Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001495

Physical Location & Seq

Genomic Coordinates Reverse (-)

6945176 .. 6946532

Gene Structure 1357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGTACCGTAGCCAAGTCCTTAAAGCTTCTCTACCCCTCGCACATTTATTTCTACGAGTTGTAAGTTGCTGTGTACTTTGGGAGAAATCTGGTTTCTGTAGCAGATATAAAGTTGACATTGATTGCTTCTCATCTCTTTGCTTATTTCCTTCTAAACTACACCAACCAAAGGTTGAAGAGTTCACCATAAAAAAGGTTGAAGAGTTTCAAAGAAAAAGCTATCTACCCTCAAAAACCAAAATGGGTGCTTTGTTGAAGCTTGTAGATGCCACACTCATCGTCTTCTTCATCGTAATTGCGGTGGCAGCGCCCTTGCTCGACTCGCAGATAATTCTGCCTCGGTGCCTCTTCCCAGACTGGCTGGTTGAACTCCAGAGCTGGTTATACGTGCGCATCTTAGGCCATTATCTTGTGACCGAGAAACCTCATTTCTTTGTTGGCCTCGTTTGGCTGCAGCTACTCCTTCAGTGGCCTCTTGCGCTGGCCAACTTGTACGGAATTTTGGCCGCCAAGTCTTGGTTCAACACCACCTGCTTGATCTATGGAGTTTCTTTCTTCGGCTCCATCATTACTGAATTATCGGAGCTGGTTCAGTCCGGCAAGGCTTCTGATATGCTGGTATATTTTTACTTCCCTTTTCTGGGGTTAGCTGTTTTGGCCATTCTGCGGGGGCTTCTGCCACCATCCTGCAAGACTACTTCAACCATTGGCAAGAGACCGACATTGGGTAGGAAAAAGAAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2781

Protein Analysis

249

Amino Acids

28.12

Weight (kDa)

9.44

Isoelectric Point (pI)

