCCATTCCAATTTCACCATCCCTCCTCGGTTGTGATGAATTATCAAGCCTACCGGGTGGTCTTGAACATTGCACGTCTCTTCAGGATTTGGCAATAGTAACGAATTGTGCAAAGATCACATCCCTTTCAATTCGCAACTTACCTTCCTCTGCGAGTTGCATATTTCGAATTGGCGTGGTTCAAAGAATCTGCAAACTGCATCTCCTGACGAGGAGTTATCTTTGCACGGTTGCACATCCCTCCGTCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 ko04014 map03460 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

452

Amino Acids

50.37

Weight (kDa)

5.88

Isoelectric Point (pI)

56.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 1 - 55 1.2e-16 Disease resistance protein Winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 785, 851
AccBSI CCGCTC 2 cut(s) 21, 1064
AccI GTMKAC 1 cut(s) 817
AccII CGCG 2 cut(s) 581, 794
AciI CCGC 4 cut(s) 19, 635, 1044, 1062
AclI AACGTT 1 cut(s) 555
AclWI GGATC 2 cut(s) 117, 446
AcsI RAATTY 2 cut(s) 476, 745
AcuI CTGAAG 1 cut(s) 1169
AcyI GRCGYC 1 cut(s) 852
AfaI GTAC 3 cut(s) 153, 721, 781
AfiI CCNNNNNNNGG 1 cut(s) 211
AflII CTTAAG 2 cut(s) 347, 992
AflIII ACRYGT 2 cut(s) 319, 494
AjiI CACGTC 1 cut(s) 1179
AleI CACNNNNGTG 1 cut(s) 511
AloI GAACNNNNNNTCC 2 cut(s) 189, 221
AluBI AGCT 9 cut(s) 306, 376, 470, 591, 614, 862, 937, 985, 1035
AluI AGCT 9 cut(s) 306, 376, 470, 591, 614, 862, 937, 985, 1035
Alw21I GWGCWC 1 cut(s) 1037
Alw26I GTCTC 2 cut(s) 1064, 1185
AlwI GGATC 2 cut(s) 117, 446
Ama87I CYCGRG 2 cut(s) 444, 695
ApoI RAATTY 2 cut(s) 476, 745
AspLEI GCGC 4 cut(s) 266, 581, 676, 854
AsuC2I CCSGG 1 cut(s) 1158
AsuHPI GGTGA 3 cut(s) 293, 383, 1110
AsuII TTCGAA 1 cut(s) 1270
AvaI CYCGRG 2 cut(s) 444, 695
AxyI CCTNAGG 1 cut(s) 209
BanI GGYRCC 2 cut(s) 785, 851
BanII GRGCYC 1 cut(s) 1037
BarI GAAGNNNNNNTAC 2 cut(s) 98, 130
BbsI GAAGAC 1 cut(s) 1059
Bbv12I GWGCWC 1 cut(s) 1037
BbvCI CCTCAGC 1 cut(s) 938
BccI CCATC 4 cut(s) 34, 760, 877, 1129
BclI TGATCA 1 cut(s) 481
BcnI CCSGG 1 cut(s) 1158
BcoDI GTCTC 2 cut(s) 1064, 1185
BfaI CTAG 1 cut(s) 170
BfoI RGCGCY 2 cut(s) 677, 855
BfrI CTTAAG 2 cut(s) 347, 992
BglI GCCNNNNNGGC 1 cut(s) 955
Bme1390I CCNGG 1 cut(s) 1158
BmeT110I CYCGRG 2 cut(s) 444, 695
BmgBI CACGTC 1 cut(s) 1179
BmiI GGNNCC 4 cut(s) 216, 520, 787, 853
