Belongs to the cytochrome P450 family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| p450 | PF00067 | 40 - 489 | 1.6e-104 | Cytochrome P450 |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 783 |
| AccII | CGCG | 3 cut(s) | 216, 272, 574 |
| AciI | CCGC | 9 cut(s) | 214, 270, 272, 727, 730, 923, 1164, 1326, 1363 |
| AclWI | GGATC | 2 cut(s) | 596, 1023 |
| AcoI | YGGCCR | 2 cut(s) | 211, 235 |
| AcsI | RAATTY | 1 cut(s) | 562 |
| AcuI | CTGAAG | 1 cut(s) | 366 |
| AfaI | GTAC | 5 cut(s) | 553, 577, 1169, 1176, 1431 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 146, 677, 698, 754, 907, 1322 |
| AflIII | ACRYGT | 1 cut(s) | 831 |
| AgsI | TTSAA | 3 cut(s) | 64, 1046, 1418 |
| AhlI | ACTAGT | 1 cut(s) | 1039 |
| AjiI | CACGTC | 1 cut(s) | 1153 |
| AjnI | CCWGG | 2 cut(s) | 368, 477 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 659, 691 |
| Alw21I | GWGCWC | 3 cut(s) | 360, 486, 1189 |
| Alw26I | GTCTC | 4 cut(s) | 608, 629, 1215, 1430 |
| Alw44I | GTGCAC | 1 cut(s) | 1185 |
| AlwI | GGATC | 2 cut(s) | 596, 1023 |
| Ama87I | CYCGRG | 2 cut(s) | 1304, 1343 |
| AoxI | GGCC | 8 cut(s) | 107, 125, 211, 235, 366, 1140, 1209, 1294 |
| ApaLI | GTGCAC | 1 cut(s) | 1185 |
| ApeKI | GCWGC | 3 cut(s) | 542, 920, 1348 |
| ApoI | RAATTY | 1 cut(s) | 562 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 547, 579 |
| AspLEI | GCGC | 2 cut(s) | 784, 1120 |
| AspS9I | GGNCC | 3 cut(s) | 125, 322, 1209 |
| AsuC2I | CCSGG | 3 cut(s) | 123, 1344, 1345 |
| AsuHPI | GGTGA | 1 cut(s) | 1459 |
| AvaI | CYCGRG | 2 cut(s) | 1304, 1343 |
| AvaII | GGWCC | 1 cut(s) | 322 |
| BaeGI | GKGCMC | 2 cut(s) | 929, 1189 |
| BanII | GRGCYC | 2 cut(s) | 486, 1467 |
| BbsI | GAAGAC | 2 cut(s) | 20, 1155 |
| Bbv12I | GWGCWC | 3 cut(s) | 360, 486, 1189 |
| BbvI | GCAGC | 3 cut(s) | 529, 907, 1360 |
| BccI | CCATC | 5 cut(s) | 149, 186, 748, 1415, 1471 |
| BceAI | ACGGC | 3 cut(s) | 532, 1105, 1336 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 393, 427 |
| BciT130I | CCWGG | 2 cut(s) | 370, 479 |
| BciVI | GTATCC | 2 cut(s) | 366, 832 |
| BcnI | CCSGG | 3 cut(s) | 123, 1344, 1345 |
| BcoDI | GTCTC | 4 cut(s) | 608, 629, 1215, 1430 |
| BcuI | ACTAGT | 1 cut(s) | 1039 |
| BfaI | CTAG | 2 cut(s) | 1040, 1227 |
| BfoI | RGCGCY | 1 cut(s) | 1121 |
| BfuI | GTATCC | 2 cut(s) | 366, 832 |