46.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EBP	PF05241	130 - 220	7.5e-06	EXPERA (EXPanded EBP superfamily)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05210 AT2G32380
fragaria_vesca	FvH4_6g43330 FvH4_6g43370 FvH4_6g43380 FvH4_7g06210
malus_domestica	MD09G1107600.v1.1 MD17G1095200.v1.1 MD17G1095300.v1.1 MD17G1095500.v1.1 MD17G1095800.v1.1
prunus_persica	Prupe.3G218100_v2.0.a1 Prupe.3G218400_v2.0.a1 Prupe.3G218400_v2.0.a1
pyrus_communis	pycom09g02970 pycom17g09170 pycom17g09180 pycom17g09200 pycom17g09210
rosa_chinensis	RchiOBHm_Chr2g0159661 RchiOBHm_Chr2g0159681 RchiOBHm_Chr2g0159721
rosa_laevigata	RLG00000021171 RLG00000021173 RLG00000021174 RLG00000021176
rosa_multiflora	Rmu_sc0004966.1_g000004 Rmu_sc0011502.1_g000006 Rmu_sc0036321.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090280 Rroxscaffold_2G00090290 Rroxscaffold_2G00090310 Rroxscaffold_2G00090320 Rroxscaffold_2G00090340
rosa_rugosa	Rorug02G0477600 Rorug02G0477800 Rorug02G0478000
rosa_samantha	Rh2AG544500 Rh2AG544700 Rh2AG544800 Rh2BG557300 Rh2BG557600 Rh2CG527600 Rh2CG527800 Rh2CG527900 Rh2DG566400 Rh2DG566600 Rh2DG567100 Rh4CG047800
rosa_wichuraiana	Rw2G045030 Rw2G045050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	539
Acc16I	TGCGCA	1 cut(s)	392
Acc36I	ACCTGC	1 cut(s)	539
AccB1I	GGYRCC	1 cut(s)	342
AccB7I	CCANNNNNTGG	1 cut(s)	516
AciI	CCGC	3 cut(s)	299, 507, 667
AcoI	YGGCCR	3 cut(s)	483, 504, 657
AcsI	RAATTY	1 cut(s)	498
AcuI	CTGAAG	1 cut(s)	449
AfaI	GTAC	3 cut(s)	5, 75, 494
AfiI	CCNNNNNNNGG	6 cut(s)	169, 516, 640, 641, 666, 725
AgsI	TTSAA	7 cut(s)	176, 200, 209, 256, 368, 523, 702
AjuI	GAANNNNNNNTTGG	2 cut(s)	503, 535
AluBI	AGCT	7 cut(s)	26, 219, 259, 378, 457, 586, 650
AluI	AGCT	7 cut(s)	26, 219, 259, 378, 457, 586, 650
Alw26I	GTCTC	1 cut(s)	709
AoxI	GGCC	6 cut(s)	400, 439, 470, 483, 504, 657
ApeKI	GCWGC	3 cut(s)	305, 451, 454
ApoI	RAATTY	1 cut(s)	498
Asp700I	GAANNNNTTC	1 cut(s)	204
AspLEI	GCGC	3 cut(s)	310, 393, 481
AsuHPI	GGTGA	1 cut(s)	175
BalI	TGGCCA	2 cut(s)	485, 659
BanI	GGYRCC	1 cut(s)	342
BbsI	GAAGAC	1 cut(s)	274
BbvI	GCAGC	3 cut(s)	317, 438, 466
BccI	CCATC	2 cut(s)	572, 691
BcoDI	GTCTC	1 cut(s)	709
BfmI	CTRYAG	2 cut(s)	97, 452
BfoI	RGCGCY	1 cut(s)	311
BfuAI	ACCTGC	1 cut(s)	539
BisI	GCNGC	4 cut(s)	306, 452, 455, 507
BlsI	GCNGC	4 cut(s)	307, 453, 456, 508
BmiI	GGNNCC	2 cut(s)	344, 562
BmsI	GCATC	2 cut(s)	256, 402
BpiI	GAAGAC	1 cut(s)	274
BpmI	CTGGAG	1 cut(s)	356
BsaAI	YACGTR	1 cut(s)	388
BsaI	GGTCTC	1 cut(s)	709
BsaJI	CCNNGG	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	6 cut(s)	169, 516, 640, 641, 666, 725
Bse1I	ACTGG	1 cut(s)	362
BseDI	CCNNGG	1 cut(s)	338
BseGI	GGATG	1 cut(s)	683
BseLI	CCNNNNNNNGG	6 cut(s)	169, 516, 640, 641, 666, 725
BseNI	ACTGG	1 cut(s)	362
BseXI	GCAGC	3 cut(s)	317, 438, 466
BshFI	GGCC	6 cut(s)	402, 441, 472, 485, 506, 659
BshNI	GGYRCC	1 cut(s)	342
BsiSI	CCGG	1 cut(s)	597
BslI	CCNNNNNNNGG	6 cut(s)	169, 516, 640, 641, 666, 725
BsmAI	GTCTC	1 cut(s)	709
BsnI	GGCC	6 cut(s)	402, 441, 472, 485, 506, 659
Bso31I	GGTCTC	1 cut(s)	709
Bsp143I	GATC	1 cut(s)	537
BspACI	CCGC	3 cut(s)	299, 507, 667
BspANI	GGCC	6 cut(s)	402, 441, 472, 485, 506, 659
BspLI	GGNNCC	2 cut(s)	344, 562
BspMAI	CTGCAG	1 cut(s)	456
BspMI	ACCTGC	1 cut(s)	539
BspT107I	GGYRCC	1 cut(s)	342
BspTNI	GGTCTC	1 cut(s)	709
BsrI	ACTGG	1 cut(s)	362
BssECI	CCNNGG	1 cut(s)	338
BssMI	GATC	1 cut(s)	537
Bst4CI	ACNGT	1 cut(s)	8
Bst6I	CTCTTC	3 cut(s)	171, 195, 353
BstBAI	YACGTR	1 cut(s)	388
BstC8I	GCNNGC	1 cut(s)	483
BstDEI	CTNAG	1 cut(s)	397
BstF5I	GGATG	1 cut(s)	683
BstH2I	RGCGCY	1 cut(s)	311
BstHHI	GCGC	3 cut(s)	310, 393, 481
BstKTI	GATC	1 cut(s)	540
BstMAI	GTCTC	1 cut(s)	709
BstMBI	GATC	1 cut(s)	537
BstMWI	GCNNNNNNNGC	5 cut(s)	305, 322, 399, 478, 656
