RchiOBHm_Chr2g0089671

Transcriptional corepressor LEUNIG-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000670
Physical Location & Seq
Forward (+)
3796799 .. 3803920
7122 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2598 bp
ATGGCTCAGGCCAATTGGGAAGCTGATAAAATGTTGGATGTGTATATATATGATTACCTTCTGAAGAGAAATTTACATGCTTCTGCAAAGGCATTTCAAGCTGAAGGAAAAGTTTCTACAGATCCTGTAGCTATTGATGCACCCGGTGGCTTTCTTTTCGAATGGTGGTCTGTCTTCTGGGACATATTCATCGCTAGGACGAATGAAAAGCACTCTGAAGCAGCTGCATCTTATATTGAGACTCAAGTGAACAAGGCTCGGGAGCTGCAACAGAAGCCTCAGCAGCATCCTCAAATGCAAATGCAGCATCTTTTGCAAAGGCATGCTGCTCAGCAGCAGCAGCAGCAGCATCAGCAACAACAACAACAACAACAACAACAACAACAACAACAACACCAGCAACAACAACAACACCCGCAACACCAGCAGCAGCAGCAGCAGCAGCAAAGACGAGATGGGACCCAACTTCTTAATGGAACTTCCAATGGGCTTGTTGGCACTGATCCTCTTTCGAGGCAGAACTCTGCAACTGCAAATGTCATGGCAACAAAAATGTACGAGGACAGATTAAAGCCTCCCATACAGAGGGATGCTTTGGATGATGCGGCTATGAAGCAAAGGTTAGGTGACAATATGAATCAGCTTATGGATTCAAATCGTGCATCATTGGTGAAAGTAGCCACAGCAGGTGGCCAGTCTCCCGGTCAAATGCTGCATGGTACACCTGGAGGTATGTTGGGGAATCTTCAACAAGCTCACAATCGGAGTCAGCAACTTCCTGGATTGATGCAGGACATAAAGAGTGAGATGATGAACCCCAGAGCTGCTGGGCCAGAAGGATCATTGATTGGTCTTCATGGATCAAATGAAGGCAGTAGCAATTTGACTCTGAAGGGGTGGCCTTTAACGGTTCGACCTGGAATTCTTCAGCAGCAAAATTCCATGATGCAGTCCTCTCAGCCCTTTAATCAGCTTCAGCTCCAGCAGCAACTTATACTTCAGGCACAACAAAATTTAGCTTCCCCATCTACCAATGACTTGGAAACTAGAAGGCTATCAATGCTCCTCAATAGAAATATACCTAACGTTGATGTACCTAACGTTGGATCGCCTGTTCAAGTGGGTTGCCCTGTAATGCCTGGTGCAGATGCAGATATGCTTATGAAGCAACAGCAGCTGCAAAGCAACAATCAACACCAACACCAACAACAGCAACAGTATTCACAGCATCCATTTTCAAGTCAACACCCTCAGAGTTCGAATCAACACATCCAGCAGCAAGAAAAGATCACTGGTGCTGGCAGCTTTACAGCTGGTGGTAGCATGTCTAACTCCTTTCAAGGCAATGATCAGGCTCCAAAGAATCAAATGGGGCGAAAGAGGAAGCAGCCAGTGTCATCTTCAGGTCCTGCCAATAGTTCAGGGACTGCTAATACCACTGGACCATCCCCCAGTTCACCTTCAACGCCTTCTACTCACACGGCAGGAGATGCGAACTCTGTGCCAACTTTGGCCCATAATAGCGGTTCATCGAAGTCTCTGCTTATGTTTGCTTCTGATGGTCTAGGCTCAGTTGCCTCGGTGCCAAATAAATTGAATGATATGGACCGATTTGTGGATGATGGATCTTTAGAGGATAATGTTGAATCATTCTTATCACATGATGATGCTGACCCTAGGGATAGAGTTGCTCGGTGTTCAGATGTCAGCAAAGGCTTCACTTTTTCGGAAGTTCGGGCTATTACTGCAAGTTCAAGTAAAGTCGAGTGCTGTCACTTCTCAGCAGATGGGAAAACACTCGCCACTGGTGGGCATGATCGAAAGGCTGTATTGTGGTCTACAGAGTCCTTCACTGTAAAGTCTACGCTTGAAGAGCATTCTCAGTGGATAACGGATGTTCGATTCAGTCCTAGTATGTCAAGGCTAGCTACATCTTCCGCTGACAAAACTGTCAGGGTCTGGGATGTTGATAATCCTGGCTATTCACTTCGTACTTTTATGGGACATTCTACAACTGTTATGTCACTAGACTTCCACCCTACTAAAGAGGATCTTCTGTGCTCTTGTGATAACAACAGTGAGATAAGATACTGGAGTATCAAGAATGGTAGTTGTATTGGAGTTTCCAAGGGTGGTGCAACTCAGATGAGGTTTCAACCTCGTCTTGGAAGGATGCTTGCTGCTGCAGGTGATACTCTTGTATCCATAATTGATGTAGAGACCGAAAGTTGCACGGTTAAATTACAGGGTCATAAGAACCTTGTCAATTCTGTGTGCTGGGATTCTTCTGGTGAGTATCTAGCCTCTGTGAGTGATGACTCGGTTAGAGTATGGGCAGTTGGCTCCAGTAGCAAAGGCGAATGCCTTTACGAGTTACCGTGTTCTGGCAACAAATTTCAGACATGCGTCTTCCATCCTACTTATCCATCATTGTTGGTTATCGGCTGTTATGAGACATTGGAACTTTGGAACATGAGCGAGAACAAGACAATGACCTTGCATGCACATGACAAGCTAGTATCTTCTTTGGCAGCGTCAAGTTCCACTGGCATGGTAGCTTCAGCTAGCCATGATAAGTTCGTGAAGTTATGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