| BglII | AGATCT | 1 cut(s) | 1158 |
| BisI | GCNGC | 6 cut(s) | 214, 273, 543, 728, 921, 1349 |
| BlpI | GCTNAGC | 1 cut(s) | 966 |
| BlsI | GCNGC | 6 cut(s) | 215, 274, 544, 729, 922, 1350 |
| Bme1390I | CCNGG | 5 cut(s) | 123, 370, 479, 1344, 1345 |
| Bme18I | GGWCC | 1 cut(s) | 322 |
| BmeT110I | CYCGRG | 2 cut(s) | 1304, 1343 |
| BmgBI | CACGTC | 1 cut(s) | 1153 |
| BmgT120I | GGNCC | 3 cut(s) | 125, 322, 1209 |
| BmiI | GGNNCC | 3 cut(s) | 126, 324, 1301 |
| BmrFI | CCNGG | 5 cut(s) | 123, 370, 479, 1344, 1345 |
| BmrI | ACTGGG | 1 cut(s) | 321 |
| BmsI | GCATC | 2 cut(s) | 861, 1368 |
| BmuI | ACTGGG | 1 cut(s) | 321 |
| BpiI | GAAGAC | 2 cut(s) | 20, 1155 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 790, 822 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 966 |
| BpuEI | CTTGAG | 2 cut(s) | 734, 987 |
| BpuMI | CCSGG | 3 cut(s) | 123, 1344, 1345 |
| BsaBI | GATNNNNATC | 1 cut(s) | 50 |
| BsaI | GGTCTC | 2 cut(s) | 1215, 1430 |
| BsaJI | CCNNGG | 8 cut(s) | 122, 249, 270, 605, 715, 1133, 1343, 1440 |
| BsaWI | WCCGGW | 1 cut(s) | 1101 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 626, 656, 1324, 1354, 1442, 1472 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 146, 677, 698, 754, 907, 1322 |
| Bse118I | RCCGGY | 2 cut(s) | 376, 462 |
| Bse1I | ACTGG | 2 cut(s) | 327, 954 |
| Bse3DI | GCAATG | 4 cut(s) | 777, 966, 1056, 1365 |
| Bse8I | GATNNNNATC | 1 cut(s) | 50 |
| BseBI | CCWGG | 2 cut(s) | 370, 479 |
| BseDI | CCNNGG | 8 cut(s) | 122, 249, 270, 605, 715, 1133, 1343, 1440 |
| BseGI | GGATG | 3 cut(s) | 738, 832, 1371 |
| BseJI | GATNNNNATC | 1 cut(s) | 50 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 146, 677, 698, 754, 907, 1322 |
| BseMI | GCAATG | 4 cut(s) | 777, 966, 1056, 1365 |
| BseMII | CTCAG | 2 cut(s) | 957, 1425 |
| BseNI | ACTGG | 2 cut(s) | 327, 954 |
| BseRI | GAGGAG | 4 cut(s) | 622, 671, 1345, 1466 |
| BseSI | GKGCMC | 2 cut(s) | 929, 1189 |
| BseXI | GCAGC | 3 cut(s) | 529, 907, 1360 |
| BseYI | CCCAGC | 2 cut(s) | 662, 1381 |
| Bsh1236I | CGCG | 3 cut(s) | 216, 272, 574 |
| BshFI | GGCC | 8 cut(s) | 109, 127, 213, 237, 368, 1142, 1211, 1296 |
| BsiHKAI | GWGCWC | 3 cut(s) | 360, 486, 1189 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1304, 1343 |
| BsiSI | CCGG | 7 cut(s) | 122, 377, 463, 1102, 1259, 1297, 1344 |