BstSFI	CTRYAG	2 cut(s)	97, 452
BstV1I	GCAGC	3 cut(s)	317, 438, 466
BstV2I	GAAGAC	1 cut(s)	274
BsuRI	GGCC	6 cut(s)	402, 441, 472, 485, 506, 659
BtsCI	GGATG	1 cut(s)	683
BtsIMutI	CAGTG	1 cut(s)	473
BveI	ACCTGC	1 cut(s)	539
Cac8I	GCNNGC	1 cut(s)	483
CfoI	GCGC	3 cut(s)	310, 393, 481
Csp6I	GTAC	3 cut(s)	4, 74, 493
CviQI	GTAC	3 cut(s)	4, 74, 493
DdeI	CTNAG	1 cut(s)	397
DpnI	GATC	1 cut(s)	539
DpnII	GATC	1 cut(s)	537
EaeI	YGGCCR	3 cut(s)	483, 504, 657
Eam1104I	CTCTTC	3 cut(s)	171, 195, 353
EarI	CTCTTC	3 cut(s)	171, 195, 353
Eco31I	GGTCTC	1 cut(s)	709
Eco57I	CTGAAG	1 cut(s)	449
FaiI	YATR	6 cut(s)	108, 188, 385, 543, 614, 622
FauI	CCCGC	1 cut(s)	660
Fnu4HI	GCNGC	4 cut(s)	306, 452, 455, 507
FokI	GGATG	1 cut(s)	670
Fsp4HI	GCNGC	4 cut(s)	306, 452, 455, 507
FspAI	RTGCGCAY	1 cut(s)	392
FspI	TGCGCA	1 cut(s)	392
GlaI	GCGC	3 cut(s)	309, 392, 480
GluI	GCNGC	4 cut(s)	306, 452, 455, 507
GsuI	CTGGAG	1 cut(s)	356
HaeII	RGCGCY	1 cut(s)	311
HaeIII	GGCC	6 cut(s)	402, 441, 472, 485, 506, 659
HapII	CCGG	1 cut(s)	597
HhaI	GCGC	3 cut(s)	310, 393, 481
Hin6I	GCGC	3 cut(s)	308, 391, 479
HinP1I	GCGC	3 cut(s)	308, 391, 479
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HindIII	AAGCTT	2 cut(s)	24, 257
HinfI	GANTC	1 cut(s)	320
HpaII	CCGG	1 cut(s)	597
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	3 cut(s)	74, 115, 183
Hpy188I	TCNGA	2 cut(s)	583, 610
Hpy188III	TCNNGA	1 cut(s)	373
Hpy8I	GTNNAC	3 cut(s)	74, 115, 183
HpyAV	CCTTC	3 cut(s)	159, 473, 733
HpyCH4III	ACNGT	1 cut(s)	8
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	2 cut(s)	454, 690
HpyF10VI	GCNNNNNNNGC	5 cut(s)	305, 322, 399, 478, 656
HpyF3I	CTNAG	1 cut(s)	397
HpySE526I	ACGT	1 cut(s)	387
HspAI	GCGC	3 cut(s)	308, 391, 479
Kzo9I	GATC	1 cut(s)	537
LmnI	GCTCC	2 cut(s)	566, 583
Lsp1109I	GCAGC	3 cut(s)	317, 438, 466
LweI	GCATC	2 cut(s)	256, 402
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	1 cut(s)	539
MboI	GATC	1 cut(s)	537
MboII	GAAGA	6 cut(s)	188, 212, 274, 277, 340, 547
MlsI	TGGCCA	2 cut(s)	485, 659
MluCI	AATT	4 cut(s)	294, 330, 498, 575
MluNI	TGGCCA	2 cut(s)	485, 659
MlyI	GAGTC	1 cut(s)	314
MnlI	CCTC	7 cut(s)	47, 238, 348, 356, 435, 452, 483
Mox20I	TGGCCA	2 cut(s)	485, 659
MroXI	GAANNNNTTC	1 cut(s)	204
MscI	TGGCCA	2 cut(s)	485, 659
MseI	TTAA	1 cut(s)	21
Msp20I	TGGCCA	2 cut(s)	485, 659
MspI	CCGG	1 cut(s)	597
MwoI	GCNNNNNNNGC	5 cut(s)	305, 322, 399, 478, 656
NdeII	GATC	1 cut(s)	537
NlaIV	GGNNCC	2 cut(s)	344, 562
NmuCI	GTSAC	1 cut(s)	412
NsbI	TGCGCA	1 cut(s)	392
PaqCI	CACCTGC	1 cut(s)	539
PdmI	GAANNNNTTC	1 cut(s)	204
PflMI	CCANNNNNTGG	1 cut(s)	516
PkrI	GCNGC	4 cut(s)	307, 453, 456, 508
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
Ppu21I	YACGTR	1 cut(s)	388
PspN4I	GGNNCC	2 cut(s)	344, 562
PstI	CTGCAG	1 cut(s)	456
RsaI	GTAC	3 cut(s)	5, 75, 494
RsaNI	GTAC	3 cut(s)	4, 74, 493
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	4 cut(s)	306, 452, 455, 507
Sau3AI	GATC	1 cut(s)	537
SchI	GAGTC	1 cut(s)	314
SfaNI	GCATC	2 cut(s)	256, 402
SfcI	CTRYAG	2 cut(s)	97, 452
Sse9I	AATT	4 cut(s)	294, 330, 498, 575
SsiI	CCGC	3 cut(s)	299, 507, 667
TaaI	ACNGT	1 cut(s)	8
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	1 cut(s)	318
TaqII	GACCGA	2 cut(s)	431, 733
TasI	AATT	4 cut(s)	294, 330, 498, 575
TatI	WGTACW	1 cut(s)	73
TauI	GCSGC	1 cut(s)	509
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TscAI	CASTG	1 cut(s)	473
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	3 cut(s)	305, 451, 454
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	1 cut(s)	277
TspGWI	ACGGA	1 cut(s)	510
TspRI	CASTG	1 cut(s)	473
Van91I	CCANNNNNTGG	1 cut(s)	516
XapI	RAATTY	1 cut(s)	498
XmnI	GAANNNNTTC	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.