BmrFI CCNGG 1 cut(s) 1158
BmsI GCATC 4 cut(s) 122, 129, 636, 1312
BpiI GAAGAC 1 cut(s) 1059
BplI GAGNNNNNCTC 2 cut(s) 721, 753
Bpu10I CCTNAGC 1 cut(s) 938
Bpu14I TTCGAA 1 cut(s) 1270
BpuEI CTTGAG 4 cut(s) 286, 406, 998, 1088
BpuMI CCSGG 1 cut(s) 1158
BsaHI GRCGYC 1 cut(s) 852
BsaJI CCNNGG 2 cut(s) 951, 1129
BsaXI ACNNNNNCTCC 6 cut(s) 189, 219, 1110, 1140, 1290, 1320
Bsc4I CCNNNNNNNGG 1 cut(s) 211
Bse1I ACTGG 2 cut(s) 677, 787
Bse21I CCTNAGG 1 cut(s) 209
Bse3DI GCAATG 2 cut(s) 650, 1171
BseDI CCNNGG 2 cut(s) 951, 1129
BseGI GGATG 6 cut(s) 535, 888, 1103, 1121, 1223, 1339
BseLI CCNNNNNNNGG 1 cut(s) 211
BseMI GCAATG 2 cut(s) 650, 1171
BseMII CTCAG 1 cut(s) 929
BseNI ACTGG 2 cut(s) 677, 787
BseRI GAGGAG 2 cut(s) 1118, 1330
BseYI CCCAGC 1 cut(s) 1039
BsgI GTGCAG 1 cut(s) 1042
Bsh1236I CGCG 2 cut(s) 581, 794
BshNI GGYRCC 2 cut(s) 785, 851
BsiHKAI GWGCWC 1 cut(s) 1037
BsiHKCI CYCGRG 2 cut(s) 444, 695
BsiSI CCGG 1 cut(s) 1157
BslI CCNNNNNNNGG 1 cut(s) 211
BsmAI GTCTC 2 cut(s) 1064, 1185
BsmBI CGTCTC 2 cut(s) 1064, 1185
BsoBI CYCGRG 2 cut(s) 444, 695
Bsp119I TTCGAA 1 cut(s) 1270
Bsp1286I GDGCHC 1 cut(s) 1037
Bsp1407I TGTACA 1 cut(s) 719
Bsp143I GATC 7 cut(s) 109, 157, 184, 343, 438, 481, 1218
BspACI CCGC 4 cut(s) 19, 635, 1044, 1062
BspCNI CTCAG 1 cut(s) 930
BspFNI CGCG 2 cut(s) 581, 794
BspLI GGNNCC 4 cut(s) 216, 520, 787, 853
BspPI GGATC 2 cut(s) 117, 446
BspT104I TTCGAA 1 cut(s) 1270
BspT107I GGYRCC 2 cut(s) 785, 851
BspTI CTTAAG 2 cut(s) 347, 992
BsrBI CCGCTC 2 cut(s) 21, 1064
BsrDI GCAATG 2 cut(s) 650, 1171
BsrGI TGTACA 1 cut(s) 719
BsrI ACTGG 2 cut(s) 677, 787
BssECI CCNNGG 2 cut(s) 951, 1129
BssMI GATC 7 cut(s) 109, 157, 184, 343, 438, 481, 1218
BssNI GRCGYC 1 cut(s) 852
BssT1I CCWWGG 1 cut(s) 951
Bst4CI ACNGT 3 cut(s) 71, 790, 1333
Bst6I CTCTTC 4 cut(s) 718, 885, 978, 1188
BstACI GRCGYC 1 cut(s) 852
BstAFI CTTAAG 2 cut(s) 347, 992
BstAUI TGTACA 1 cut(s) 719
BstBI TTCGAA 1 cut(s) 1270
BstC8I GCNNGC 2 cut(s) 876, 1037
BstDEI CTNAG 3 cut(s) 209, 377, 938
BstF5I GGATG 6 cut(s) 535, 888, 1103, 1121, 1223, 1339
BstFNI CGCG 2 cut(s) 581, 794