865

Amino Acids

95.09

Weight (kDa)

6.58

Isoelectric Point (pI)

52.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LisH PF08513 10 - 36 2.5e-07 LisH
WD40_Gbeta PF25391 572 - 708 4.5e-12 G protein beta WD-40 repeat protein
Beta-prop_THOC3 PF25174 574 - 637 2.3e-09 THOC3 beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 574 - 778 8.8e-17 MABP1/WDR62 second WD40 domain
EIF3I PF24805 575 - 658 7.6e-07 EIF3I
Beta-prop_TEP1_2nd PF25047 575 - 699 1.7e-13 TEP-1 second beta-propeller
WD40_CDC20-Fz PF24807 576 - 778 5.6e-21 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd PF25172 578 - 779 1e-15 WDR3 second beta-propeller domain
WD40_WDHD1_1st PF24817 579 - 658 9.4e-12 WDHD1 first WD40 domain
Beta-prop_EML_2 PF23414 579 - 704 2.9e-19 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st PF25173 582 - 700 9.1e-23 WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 583 - 692 5.7e-08 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5 PF25175 583 - 707 3.7e-26 WDR5 beta-propeller domain
WD40_Prp19 PF24814 584 - 781 1.5e-32 Prp19 WD40 domain
Beta-prop_EML PF23409 586 - 705 5.2e-07 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 591 - 658 3e-07 CAF1B/HIR1 beta-propeller domain
Beta-prop_Aladin PF25460 598 - 781 3.5e-06 Aladin seven-bladed propeller
WDR55 PF24796 620 - 865 6.7e-13 WDR55
WD40 PF00400 620 - 655 3.3e-09 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 626 - 865 1.3e-38 THOC3 beta-propeller domain
Beta-prop_WDR90_POC16_2nd PF23393 637 - 746 2.8e-07 WDR90/POC16, second beta-propeller
EIF3I PF24805 667 - 864 3.3e-07 EIF3I
Beta-prop_WDR36-Utp21_2nd PF25168 686 - 784 3.7e-08 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 695 - 808 5.1e-12 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 712 - 864 9e-25 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 714 - 865 1.6e-14 WDHD1 first WD40 domain
WD40_Prp19 PF24814 715 - 864 1.3e-14 Prp19 WD40 domain
WD40_Gbeta PF25391 716 - 864 1.2e-06 G protein beta WD-40 repeat protein
WD40_CDC20-Fz PF24807 728 - 831 5.1e-06 CDC20/Fizzy WD40 domain
WD40 PF00400 743 - 778 8.4e-08 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000670)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32551 AT4G32551
