Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0000770

Physical Location & Seq

Genomic Coordinates Forward (+)

8564867 .. 8566559

Gene Structure 1693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGTATTTATTACATGAGATTGCTGGCATTGTTCAAGAGGTTGGTCCAAATGTTCACGGCTTCAAAGTTGGTGATCATGTTGGAGTGGGAACTTTTGTTAATTCTTGTAGAGATTGCGACTATTGTAGAGATGGCCTAGAGATTTCCTGTGAAAAGGGAATAATTTTCACTTATAACCATGTTGATGCTGATGGCACGATTACAAAAGGAGGGTTTTCCAGTTACATTGTTGCTCATGAAAGGTACTGCTTCAAGATACCAGAGGGCTACCCCTTGGCTTCTGCAGCACCTCTGCTTTGTGCCGGCATTACTGTTTACTCTCCAATGATCCGCCATAAAATGAACCAGGACGGTAAATCACTAGGTGTGATTGGCCTTGGTGGTCTCGGACACTTGGCAGTGAAATTTGGGAAGGCTTTTGGACTAAACGTGACAGTTTTCAGCACAAGCTTATCAAAGAAGGAGGAAGCTCTAAGTCTGCTTGGTGCAGACAATTTCGTTGTCTCATCCAACCAAGAGAAAATGACGGCCCTGGCTAAGTCGCTTGACTTCATCATCGACACAGCATCTGGTGATCATCCATTTGATTTGTATATGTCTCTGCTGAAGACTGCTGGTGTTCTAGTCTTGGTTGGGGCACCAACCGAAGTTAAATTAAGTCCGGGGAGCTTGATTAGTGGTATGAAGTCAATTTCTGGTAGCGCAGCGGGAGGTACAAAACAGACGCAGGAAATGCTAGACTTTTGTGCTGCTCACAAAATATATCCAAACATAGAAATAGTTCCAATTCAGTATGTGAATGAAGCTCTTGAGAGGATCGATCAAGAGGGATGTGAAGTACCGTTTTGTTATAGATGTCGAAAACTCCCTAAAATGATGAGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

296

Amino Acids

31.83

Weight (kDa)

6.3

Isoelectric Point (pI)