BstH2I RGCGCY 2 cut(s) 677, 855
BstHHI GCGC 4 cut(s) 266, 581, 676, 854
BstKTI GATC 7 cut(s) 112, 160, 187, 346, 441, 484, 1221
BstMAI GTCTC 2 cut(s) 1064, 1185
BstMBI GATC 7 cut(s) 109, 157, 184, 343, 438, 481, 1218
BstMWI GCNNNNNNNGC 3 cut(s) 170, 955, 1041
BstNSI RCATGY 2 cut(s) 323, 498
BstSCI CCNGG 1 cut(s) 1156
BstUI CGCG 2 cut(s) 581, 794
BstV2I GAAGAC 1 cut(s) 1059
BstX2I RGATCY 1 cut(s) 438
BstXI CCANNNNNNTGG 1 cut(s) 958
BstYI RGATCY 1 cut(s) 438
Bsu36I CCTNAGG 1 cut(s) 209
BtrI CACGTC 1 cut(s) 1179
BtsCI GGATG 6 cut(s) 535, 888, 1103, 1121, 1223, 1339
BtsI GCAGTG 1 cut(s) 911
BtsIMutI CAGTG 1 cut(s) 911
Cac8I GCNNGC 2 cut(s) 876, 1037
CfoI GCGC 4 cut(s) 266, 581, 676, 854
CseI GACGC 2 cut(s) 162, 783
Csp6I GTAC 3 cut(s) 152, 720, 780
CviAII CATG 5 cut(s) 143, 155, 320, 495, 848
CviQI GTAC 3 cut(s) 152, 720, 780
DdeI CTNAG 3 cut(s) 209, 377, 938
DinI GGCGCC 1 cut(s) 853
DpnI GATC 7 cut(s) 111, 159, 186, 345, 440, 483, 1220
DpnII GATC 7 cut(s) 109, 157, 184, 343, 438, 481, 1218
Eam1104I CTCTTC 4 cut(s) 718, 885, 978, 1188
EarI CTCTTC 4 cut(s) 718, 885, 978, 1188
Ecl136II GAGCTC 1 cut(s) 1035
Eco130I CCWWGG 1 cut(s) 951
Eco24I GRGCYC 1 cut(s) 1037
Eco32I GATATC 1 cut(s) 148
Eco53kI GAGCTC 1 cut(s) 1035
Eco57I CTGAAG 1 cut(s) 1169
Eco81I CCTNAGG 1 cut(s) 209
Eco88I CYCGRG 2 cut(s) 444, 695
EcoICRI GAGCTC 1 cut(s) 1035
EcoRV GATATC 1 cut(s) 148
EcoT14I CCWWGG 1 cut(s) 951
EcoT22I ATGCAT 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 1037
EgeI GGCGCC 1 cut(s) 853
EheI GGCGCC 1 cut(s) 853
ErhI CCWWGG 1 cut(s) 951
Esp3I CGTCTC 2 cut(s) 1064, 1185
FaeI CATG 5 cut(s) 146, 158, 323, 498, 851
FatI CATG 5 cut(s) 142, 154, 319, 494, 847
FauI CCCGC 1 cut(s) 1037
FbaI TGATCA 1 cut(s) 481
FblI GTMKAC 1 cut(s) 817
FokI GGATG 6 cut(s) 542, 895, 1090, 1108, 1210, 1326
FriOI GRGCYC 1 cut(s) 1037
FspBI CTAG 1 cut(s) 170
GlaI GCGC 4 cut(s) 265, 580, 675, 853
GsaI CCCAGC 1 cut(s) 1043
HaeII RGCGCY 2 cut(s) 677, 855
HapII CCGG 1 cut(s) 1157
HgaI GACGC 2 cut(s) 162, 783
HhaI GCGC 4 cut(s) 266, 581, 676, 854
Hin1I GRCGYC 1 cut(s) 852