| BsiWI | CGTACG | 1 cut(s) | 575 |
| BslFI | GGGAC | 6 cut(s) | 33, 308, 695, 1227, 1250, 1326 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 146, 677, 698, 754, 907, 1322 |
| BsmAI | GTCTC | 4 cut(s) | 608, 629, 1215, 1430 |
| BsmFI | GGGAC | 6 cut(s) | 33, 308, 695, 1227, 1250, 1326 |
| BsmI | GAATGC | 1 cut(s) | 720 |
| BsnI | GGCC | 8 cut(s) | 109, 127, 213, 237, 368, 1142, 1211, 1296 |
| Bso31I | GGTCTC | 2 cut(s) | 1215, 1430 |
| BsoBI | CYCGRG | 2 cut(s) | 1304, 1343 |
| Bsp1286I | GDGCHC | 5 cut(s) | 360, 486, 929, 1189, 1467 |
| Bsp143I | GATC | 3 cut(s) | 601, 1015, 1158 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 966 |
| Bsp19I | CCATGG | 1 cut(s) | 1440 |
| BspACI | CCGC | 9 cut(s) | 214, 270, 272, 727, 730, 923, 1164, 1326, 1363 |
| BspANI | GGCC | 8 cut(s) | 109, 127, 213, 237, 368, 1142, 1211, 1296 |
| BspCNI | CTCAG | 2 cut(s) | 958, 1426 |
| BspFNI | CGCG | 3 cut(s) | 216, 272, 574 |
| BspHI | TCATGA | 1 cut(s) | 808 |
| BspLI | GGNNCC | 3 cut(s) | 126, 324, 1301 |
| BspPI | GGATC | 2 cut(s) | 596, 1023 |
| BspQI | GCTCTTC | 1 cut(s) | 1002 |
| BspTNI | GGTCTC | 2 cut(s) | 1215, 1430 |
| BsrDI | GCAATG | 4 cut(s) | 777, 966, 1056, 1365 |
| BsrFI | RCCGGY | 2 cut(s) | 376, 462 |
| BsrI | ACTGG | 2 cut(s) | 327, 954 |
| BssAI | RCCGGY | 2 cut(s) | 376, 462 |
| BssECI | CCNNGG | 8 cut(s) | 122, 249, 270, 605, 715, 1133, 1343, 1440 |
| BssMI | GATC | 3 cut(s) | 601, 1015, 1158 |
| BssT1I | CCWWGG | 2 cut(s) | 715, 1440 |
| Bst2UI | CCWGG | 2 cut(s) | 370, 479 |
| Bst4CI | ACNGT | 4 cut(s) | 250, 322, 640, 1241 |
| Bst6I | CTCTTC | 1 cut(s) | 1002 |
| BstC8I | GCNNGC | 3 cut(s) | 343, 451, 925 |
| BstDEI | CTNAG | 5 cut(s) | 157, 192, 966, 1434, 1490 |
| BstDSI | CCRYGG | 3 cut(s) | 249, 270, 1440 |
| BstF5I | GGATG | 3 cut(s) | 738, 832, 1371 |
| BstFNI | CGCG | 3 cut(s) | 216, 272, 574 |
| BstH2I | RGCGCY | 1 cut(s) | 1121 |
| BstHHI | GCGC | 2 cut(s) | 784, 1120 |
| BstKTI | GATC | 3 cut(s) | 604, 1018, 1161 |
| BstMAI | GTCTC | 4 cut(s) | 608, 629, 1215, 1430 |
| BstMBI | GATC | 3 cut(s) | 601, 1015, 1158 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 338, 455 |
| BstNI | CCWGG | 2 cut(s) | 370, 479 |
| BstNSI | RCATGY | 1 cut(s) | 835 |
| BstSCI | CCNGG | 5 cut(s) | 121, 368, 477, 1342, 1343 |
| BstSLI | GKGCMC | 2 cut(s) | 929, 1189 |