fragaria_vesca FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940
malus_domestica MD02G1040200.v1.1 MD08G1139100.v1.1 MD15G1117100.v1.1 MD15G1145100.v1.1
prunus_persica Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1
pyrus_communis pycom02g03350 pycom08g11750 pycom15g10550 pycom15g16250
rosa_chinensis RchiOBHm_Chr2g0089671 RchiOBHm_Chr3g0465211 RchiOBHm_Chr6g0312941
rosa_laevigata RLG00000010283 RLG00000016050
rosa_multiflora Rmu_sc0000665.1_g000023 Rmu_sc0008049.1_g000043 Rmu_sc0008049.1_g000044
rosa_roxburghii Rroxscaffold_2G00151660 Rroxscaffold_7G00156310
rosa_rugosa Rorug02G0002500 Rorug02G0002500 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400800.1 Rorug06G0400900.1
rosa_samantha Rh2AG047900 Rh2BG046500 Rh2CG048500 Rh2DG047900 Rh6AG517700 Rh6BG529400 Rh6CG533900 Rh6DG520500
rosa_wichuraiana Rw2G004260 Rw5G017770 Rw6G045010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 677, 2177
AasI GACNNNNNNGTC 1 cut(s) 1949
Acc36I ACCTGC 2 cut(s) 677, 2177
AccB1I GGYRCC 1 cut(s) 1582
AccI GTMKAC 2 cut(s) 1838, 1862
AciI CCGC 4 cut(s) 416, 605, 1524, 1938
AclI AACGTT 2 cut(s) 1086, 1101
AclWI GGATC 7 cut(s) 116, 497, 847, 868, 1114, 1633, 2058
AcoI YGGCCR 1 cut(s) 691
AcsI RAATTY 5 cut(s) 70, 921, 937, 1012, 2393
AcuI CTGAAG 9 cut(s) 83, 123, 237, 911, 911, 959, 983, 1386, 2544
AdeI CACNNNGTG 1 cut(s) 146
AfaI GTAC 4 cut(s) 557, 721, 1095, 1993
AfiI CCNNNNNNNGG 6 cut(s) 585, 1103, 1615, 1809, 2165, 2384
AjnI CCWGG 5 cut(s) 724, 778, 916, 1138, 1975
AloI GAACNNNNNNTCC 2 cut(s) 1098, 1130
Alw21I GWGCWC 1 cut(s) 2063
Alw26I GTCTC 5 cut(s) 233, 702, 1542, 2213, 2447
AlwI GGATC 7 cut(s) 116, 497, 847, 868, 1114, 1633, 2058
AlwNI CAGNNNCTG 5 cut(s) 125, 1177, 1409, 1427, 1959
Ama87I CYCGRG 1 cut(s) 258
AoxI GGCC 5 cut(s) 9, 691, 830, 899, 1512
ApoI RAATTY 5 cut(s) 70, 921, 937, 1012, 2393
Asp700I GAANNNNTTC 1 cut(s) 112
AspA2I CCTAGG 1 cut(s) 1676
AspS9I GGNCC 6 cut(s) 459, 830, 1406, 1442, 1513, 1606
AsuC2I CCSGG 2 cut(s) 144, 702
AsuHPI GGTGA 5 cut(s) 638, 682, 1449, 2201, 2303
AsuII TTCGAA 2 cut(s) 159, 1259
AsuNHI GCTAGC 2 cut(s) 1924, 2564
AvaI CYCGRG 1 cut(s) 258
AvaII GGWCC 4 cut(s) 459, 1406, 1442, 1606
AvrII CCTAGG 1 cut(s) 1676
BaeI ACNNNNGTAYC 8 cut(s) 2080, 2080, 2113, 2113, 2184, 2184, 2217, 2217
BalI TGGCCA 1 cut(s) 693
BanI GGYRCC 1 cut(s) 1582
BbsI GAAGAC 3 cut(s) 166, 845, 2401
Bbv12I GWGCWC 1 cut(s) 2063
BbvCI CCTCAGC 1 cut(s) 279
BccI CCATC 8 cut(s) 449, 1033, 1453, 1553, 1616, 1781, 2421, 2434
BceAI ACGGC 1 cut(s) 1497
