pycom16g09930

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0001080
Physical Location & Seq
Reverse (-)
6736689 .. 6737090
402 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 402 bp
ATGGCTGAGCTACTCCGCAACCTGGAAAAGCTGTCAAAAGCTCAAGCGGAGTTGAAGCAGGTCATCAGGAAAGGAAAACCGGTTGAGGAATCCGACGTTGCTCGACTTCCTTACTTACAAGCAATAATAAAAGAGACCTTCCGTTTGTACCCAGCAGCACCTTTACTACTTCCCCGAAAAGCCGAAACAGACGTTGAAATCGGCGGGTACGTTGTACCAAAGGGTGCACAAGTGTTTGTCAATGCATGGGCCATAGGAAGAGATCCTGGAATTTGGGACAACCCGGACTCATTCGTGCCAGAGAGGTTTCTAGGATTGGAAATTGATGTAACCGGCCAGAACTTTGAGCTTATCCCGTTTGGTGTGGGAGGAGAATGTGTCCTGGCTGGCCATTGGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

134

Amino Acids

14.77

Weight (kDa)

5.22

Isoelectric Point (pI)

31.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 123 4.1e-42 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 49
AciI CCGC 3 cut(s) 16, 47, 204
AclWI GGATC 1 cut(s) 257
AcoI YGGCCR 2 cut(s) 334, 388
AcsI RAATTY 1 cut(s) 270
AfaI GTAC 3 cut(s) 149, 209, 216
AfiI CCNNNNNNNGG 1 cut(s) 22
AgeI ACCGGT 1 cut(s) 79
AgsI TTSAA 2 cut(s) 55, 197
AjnI CCWGG 3 cut(s) 21, 265, 381
AluBI AGCT 4 cut(s) 10, 31, 41, 349
AluI AGCT 4 cut(s) 10, 31, 41, 349
Alw21I GWGCWC 1 cut(s) 229
Alw26I GTCTC 1 cut(s) 128
Alw44I GTGCAC 1 cut(s) 225
AlwI GGATC 1 cut(s) 257
AoxI GGCC 3 cut(s) 249, 334, 388
ApaLI GTGCAC 1 cut(s) 225
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 1 cut(s) 270
ArsI GACNNNNNNTTYG 2 cut(s) 127, 159
AsiGI ACCGGT 1 cut(s) 79
AspS9I GGNCC 1 cut(s) 249
AsuC2I CCSGG 1 cut(s) 284
BaeGI GKGCMC 1 cut(s) 229
BalI TGGCCA 1 cut(s) 390
Bbv12I GWGCWC 1 cut(s) 229
BbvI GCAGC 1 cut(s) 167
BciT130I CCWGG 3 cut(s) 23, 267, 383
BcnI CCSGG 1 cut(s) 284
BcoDI GTCTC 1 cut(s) 128
BfaI CTAG 1 cut(s) 311
BfuAI ACCTGC 1 cut(s) 49
BisI GCNGC 1 cut(s) 156
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 4 cut(s) 23, 267, 284, 383
BmgT120I GGNCC 1 cut(s) 249
BmrFI CCNGG 4 cut(s) 23, 267, 284, 383
Bpu1102I GCTNAGC 1 cut(s) 6
BpuEI CTTGAG 1 cut(s) 27
BpuMI CCSGG 1 cut(s) 284
BsaI GGTCTC 1 cut(s) 128
BsaWI WCCGGW 1 cut(s) 79
BsaXI ACNNNNNCTCC 2 cut(s) 363, 393
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse118I RCCGGY 2 cut(s) 79, 332
BseBI CCWGG 3 cut(s) 23, 267, 383
BseLI CCNNNNNNNGG 1 cut(s) 22
BseRI GAGGAG 1 cut(s) 384
BseSI GKGCMC 1 cut(s) 229
BseXI GCAGC 1 cut(s) 167
BseYI CCCAGC 1 cut(s) 151
BshFI GGCC 3 cut(s) 251, 336, 390
BshTI ACCGGT 1 cut(s) 79
BsiHKAI GWGCWC 1 cut(s) 229
BsiSI CCGG 3 cut(s) 80, 284, 333
BslFI GGGAC 1 cut(s) 290
BslI CCNNNNNNNGG 1 cut(s) 22
BsmAI GTCTC 1 cut(s) 128
BsmFI GGGAC 1 cut(s) 290
BsnI GGCC 3 cut(s) 251, 336, 390
Bso31I GGTCTC 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 229
Bsp143I GATC 1 cut(s) 262
Bsp1720I GCTNAGC 1 cut(s) 6
BspACI CCGC 3 cut(s) 16, 47, 204
BspANI GGCC 3 cut(s) 251, 336, 390
BspMI ACCTGC 1 cut(s) 49
BspPI GGATC 1 cut(s) 257
BspTNI GGTCTC 1 cut(s) 128
BsrFI RCCGGY 2 cut(s) 79, 332
BssAI RCCGGY 2 cut(s) 79, 332
BssMI GATC 1 cut(s) 262
Bst2UI CCWGG 3 cut(s) 23, 267, 383
Bst6I CTCTTC 1 cut(s) 253
BstC8I GCNNGC 1 cut(s) 388
BstDEI CTNAG 1 cut(s) 6
BstKTI GATC 1 cut(s) 265
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 1 cut(s) 262
BstNI CCWGG 3 cut(s) 23, 267, 383