29.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	3 - 88	5.9e-16	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	128 - 250	2.4e-18	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	161 - 275	6.5e-06	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72680
fragaria_vesca	FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323
malus_domestica	MD14G1142100.v1.1 MD17G1119700.v1.1 MD17G1119800.v1.1 MD17G1119900.v1.1
prunus_persica	Prupe.3G194000_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1
pyrus_communis	pycom14g11770 pycom17g11030 pycom17g11040 pycom17g11060
rosa_chinensis	RchiOBHm_Chr2g0142921 RchiOBHm_Chr2g0155511 RchiOBHm_Chr2g0155561 RchiOBHm_Chr7g0188021 RchiOBHm_Chr7g0188031
rosa_laevigata	RLG00000004732 RLG00000020842 RLG00000020844 RLG00000020845
rosa_multiflora	Rmu_co8454251.1_g000001 Rmu_sc0003439.1_g000010 Rmu_sc0003645.1_g000002 Rmu_sc0007929.1_g000001 Rmu_ssc0000422.1_g000013 Rmu_ssc0000422.1_g000015
rosa_roxburghii	Rroxscaffold_2G00093650 Rroxscaffold_3G00266800
rosa_rugosa	Rorug02G0376800 Rorug02G0376900 Rorug02G0447500 Rorug06G0487000 Rorug06G0487000 Rorug06G0487100 Rorug06G0487200 Rorug06G0487300 Rorug06G0487400 Rorug06G0487500
rosa_samantha	Rh2AG429700 Rh2BG438800 Rh2BG524800 Rh2BG525100 Rh2CG415100 Rh2CG499200 Rh2DG448900 Rh2DG533800 Rh7BG093400 Rh7CG092600 Rh7CG092800
rosa_wichuraiana	Rw2G035120 Rw2G042240 Rw2G042250 Rw7G007930 Rw7G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	174
AccB1I	GGYRCC	1 cut(s)	637
AciI	CCGC	2 cut(s)	331, 707
AclWI	GGATC	2 cut(s)	322, 824
AcsI	RAATTY	1 cut(s)	404
AcuI	CTGAAG	1 cut(s)	626
AdeI	CACNNNGTG	1 cut(s)	365
AfaI	GTAC	3 cut(s)	245, 715, 840
AgsI	TTSAA	3 cut(s)	35, 64, 253
AjnI	CCWGG	2 cut(s)	345, 531
AluBI	AGCT	4 cut(s)	450, 470, 669, 806
AluI	AGCT	4 cut(s)	450, 470, 669, 806
Alw26I	GTCTC	3 cut(s)	389, 508, 603
AlwI	GGATC	2 cut(s)	322, 824
AlwNI	CAGNNNCTG	1 cut(s)	569
AoxI	GGCC	3 cut(s)	133, 373, 528
ApeKI	GCWGC	3 cut(s)	284, 704, 749
ApoI	RAATTY	1 cut(s)	404
Asp700I	GAANNNNTTC	1 cut(s)	780
AspLEI	GCGC	1 cut(s)	704
AspS9I	GGNCC	2 cut(s)	44, 529
AsuC2I	CCSGG	1 cut(s)	663
AsuHPI	GGTGA	2 cut(s)	83, 584
AvaII	GGWCC	1 cut(s)	44
BaeGI	GKGCMC	1 cut(s)	640
BanI	GGYRCC	1 cut(s)	637
BbsI	GAAGAC	1 cut(s)	614
BbvI	GCAGC	3 cut(s)	296, 716, 736
BccI	CCATC	2 cut(s)	125, 185
BceAI	ACGGC	2 cut(s)	73, 543
BciT130I	CCWGG	2 cut(s)	347, 533
BclI	TGATCA	2 cut(s)	73, 574
BcnI	CCSGG	1 cut(s)	663
BcoDI	GTCTC	3 cut(s)	389, 508, 603
BfaI	CTAG	4 cut(s)	137, 362, 623, 737
BfmI	CTRYAG	1 cut(s)	282
BisI	GCNGC	3 cut(s)	285, 705, 750
BlsI	GCNGC	3 cut(s)	286, 706, 751
Bme1390I	CCNGG	3 cut(s)	347, 533, 663
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	2 cut(s)	44, 529
BmiI	GGNNCC	1 cut(s)	639
BmrFI	CCNGG	3 cut(s)	347, 533, 663
BmsI	GCATC	2 cut(s)	175, 575
BpiI	GAAGAC	1 cut(s)	614
BpuEI	CTTGAG	1 cut(s)	830
BpuMI	CCSGG	1 cut(s)	663
Bsa29I	ATCGAT	1 cut(s)	819
BsaI	GGTCTC	1 cut(s)	389
BsaJI	CCNNGG	4 cut(s)	273, 376, 531, 662
Bse118I	RCCGGY	1 cut(s)	302
Bse1I	ACTGG	1 cut(s)	219
BseBI	CCWGG	2 cut(s)	347, 533
BseCI	ATCGAT	1 cut(s)	819
BseDI	CCNNGG	4 cut(s)	273, 376, 531, 662