BcgI CGANNNNNNTGC 4 cut(s) 1483, 1517, 1522, 1556
BciT130I CCWGG 5 cut(s) 726, 780, 918, 1140, 1977
BciVI GTATCC 1 cut(s) 2212
BclI TGATCA 1 cut(s) 1348
BcnI CCSGG 2 cut(s) 144, 702
BcoDI GTCTC 5 cut(s) 233, 702, 1542, 2213, 2447
BfmI CTRYAG 4 cut(s) 117, 126, 1839, 2184
BfuAI ACCTGC 2 cut(s) 677, 2177
BfuI GTATCC 1 cut(s) 2212
BlnI CCTAGG 1 cut(s) 1676
BlpI GCTNAGC 1 cut(s) 330
Bme1390I CCNGG 7 cut(s) 144, 702, 726, 780, 918, 1140, 1977
Bme18I GGWCC 4 cut(s) 459, 1406, 1442, 1606
BmeT110I CYCGRG 1 cut(s) 258
BmgT120I GGNCC 6 cut(s) 459, 830, 1406, 1442, 1513, 1606
BmiI GGNNCC 5 cut(s) 460, 461, 1356, 1584, 2344
BmrFI CCNGG 7 cut(s) 144, 702, 726, 780, 918, 1140, 1977
BmrI ACTGGG 1 cut(s) 1446
BmtI GCTAGC 2 cut(s) 1928, 2568
BmuI ACTGGG 1 cut(s) 1446
BoxI GACNNNNGTC 1 cut(s) 2405
BpiI GAAGAC 3 cut(s) 166, 845, 2401
BpmI CTGGAG 4 cut(s) 747, 965, 2113, 2329
Bpu10I CCTNAGC 2 cut(s) 6, 279
Bpu1102I GCTNAGC 1 cut(s) 330
Bpu14I TTCGAA 2 cut(s) 159, 1259
BpuEI CTTGAG 1 cut(s) 228
BpuMI CCSGG 2 cut(s) 144, 702
BsaBI GATNNNNATC 1 cut(s) 654
BsaI GGTCTC 1 cut(s) 2213
BsaJI CCNNGG 3 cut(s) 1578, 1676, 2127
Bsc4I CCNNNNNNNGG 6 cut(s) 585, 1103, 1615, 1809, 2165, 2384
Bse1I ACTGG 9 cut(s) 694, 1297, 1391, 1444, 1452, 1810, 2096, 2346, 2551
Bse3DI GCAATG 1 cut(s) 1351
Bse8I GATNNNNATC 1 cut(s) 654
BseBI CCWGG 5 cut(s) 726, 780, 918, 1140, 1977
BseDI CCNNGG 3 cut(s) 1578, 1676, 2127
BseJI GATNNNNATC 1 cut(s) 654
BseLI CCNNNNNNNGG 6 cut(s) 585, 1103, 1615, 1809, 2165, 2384
BseMI GCAATG 1 cut(s) 1351
BseMII CTCAG 9 cut(s) 20, 293, 344, 971, 1265, 1584, 1794, 1895, 2156
BseNI ACTGG 9 cut(s) 694, 1297, 1391, 1444, 1452, 1810, 2096, 2346, 2551
BseRI GAGGAG 1 cut(s) 1055
BseYI CCCAGC 2 cut(s) 827, 2277
BsgI GTGCAG 1 cut(s) 1164
BshFI GGCC 5 cut(s) 11, 693, 832, 901, 1514
BshNI GGYRCC 1 cut(s) 1582
BsiHKAI GWGCWC 1 cut(s) 2063
BsiHKCI CYCGRG 1 cut(s) 258
BsiSI CCGG 2 cut(s) 144, 702
BslFI GGGAC 4 cut(s) 194, 472, 1438, 2016
BslI CCNNNNNNNGG 6 cut(s) 585, 1103, 1615, 1809, 2165, 2384
BsmAI GTCTC 5 cut(s) 233, 702, 1542, 2213, 2447
BsmFI GGGAC 4 cut(s) 194, 472, 1438, 2016
BsmI GAATGC 2 cut(s) 1876, 2366
BsnI GGCC 5 cut(s) 11, 693, 832, 901, 1514
Bso31I GGTCTC 1 cut(s) 2213
BsoBI CYCGRG 1 cut(s) 258
Bsp119I TTCGAA 2 cut(s) 159, 1259
Bsp1286I GDGCHC 1 cut(s) 2063
Bsp1720I GCTNAGC 1 cut(s) 330
BspACI CCGC 4 cut(s) 416, 605, 1524, 1938
BspANI GGCC 5 cut(s) 11, 693, 832, 901, 1514
BspCNI CTCAG 9 cut(s) 19, 292, 343, 970, 1264, 1583, 1793, 1894, 2155
BspLI GGNNCC 5 cut(s) 460, 461, 1356, 1584, 2344
BspMAI CTGCAG 1 cut(s) 2188