| BstUI | CGCG | 3 cut(s) | 216, 272, 574 |
| BstV1I | GCAGC | 3 cut(s) | 529, 907, 1360 |
| BstV2I | GAAGAC | 2 cut(s) | 20, 1155 |
| BstX2I | RGATCY | 2 cut(s) | 601, 1158 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 209, 1447 |
| BstYI | RGATCY | 2 cut(s) | 601, 1158 |
| BsuI | GTATCC | 2 cut(s) | 366, 832 |
| BsuRI | GGCC | 8 cut(s) | 109, 127, 213, 237, 368, 1142, 1211, 1296 |
| BtgI | CCRYGG | 3 cut(s) | 249, 270, 1440 |
| BtrI | CACGTC | 1 cut(s) | 1153 |
| BtsCI | GGATG | 3 cut(s) | 738, 832, 1371 |
| BtsIMutI | CAGTG | 4 cut(s) | 334, 557, 862, 947 |
| Cac8I | GCNNGC | 3 cut(s) | 343, 451, 925 |
| CciI | TCATGA | 1 cut(s) | 808 |
| CfoI | GCGC | 2 cut(s) | 784, 1120 |
| Cfr10I | RCCGGY | 2 cut(s) | 376, 462 |
| Cfr13I | GGNCC | 3 cut(s) | 125, 322, 1209 |
| Cfr42I | CCGCGG | 1 cut(s) | 273 |
| Cfr9I | CCCGGG | 1 cut(s) | 1343 |
| CseI | GACGC | 1 cut(s) | 455 |
| Csp6I | GTAC | 5 cut(s) | 552, 576, 1168, 1175, 1430 |
| CviAII | CATG | 6 cut(s) | 349, 809, 832, 1206, 1441, 1447 |
| CviQI | GTAC | 5 cut(s) | 552, 576, 1168, 1175, 1430 |
| DdeI | CTNAG | 5 cut(s) | 157, 192, 966, 1434, 1490 |
| DpnI | GATC | 3 cut(s) | 603, 1017, 1160 |
| DpnII | GATC | 3 cut(s) | 601, 1015, 1158 |
| EaeI | YGGCCR | 2 cut(s) | 211, 235 |
| Eam1104I | CTCTTC | 1 cut(s) | 1002 |
| EarI | CTCTTC | 1 cut(s) | 1002 |
| EciI | GGCGGA | 1 cut(s) | 745 |
| Ecl136II | GAGCTC | 1 cut(s) | 484 |
| Eco130I | CCWWGG | 2 cut(s) | 715, 1440 |
| Eco147I | AGGCCT | 1 cut(s) | 109 |
| Eco24I | GRGCYC | 2 cut(s) | 486, 1467 |
| Eco31I | GGTCTC | 2 cut(s) | 1215, 1430 |
| Eco32I | GATATC | 1 cut(s) | 48 |
| Eco47I | GGWCC | 1 cut(s) | 322 |
| Eco53kI | GAGCTC | 1 cut(s) | 484 |
| Eco57I | CTGAAG | 1 cut(s) | 366 |
| Eco88I | CYCGRG | 2 cut(s) | 1304, 1343 |
| EcoICRI | GAGCTC | 1 cut(s) | 484 |
| EcoRII | CCWGG | 2 cut(s) | 368, 477 |
| EcoRV | GATATC | 1 cut(s) | 48 |
| EcoT14I | CCWWGG | 2 cut(s) | 715, 1440 |
| EcoT22I | ATGCAT | 1 cut(s) | 1207 |
| EcoT38I | GRGCYC | 2 cut(s) | 486, 1467 |
| ErhI | CCWWGG | 2 cut(s) | 715, 1440 |
| FaeI | CATG | 6 cut(s) | 352, 812, 835, 1209, 1444, 1450 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 659, 691 |
| FaqI | GGGAC | 6 cut(s) | 33, 308, 695, 1227, 1250, 1326 |
| FatI | CATG | 6 cut(s) | 348, 808, 831, 1205, 1440, 1446 |
| FauI | CCCGC | 3 cut(s) | 916, 1157, 1319 |