BseGI	GGATG	3 cut(s)	506, 577, 836
BseNI	ACTGG	1 cut(s)	219
BseSI	GKGCMC	1 cut(s)	640
BseXI	GCAGC	3 cut(s)	296, 716, 736
BsgI	GTGCAG	1 cut(s)	507
BshFI	GGCC	3 cut(s)	135, 375, 530
BshNI	GGYRCC	1 cut(s)	637
BshVI	ATCGAT	1 cut(s)	819
BsiSI	CCGG	2 cut(s)	303, 662
BsmAI	GTCTC	3 cut(s)	389, 508, 603
BsnI	GGCC	3 cut(s)	135, 375, 530
Bso31I	GGTCTC	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	640
Bsp143I	GATC	5 cut(s)	73, 327, 574, 816, 820
BspACI	CCGC	2 cut(s)	331, 707
BspANI	GGCC	3 cut(s)	135, 375, 530
BspDI	ATCGAT	1 cut(s)	819
BspHI	TCATGA	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	639
BspMAI	CTGCAG	1 cut(s)	286
BspPI	GGATC	2 cut(s)	322, 824
BspT107I	GGYRCC	1 cut(s)	637
BspTNI	GGTCTC	1 cut(s)	389
BsrFI	RCCGGY	1 cut(s)	302
BsrI	ACTGG	1 cut(s)	219
BssAI	RCCGGY	1 cut(s)	302
BssECI	CCNNGG	4 cut(s)	273, 376, 531, 662
BssMI	GATC	5 cut(s)	73, 327, 574, 816, 820
BssT1I	CCWWGG	2 cut(s)	273, 376
Bst2UI	CCWGG	2 cut(s)	347, 533
Bst4CI	ACNGT	4 cut(s)	313, 353, 436, 843
BstAPI	GCANNNNNTGC	1 cut(s)	733
BstC8I	GCNNGC	2 cut(s)	25, 304
BstDEI	CTNAG	2 cut(s)	473, 537
BstF5I	GGATG	3 cut(s)	506, 577, 836
BstHHI	GCGC	1 cut(s)	704
BstKTI	GATC	5 cut(s)	76, 330, 577, 819, 823
BstMAI	GTCTC	3 cut(s)	389, 508, 603
BstMBI	GATC	5 cut(s)	73, 327, 574, 816, 820
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 733
BstNI	CCWGG	2 cut(s)	347, 533
BstSCI	CCNGG	3 cut(s)	345, 531, 661
BstSFI	CTRYAG	1 cut(s)	282
BstSLI	GKGCMC	1 cut(s)	640
BstV1I	GCAGC	3 cut(s)	296, 716, 736
BstV2I	GAAGAC	1 cut(s)	614
Bsu15I	ATCGAT	1 cut(s)	819
BsuRI	GGCC	3 cut(s)	135, 375, 530
BsuTUI	ATCGAT	1 cut(s)	819
BtsCI	GGATG	3 cut(s)	506, 577, 836
BtsI	GCAGTG	1 cut(s)	405
BtsIMutI	CAGTG	1 cut(s)	405
Cac8I	GCNNGC	2 cut(s)	25, 304
CaiI	CAGNNNCTG	1 cut(s)	569
CciI	TCATGA	1 cut(s)	235
CfoI	GCGC	1 cut(s)	704
Cfr10I	RCCGGY	1 cut(s)	302
Cfr13I	GGNCC	2 cut(s)	44, 529
ClaI	ATCGAT	1 cut(s)	819
CseI	GACGC	1 cut(s)	733
Csp6I	GTAC	3 cut(s)	244, 714, 839
CviAII	CATG	4 cut(s)	14, 77, 179, 236
CviQI	GTAC	3 cut(s)	244, 714, 839
DdeI	CTNAG	2 cut(s)	473, 537
DpnI	GATC	5 cut(s)	75, 329, 576, 818, 822
DpnII	GATC	5 cut(s)	73, 327, 574, 816, 820
DraIII	CACNNNGTG	1 cut(s)	365
EciI	GGCGGA	1 cut(s)	320
Eco130I	CCWWGG	2 cut(s)	273, 376
Eco31I	GGTCTC	1 cut(s)	389
Eco47I	GGWCC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	626
EcoRII	CCWGG	2 cut(s)	345, 531
EcoT14I	CCWWGG	2 cut(s)	273, 376
ErhI	CCWWGG	2 cut(s)	273, 376
FaeI	CATG	4 cut(s)	17, 80, 182, 239
FatI	CATG	4 cut(s)	13, 76, 178, 235
FauI	CCCGC	1 cut(s)	700
FbaI	TGATCA	2 cut(s)	73, 574
Fnu4HI	GCNGC	3 cut(s)	285, 705, 750
FokI	GGATG	3 cut(s)	493, 564, 843
Fsp4HI	GCNGC	3 cut(s)	285, 705, 750
FspBI	CTAG	4 cut(s)	137, 362, 623, 737
GlaI	GCGC	1 cut(s)	703
GluI	GCNGC	3 cut(s)	285, 705, 750
HaeIII	GGCC	3 cut(s)	135, 375, 530
HapII	CCGG	2 cut(s)	303, 662
HgaI	GACGC	1 cut(s)	733
HhaI	GCGC	1 cut(s)	704
Hin1II	CATG	4 cut(s)	17, 80, 182, 239
Hin6I	GCGC	1 cut(s)	702
HinP1I	GCGC	1 cut(s)	702
HindIII	AAGCTT	1 cut(s)	448
HpaII	CCGG	2 cut(s)	303, 662
HphI	GGTGA	2 cut(s)	83, 584
Hpy166II	GTNNAC	2 cut(s)	55, 316
Hpy188I	TCNGA	1 cut(s)	389