Hin1II CATG 5 cut(s) 146, 158, 323, 498, 851
Hin6I GCGC 4 cut(s) 264, 579, 674, 852
HinP1I GCGC 4 cut(s) 264, 579, 674, 852
HincII GTYRAC 3 cut(s) 427, 705, 818
HindII GTYRAC 3 cut(s) 427, 705, 818
HindIII AAGCTT 2 cut(s) 304, 589
HinfI GANTC 4 cut(s) 428, 542, 706, 1290
HpaII CCGG 1 cut(s) 1157
HphI GGTGA 3 cut(s) 293, 383, 1110
Hpy166II GTNNAC 4 cut(s) 284, 427, 705, 818
Hpy188I TCNGA 5 cut(s) 131, 184, 433, 618, 1101
Hpy8I GTNNAC 4 cut(s) 284, 427, 705, 818
Hpy99I CGWCG 3 cut(s) 437, 794, 1352
HpyAV CCTTC 4 cut(s) 100, 237, 622, 1257
HpyCH4III ACNGT 3 cut(s) 71, 790, 1333
HpyCH4IV ACGT 4 cut(s) 555, 560, 1073, 1178
HpyF10VI GCNNNNNNNGC 3 cut(s) 170, 955, 1041
HpyF3I CTNAG 3 cut(s) 209, 377, 938
HpySE526I ACGT 4 cut(s) 555, 560, 1073, 1178
Hsp92I GRCGYC 1 cut(s) 852
Hsp92II CATG 5 cut(s) 146, 158, 323, 498, 851
HspAI GCGC 4 cut(s) 264, 579, 674, 852
KasI GGCGCC 1 cut(s) 851
Ksp22I TGATCA 1 cut(s) 481
Kzo9I GATC 7 cut(s) 109, 157, 184, 343, 438, 481, 1218
LmnI GCTCC 4 cut(s) 21, 214, 271, 742
LweI GCATC 4 cut(s) 122, 129, 636, 1312
MaeI CTAG 1 cut(s) 170
MaeII ACGT 4 cut(s) 555, 560, 1073, 1178
MaeIII GTNAC 5 cut(s) 100, 290, 556, 909, 1201
MalI GATC 7 cut(s) 111, 159, 186, 345, 440, 483, 1220
MbiI CCGCTC 2 cut(s) 21, 1064
MboI GATC 7 cut(s) 109, 157, 184, 343, 438, 481, 1218
MboII GAAGA 9 cut(s) 203, 289, 540, 705, 896, 902, 965, 1064, 1175
MfeI CAATTG 2 cut(s) 366, 944
MflI RGATCY 1 cut(s) 438
MhlI GDGCHC 1 cut(s) 1037
Mly113I GGCGCC 1 cut(s) 852
MlyI GAGTC 3 cut(s) 422, 536, 700
MmeI TCCRAC 1 cut(s) 456
Mph1103I ATGCAT 1 cut(s) 144
MseI TTAA 4 cut(s) 326, 348, 593, 993
MslI CAYNNNNRTG 1 cut(s) 511
MspCI CTTAAG 2 cut(s) 347, 992
MspI CCGG 1 cut(s) 1157
MspR9I CCNGG 1 cut(s) 1158
MunI CAATTG 2 cut(s) 366, 944
MvnI CGCG 2 cut(s) 581, 794
MwoI GCNNNNNNNGC 3 cut(s) 170, 955, 1041
NarI GGCGCC 1 cut(s) 852
NciI CCSGG 1 cut(s) 1158
NdeII GATC 7 cut(s) 109, 157, 184, 343, 438, 481, 1218
NlaIII CATG 5 cut(s) 146, 158, 323, 498, 851
NlaIV GGNNCC 4 cut(s) 216, 520, 787, 853
NmuCI GTSAC 1 cut(s) 909
NsiI ATGCAT 1 cut(s) 144
NspI RCATGY 2 cut(s) 323, 498