| Fnu4HI | GCNGC | 6 cut(s) | 214, 273, 543, 728, 921, 1349 |
| FokI | GGATG | 3 cut(s) | 745, 839, 1378 |
| FriOI | GRGCYC | 2 cut(s) | 486, 1467 |
| Fsp4HI | GCNGC | 6 cut(s) | 214, 273, 543, 728, 921, 1349 |
| FspBI | CTAG | 2 cut(s) | 1040, 1227 |
| FspI | TGCGCA | 1 cut(s) | 783 |
| GlaI | GCGC | 2 cut(s) | 783, 1119 |
| GluI | GCNGC | 6 cut(s) | 214, 273, 543, 728, 921, 1349 |
| GsaI | CCCAGC | 2 cut(s) | 666, 1385 |
| HaeII | RGCGCY | 1 cut(s) | 1121 |
| HaeIII | GGCC | 8 cut(s) | 109, 127, 213, 237, 368, 1142, 1211, 1296 |
| HapII | CCGG | 7 cut(s) | 122, 377, 463, 1102, 1259, 1297, 1344 |
| HgaI | GACGC | 1 cut(s) | 455 |
| HhaI | GCGC | 2 cut(s) | 784, 1120 |
| Hin1II | CATG | 6 cut(s) | 352, 812, 835, 1209, 1444, 1450 |
| Hin6I | GCGC | 2 cut(s) | 782, 1118 |
| HinP1I | GCGC | 2 cut(s) | 782, 1118 |
| HindIII | AAGCTT | 1 cut(s) | 1412 |
| HinfI | GANTC | 4 cut(s) | 762, 794, 1049, 1065 |
| HpaII | CCGG | 7 cut(s) | 122, 377, 463, 1102, 1259, 1297, 1344 |
| HphI | GGTGA | 1 cut(s) | 1459 |
| Hpy166II | GTNNAC | 2 cut(s) | 514, 1187 |
| Hpy188I | TCNGA | 4 cut(s) | 404, 606, 1137, 1279 |
| Hpy188III | TCNNGA | 5 cut(s) | 43, 443, 751, 809, 1004 |
| Hpy8I | GTNNAC | 2 cut(s) | 514, 1187 |
| Hpy99I | CGWCG | 1 cut(s) | 449 |
| HpyAV | CCTTC | 2 cut(s) | 1108, 1132 |
| HpyCH4III | ACNGT | 4 cut(s) | 250, 322, 640, 1241 |
| HpyCH4IV | ACGT | 1 cut(s) | 1152 |
| HpyCH4V | TGCA | 8 cut(s) | 90, 229, 312, 414, 503, 1108, 1187, 1205 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 338, 455 |
| HpyF3I | CTNAG | 5 cut(s) | 157, 192, 966, 1434, 1490 |
| HpySE526I | ACGT | 1 cut(s) | 1152 |
| Hsp92II | CATG | 6 cut(s) | 352, 812, 835, 1209, 1444, 1450 |
| HspAI | GCGC | 2 cut(s) | 782, 1118 |
| KspI | CCGCGG | 1 cut(s) | 273 |
| Kzo9I | GATC | 3 cut(s) | 601, 1015, 1158 |
| LguI | GCTCTTC | 1 cut(s) | 1002 |
| LmnI | GCTCC | 1 cut(s) | 481 |
| Lsp1109I | GCAGC | 3 cut(s) | 529, 907, 1360 |
| LweI | GCATC | 2 cut(s) | 861, 1368 |
| MaeI | CTAG | 2 cut(s) | 1040, 1227 |
| MaeII | ACGT | 1 cut(s) | 1152 |
| MaeIII | GTNAC | 5 cut(s) | 241, 817, 1122, 1368, 1386 |
| MalI | GATC | 3 cut(s) | 603, 1017, 1160 |
| MboI | GATC | 3 cut(s) | 601, 1015, 1158 |
| MboII | GAAGA | 9 cut(s) | 20, 31, 107, 252, 1019, 1058, 1157, 1160, 1430 |
| MfeI | CAATTG | 1 cut(s) | 422 |