Hpy188III	TCNNGA	5 cut(s)	35, 236, 253, 809, 824
Hpy8I	GTNNAC	2 cut(s)	55, 316
HpyAV	CCTTC	2 cut(s)	406, 454
HpyCH4III	ACNGT	4 cut(s)	313, 353, 436, 843
HpyCH4IV	ACGT	1 cut(s)	429
HpyCH4V	TGCA	2 cut(s)	284, 488
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 733
HpyF3I	CTNAG	2 cut(s)	473, 537
HpySE526I	ACGT	1 cut(s)	429
Hsp92II	CATG	4 cut(s)	17, 80, 182, 239
HspAI	GCGC	1 cut(s)	702
KroI	GCCGGC	1 cut(s)	302
KroNI	GCCGGC	1 cut(s)	304
Ksp22I	TGATCA	2 cut(s)	73, 574
Kzo9I	GATC	5 cut(s)	73, 327, 574, 816, 820
LmnI	GCTCC	1 cut(s)	666
Lsp1109I	GCAGC	3 cut(s)	296, 716, 736
LweI	GCATC	2 cut(s)	175, 575
MaeI	CTAG	4 cut(s)	137, 362, 623, 737
MaeII	ACGT	1 cut(s)	429
MaeIII	GTNAC	2 cut(s)	221, 430
MalI	GATC	5 cut(s)	75, 329, 576, 818, 822
MboI	GATC	5 cut(s)	73, 327, 574, 816, 820
MboII	GAAGA	1 cut(s)	619
MhlI	GDGCHC	1 cut(s)	640
MluCI	AATT	8 cut(s)	100, 162, 404, 493, 653, 690, 786, 883
MmeI	TCCRAC	2 cut(s)	61, 534
MnlI	CCTC	9 cut(s)	31, 203, 256, 300, 457, 704, 807, 820, 873
MroNI	GCCGGC	1 cut(s)	302
MroXI	GAANNNNTTC	1 cut(s)	780
MseI	TTAA	3 cut(s)	99, 651, 656
MslI	CAYNNNNRTG	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	707
MspI	CCGG	2 cut(s)	303, 662
MspR9I	CCNGG	3 cut(s)	347, 533, 663
MvaI	CCWGG	2 cut(s)	347, 533
MwoI	GCNNNNNNNGC	2 cut(s)	284, 733
NaeI	GCCGGC	1 cut(s)	304
NciI	CCSGG	1 cut(s)	663
NdeII	GATC	5 cut(s)	73, 327, 574, 816, 820
NgoMIV	GCCGGC	1 cut(s)	302
NlaIII	CATG	4 cut(s)	17, 80, 182, 239
NlaIV	GGNNCC	1 cut(s)	639
NmuCI	GTSAC	1 cut(s)	430
PagI	TCATGA	1 cut(s)	235
PdiI	GCCGGC	1 cut(s)	304
PdmI	GAANNNNTTC	1 cut(s)	780
PkrI	GCNGC	3 cut(s)	286, 706, 751
PsiI	TTATAA	1 cut(s)	174
Psp6I	CCWGG	2 cut(s)	345, 531
PspGI	CCWGG	2 cut(s)	345, 531
PspN4I	GGNNCC	1 cut(s)	639
PspPI	GGNCC	2 cut(s)	44, 529
PstI	CTGCAG	1 cut(s)	286
PstNI	CAGNNNCTG	1 cut(s)	569
RsaI	GTAC	3 cut(s)	245, 715, 840
RsaNI	GTAC	3 cut(s)	244, 714, 839
RseI	CAYNNNNRTG	1 cut(s)	183
SaqAI	TTAA	3 cut(s)	99, 651, 656
SatI	GCNGC	3 cut(s)	285, 705, 750
Sau3AI	GATC	5 cut(s)	73, 327, 574, 816, 820
Sau96I	GGNCC	2 cut(s)	44, 529
ScrFI	CCNGG	3 cut(s)	347, 533, 663
SduI	GDGCHC	1 cut(s)	640
SfaNI	GCATC	2 cut(s)	175, 575
SfcI	CTRYAG	1 cut(s)	282
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	183
SmlI	CTYRAG	1 cut(s)	809
SmoI	CTYRAG	1 cut(s)	809
Sse9I	AATT	8 cut(s)	100, 162, 404, 493, 653, 690, 786, 883
SsiI	CCGC	2 cut(s)	331, 707
SspMI	CTAG	4 cut(s)	137, 362, 623, 737
StyD4I	CCNGG	3 cut(s)	345, 531, 661
StyI	CCWWGG	2 cut(s)	273, 376
TaaI	ACNGT	4 cut(s)	313, 353, 436, 843
TaiI	ACGT	1 cut(s)	432
TaqI	TCGA	3 cut(s)	558, 819, 859
TasI	AATT	8 cut(s)	100, 162, 404, 493, 653, 690, 786, 883
Tru1I	TTAA	3 cut(s)	99, 651, 656
Tru9I	TTAA	3 cut(s)	99, 651, 656
TscAI	CASTG	1 cut(s)	405
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	3 cut(s)	284, 704, 749
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	5 cut(s)	252, 356, 541, 698, 816
TspRI	CASTG	1 cut(s)	405
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	1 cut(s)	404
XmnI	GAANNNNTTC	1 cut(s)	780
XspI	CTAG	4 cut(s)	137, 362, 623, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.