BstSCI CCNGG 4 cut(s) 21, 265, 282, 381
BstSLI GKGCMC 1 cut(s) 229
BstV1I GCAGC 1 cut(s) 167
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BsuRI GGCC 3 cut(s) 251, 336, 390
BveI ACCTGC 1 cut(s) 49
Cac8I GCNNGC 1 cut(s) 388
Cfr10I RCCGGY 2 cut(s) 79, 332
Cfr13I GGNCC 1 cut(s) 249
Csp6I GTAC 3 cut(s) 148, 208, 215
CspAI ACCGGT 1 cut(s) 79
CviAII CATG 1 cut(s) 246
CviQI GTAC 3 cut(s) 148, 208, 215
DdeI CTNAG 1 cut(s) 6
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
EaeI YGGCCR 2 cut(s) 334, 388
Eam1104I CTCTTC 1 cut(s) 253
EarI CTCTTC 1 cut(s) 253
Eco31I GGTCTC 1 cut(s) 128
EcoRII CCWGG 3 cut(s) 21, 265, 381
EcoT22I ATGCAT 1 cut(s) 247
FaeI CATG 1 cut(s) 249
FaiI YATR 2 cut(s) 247, 254
FaqI GGGAC 1 cut(s) 290
FatI CATG 1 cut(s) 245
FauI CCCGC 1 cut(s) 197
Fnu4HI GCNGC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 1 cut(s) 311
GluI GCNGC 1 cut(s) 156
GsaI CCCAGC 1 cut(s) 155
HaeIII GGCC 3 cut(s) 251, 336, 390
HapII CCGG 3 cut(s) 80, 284, 333
Hin1II CATG 1 cut(s) 249
HinfI GANTC 2 cut(s) 89, 287
HpaII CCGG 3 cut(s) 80, 284, 333
Hpy166II GTNNAC 1 cut(s) 227
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 1 cut(s) 67
Hpy8I GTNNAC 1 cut(s) 227
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 148
HpyCH4IV ACGT 3 cut(s) 96, 192, 210
HpyCH4V TGCA 2 cut(s) 227, 245
HpyF3I CTNAG 1 cut(s) 6
HpySE526I ACGT 3 cut(s) 96, 192, 210
Hsp92II CATG 1 cut(s) 249
Kzo9I GATC 1 cut(s) 262
Lsp1109I GCAGC 1 cut(s) 167
MaeI CTAG 1 cut(s) 311
MaeII ACGT 3 cut(s) 96, 192, 210
MaeIII GTNAC 1 cut(s) 328
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MboII GAAGA 1 cut(s) 270
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 1 cut(s) 229
MlsI TGGCCA 1 cut(s) 390
MluCI AATT 2 cut(s) 270, 321
MluNI TGGCCA 1 cut(s) 390
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 3 cut(s) 79, 297, 362
Mox20I TGGCCA 1 cut(s) 390
Mph1103I ATGCAT 1 cut(s) 247
MscI TGGCCA 1 cut(s) 390
Msp20I TGGCCA 1 cut(s) 390
MspI CCGG 3 cut(s) 80, 284, 333
MspR9I CCNGG 4 cut(s) 23, 267, 284, 383
MvaI CCWGG 3 cut(s) 23, 267, 383
NciI CCSGG 1 cut(s) 284
NdeII GATC 1 cut(s) 262
NlaIII CATG 1 cut(s) 249
NsiI ATGCAT 1 cut(s) 247
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PfeI GAWTC 1 cut(s) 89
PfoI TCCNGGA 1 cut(s) 265
PinAI ACCGGT 1 cut(s) 79
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
Psp6I CCWGG 3 cut(s) 21, 265, 381
PspFI CCCAGC 1 cut(s) 151
PspGI CCWGG 3 cut(s) 21, 265, 381
PspPI GGNCC 1 cut(s) 249
PsuI RGATCY 1 cut(s) 262
RsaI GTAC 3 cut(s) 149, 209, 216
RsaNI GTAC 3 cut(s) 148, 208, 215
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 1 cut(s) 262
Sau96I GGNCC 1 cut(s) 249
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 4 cut(s) 23, 267, 284, 383
SduI GDGCHC 1 cut(s) 229
SmlI CTYRAG 1 cut(s) 42
SmoI CTYRAG 1 cut(s) 42
Sse9I AATT 2 cut(s) 270, 321
SsiI CCGC 3 cut(s) 16, 47, 204
SspMI CTAG 1 cut(s) 311
StyD4I CCNGG 4 cut(s) 21, 265, 282, 381
TaiI ACGT 3 cut(s) 99, 195, 213
TaqI TCGA 1 cut(s) 103
TasI AATT 2 cut(s) 270, 321
TfiI GAWTC 1 cut(s) 89
TseI GCWGC 1 cut(s) 155
TspGWI ACGGA 1 cut(s) 131
VneI GTGCAC 1 cut(s) 225
XapI RAATTY 1 cut(s) 270
XspI CTAG 1 cut(s) 311
Zsp2I ATGCAT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.