NspV TTCGAA 1 cut(s) 1270
OliI CACNNNNGTG 1 cut(s) 511
PaeR7I CTCGAG 2 cut(s) 444, 695
PciI ACATGT 2 cut(s) 319, 494
PfeI GAWTC 1 cut(s) 1290
PflFI GACNNNGTC 1 cut(s) 1027
PleI GAGTC 3 cut(s) 422, 536, 700
PluTI GGCGCC 1 cut(s) 855
PpsI GAGTC 3 cut(s) 422, 536, 700
PscI ACATGT 2 cut(s) 319, 494
Psp124BI GAGCTC 1 cut(s) 1037
Psp1406I AACGTT 1 cut(s) 555
PspFI CCCAGC 1 cut(s) 1039
PspN4I GGNNCC 4 cut(s) 216, 520, 787, 853
PspXI VCTCGAGB 1 cut(s) 695
PsuI RGATCY 1 cut(s) 438
PsyI GACNNNGTC 1 cut(s) 1027
RsaI GTAC 3 cut(s) 153, 721, 781
RsaNI GTAC 3 cut(s) 152, 720, 780
RseI CAYNNNNRTG 1 cut(s) 511
SacI GAGCTC 1 cut(s) 1037
SalI GTCGAC 1 cut(s) 816
SaqAI TTAA 4 cut(s) 326, 348, 593, 993
Sau3AI GATC 7 cut(s) 109, 157, 184, 343, 438, 481, 1218
SchI GAGTC 3 cut(s) 422, 536, 700
ScrFI CCNGG 1 cut(s) 1158
SduI GDGCHC 1 cut(s) 1037
SfaNI GCATC 4 cut(s) 122, 129, 636, 1312
SfoI GGCGCC 1 cut(s) 853
Sfr274I CTCGAG 2 cut(s) 444, 695
SfuI TTCGAA 1 cut(s) 1270
SlaI CTCGAG 2 cut(s) 444, 695
SmiMI CAYNNNNRTG 1 cut(s) 511
SmlI CTYRAG 9 cut(s) 6, 301, 347, 385, 444, 695, 977, 992, 1067
SmoI CTYRAG 9 cut(s) 6, 301, 347, 385, 444, 695, 977, 992, 1067
SsiI CCGC 4 cut(s) 19, 635, 1044, 1062
SspDI GGCGCC 1 cut(s) 851
SspI AATATT 1 cut(s) 62
SspMI CTAG 1 cut(s) 170
SstI GAGCTC 1 cut(s) 1037
StyD4I CCNGG 1 cut(s) 1156
StyI CCWWGG 1 cut(s) 951
TaaI ACNGT 3 cut(s) 71, 790, 1333
TaiI ACGT 4 cut(s) 558, 563, 1076, 1181
TaqI TCGA 8 cut(s) 34, 187, 445, 696, 817, 1031, 1270, 1350
TaqII GACCGA 1 cut(s) 897
TatI WGTACW 2 cut(s) 719, 779
TfiI GAWTC 1 cut(s) 1290
Tru1I TTAA 4 cut(s) 326, 348, 593, 993
Tru9I TTAA 4 cut(s) 326, 348, 593, 993
TscAI CASTG 1 cut(s) 918
TseFI GTSAC 1 cut(s) 909
Tsp45I GTSAC 1 cut(s) 909
TspDTI ATGAA 3 cut(s) 72, 210, 1155
TspGWI ACGGA 2 cut(s) 511, 1336
TspRI CASTG 1 cut(s) 918
Tth111I GACNNNGTC 1 cut(s) 1027
Vha464I CTTAAG 2 cut(s) 347, 992
XapI RAATTY 2 cut(s) 476, 745
XceI RCATGY 2 cut(s) 323, 498
XhoI CTCGAG 2 cut(s) 444, 695
XmiI GTMKAC 1 cut(s) 817
XspI CTAG 1 cut(s) 170
Zsp2I ATGCAT 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.