| MflI | RGATCY | 2 cut(s) | 601, 1158 |
| MhlI | GDGCHC | 5 cut(s) | 360, 486, 929, 1189, 1467 |
| MluCI | AATT | 7 cut(s) | 64, 97, 302, 422, 562, 865, 1281 |
| MlyI | GAGTC | 2 cut(s) | 756, 1059 |
| MmeI | TCCRAC | 4 cut(s) | 633, 771, 816, 1257 |
| Mph1103I | ATGCAT | 1 cut(s) | 1207 |
| MseI | TTAA | 3 cut(s) | 630, 848, 1395 |
| MslI | CAYNNNNRTG | 3 cut(s) | 813, 952, 1445 |
| MspA1I | CMGCKG | 2 cut(s) | 272, 727 |
| MspI | CCGG | 7 cut(s) | 122, 377, 463, 1102, 1259, 1297, 1344 |
| MspR9I | CCNGG | 5 cut(s) | 123, 370, 479, 1344, 1345 |
| MunI | CAATTG | 1 cut(s) | 422 |
| Mva1269I | GAATGC | 1 cut(s) | 720 |
| MvaI | CCWGG | 2 cut(s) | 370, 479 |
| MvnI | CGCG | 3 cut(s) | 216, 272, 574 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 338, 455 |
| NciI | CCSGG | 3 cut(s) | 123, 1344, 1345 |
| NcoI | CCATGG | 1 cut(s) | 1440 |
| NdeII | GATC | 3 cut(s) | 601, 1015, 1158 |
| NlaIII | CATG | 6 cut(s) | 352, 812, 835, 1209, 1444, 1450 |
| NlaIV | GGNNCC | 3 cut(s) | 126, 324, 1301 |
| NmeAIII | GCCGAG | 1 cut(s) | 213 |
| NmuCI | GTSAC | 2 cut(s) | 817, 1386 |
| NsbI | TGCGCA | 1 cut(s) | 783 |
| NsiI | ATGCAT | 1 cut(s) | 1207 |
| NspI | RCATGY | 1 cut(s) | 835 |
| PaeR7I | CTCGAG | 1 cut(s) | 1304 |
| PagI | TCATGA | 1 cut(s) | 808 |
| PceI | AGGCCT | 1 cut(s) | 109 |
| PciI | ACATGT | 1 cut(s) | 831 |
| PciSI | GCTCTTC | 1 cut(s) | 1002 |
| PctI | GAATGC | 1 cut(s) | 720 |
| PfeI | GAWTC | 2 cut(s) | 794, 1049 |
| Pfl23II | CGTACG | 1 cut(s) | 575 |
| PflFI | GACNNNGTC | 1 cut(s) | 24 |
| PfoI | TCCNGGA | 1 cut(s) | 477 |
| PkrI | GCNGC | 6 cut(s) | 215, 274, 544, 729, 922, 1350 |
| PleI | GAGTC | 2 cut(s) | 756, 1059 |
| PpsI | GAGTC | 2 cut(s) | 756, 1059 |
| PscI | ACATGT | 1 cut(s) | 831 |
| Psp124BI | GAGCTC | 1 cut(s) | 486 |
| Psp6I | CCWGG | 2 cut(s) | 368, 477 |
| PspFI | CCCAGC | 2 cut(s) | 662, 1381 |
| PspGI | CCWGG | 2 cut(s) | 368, 477 |
| PspLI | CGTACG | 1 cut(s) | 575 |
| PspN4I | GGNNCC | 3 cut(s) | 126, 324, 1301 |
| PspPI | GGNCC | 3 cut(s) | 125, 322, 1209 |
| PspXI | VCTCGAGB | 1 cut(s) | 1304 |
| PsuI | RGATCY | 2 cut(s) | 601, 1158 |
| PsyI | GACNNNGTC | 1 cut(s) | 24 |
| RsaI | GTAC | 5 cut(s) | 553, 577, 1169, 1176, 1431 |
| RsaNI | GTAC | 5 cut(s) | 552, 576, 1168, 1175, 1430 |
| RseI | CAYNNNNRTG | 3 cut(s) | 813, 952, 1445 |
| SacI | GAGCTC | 1 cut(s) | 486 |
| SacII | CCGCGG | 1 cut(s) | 273 |
| SapI | GCTCTTC | 1 cut(s) | 1002 |
| SaqAI | TTAA | 3 cut(s) | 630, 848, 1395 |
| SatI | GCNGC | 6 cut(s) | 214, 273, 543, 728, 921, 1349 |
| Sau3AI | GATC | 3 cut(s) | 601, 1015, 1158 |
| Sau96I | GGNCC | 3 cut(s) | 125, 322, 1209 |
| SchI | GAGTC | 2 cut(s) | 756, 1059 |
| ScrFI | CCNGG | 5 cut(s) | 123, 370, 479, 1344, 1345 |
| SduI | GDGCHC | 5 cut(s) | 360, 486, 929, 1189, 1467 |
| SfaNI | GCATC | 2 cut(s) | 861, 1368 |
| Sfr274I | CTCGAG | 1 cut(s) | 1304 |
| Sfr303I | CCGCGG | 1 cut(s) | 273 |
| SgrBI | CCGCGG | 1 cut(s) | 273 |
| SinI | GGWCC | 1 cut(s) | 322 |
| SlaI | CTCGAG | 1 cut(s) | 1304 |
| SmaI | CCCGGG | 1 cut(s) | 1345 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 813, 952, 1445 |
| SmlI | CTYRAG | 3 cut(s) | 749, 1002, 1304 |
| SmoI | CTYRAG | 3 cut(s) | 749, 1002, 1304 |
| SpeI | ACTAGT | 1 cut(s) | 1039 |
| Sse9I | AATT | 7 cut(s) | 64, 97, 302, 422, 562, 865, 1281 |
| SseBI | AGGCCT | 1 cut(s) | 109 |
| SsiI | CCGC | 9 cut(s) | 214, 270, 272, 727, 730, 923, 1164, 1326, 1363 |
| SspMI | CTAG | 2 cut(s) | 1040, 1227 |
| SstI | GAGCTC | 1 cut(s) | 486 |
| StuI | AGGCCT | 1 cut(s) | 109 |
| StyD4I | CCNGG | 5 cut(s) | 121, 368, 477, 1342, 1343 |
| StyI | CCWWGG | 2 cut(s) | 715, 1440 |
| TaaI | ACNGT | 4 cut(s) | 250, 322, 640, 1241 |
| TaiI | ACGT | 1 cut(s) | 1155 |
| TaqI | TCGA | 7 cut(s) | 316, 337, 444, 768, 797, 995, 1305 |
| TasI | AATT | 7 cut(s) | 64, 97, 302, 422, 562, 865, 1281 |
| TauI | GCSGC | 3 cut(s) | 216, 275, 730 |
| TfiI | GAWTC | 2 cut(s) | 794, 1049 |
| Tru1I | TTAA | 3 cut(s) | 630, 848, 1395 |
| Tru9I | TTAA | 3 cut(s) | 630, 848, 1395 |
| TscAI | CASTG | 4 cut(s) | 334, 564, 862, 954 |
| TseFI | GTSAC | 2 cut(s) | 817, 1386 |
| TseI | GCWGC | 3 cut(s) | 542, 920, 1348 |
| Tsp45I | GTSAC | 2 cut(s) | 817, 1386 |
| TspDTI | ATGAA | 3 cut(s) | 57, 252, 930 |
| TspMI | CCCGGG | 1 cut(s) | 1343 |
| TspRI | CASTG | 4 cut(s) | 334, 564, 862, 954 |
| Tth111I | GACNNNGTC | 1 cut(s) | 24 |
| VneI | GTGCAC | 1 cut(s) | 1185 |
| VpaK11BI | GGWCC | 1 cut(s) | 322 |
| XapI | RAATTY | 1 cut(s) | 562 |
| XceI | RCATGY | 1 cut(s) | 835 |
| XhoI | CTCGAG | 1 cut(s) | 1304 |
| XmaI | CCCGGG | 1 cut(s) | 1343 |
| XspI | CTAG | 2 cut(s) | 1040, 1227 |
| Zsp2I | ATGCAT | 1 cut(s) | 1207 |