BspMI ACCTGC 2 cut(s) 677, 2177
BspOI GCTAGC 2 cut(s) 1928, 2568
BspPI GGATC 7 cut(s) 116, 497, 847, 868, 1114, 1633, 2058
BspQI GCTCTTC 1 cut(s) 1866
BspT104I TTCGAA 2 cut(s) 159, 1259
BspT107I GGYRCC 1 cut(s) 1582
BspTNI GGTCTC 1 cut(s) 2213
BsrDI GCAATG 1 cut(s) 1351
BsrI ACTGG 9 cut(s) 694, 1297, 1391, 1444, 1452, 1810, 2096, 2346, 2551
BssECI CCNNGG 3 cut(s) 1578, 1676, 2127
BssT1I CCWWGG 2 cut(s) 1676, 2127
Bst2UI CCWGG 5 cut(s) 726, 780, 918, 1140, 1977
Bst4CI ACNGT 8 cut(s) 910, 1218, 1855, 1951, 2017, 2078, 2236, 2379
Bst6I CTCTTC 2 cut(s) 59, 1866
BstAPI GCANNNNNTGC 2 cut(s) 313, 1490
BstBI TTCGAA 2 cut(s) 159, 1259
BstC8I GCNNGC 6 cut(s) 324, 1300, 1926, 2178, 2502, 2566
BstDEI CTNAG 9 cut(s) 6, 279, 330, 957, 1251, 1570, 1780, 1881, 2142
BstMAI GTCTC 5 cut(s) 233, 702, 1542, 2213, 2447
BstNI CCWGG 5 cut(s) 726, 780, 918, 1140, 1977
BstNSI RCATGY 5 cut(s) 80, 326, 1327, 2406, 2504
BstPAI GACNNNNGTC 1 cut(s) 2405
BstSCI CCNGG 7 cut(s) 142, 700, 724, 778, 916, 1138, 1975
BstSFI CTRYAG 4 cut(s) 117, 126, 1839, 2184
BstV2I GAAGAC 3 cut(s) 166, 845, 2401
BstX2I RGATCY 3 cut(s) 121, 1625, 2050
BstXI CCANNNNNNTGG 2 cut(s) 1039, 2551
BstYI RGATCY 3 cut(s) 121, 1625, 2050
BsuI GTATCC 1 cut(s) 2212
BsuRI GGCC 5 cut(s) 11, 693, 832, 901, 1514
BtgZI GCGATG 1 cut(s) 175
BtsIMutI CAGTG 9 cut(s) 498, 1290, 1398, 1437, 1803, 1851, 1889, 2083, 2544
BveI ACCTGC 2 cut(s) 677, 2177
Cac8I GCNNGC 6 cut(s) 324, 1300, 1926, 2178, 2502, 2566
CaiI CAGNNNCTG 5 cut(s) 125, 1177, 1409, 1427, 1959
Cfr13I GGNCC 6 cut(s) 459, 830, 1406, 1442, 1513, 1606
CseI GACGC 2 cut(s) 2395, 2523
Csp6I GTAC 4 cut(s) 556, 720, 1094, 1992
CviQI GTAC 4 cut(s) 556, 720, 1094, 1992
DdeI CTNAG 9 cut(s) 6, 279, 330, 957, 1251, 1570, 1780, 1881, 2142
DraIII CACNNNGTG 1 cut(s) 146
DrdI GACNNNNNNGTC 1 cut(s) 1949
DseDI GACNNNNNNGTC 1 cut(s) 1949
EaeI YGGCCR 1 cut(s) 691
Eam1104I CTCTTC 2 cut(s) 59, 1866
EarI CTCTTC 2 cut(s) 59, 1866
Eco130I CCWWGG 2 cut(s) 1676, 2127
Eco31I GGTCTC 1 cut(s) 2213
Eco47I GGWCC 4 cut(s) 459, 1406, 1442, 1606
Eco57I CTGAAG 9 cut(s) 83, 123, 237, 911, 911, 959, 983, 1386, 2544
Eco88I CYCGRG 1 cut(s) 258
EcoO109I RGGNCCY 2 cut(s) 459, 1406
EcoRI GAATTC 1 cut(s) 921
EcoRII CCWGG 5 cut(s) 724, 778, 916, 1138, 1975
EcoT14I CCWWGG 2 cut(s) 1676, 2127
ErhI CCWWGG 2 cut(s) 1676, 2127
FalI AAGNNNNNCTT 2 cut(s) 2037, 2069
FaqI GGGAC 4 cut(s) 194, 472, 1438, 2016
FauI CCCGC 1 cut(s) 423
FbaI TGATCA 1 cut(s) 1348
FblI GTMKAC 2 cut(s) 1838, 1862
GsaI CCCAGC 2 cut(s) 831, 2281
GsuI CTGGAG 4 cut(s) 747, 965, 2113, 2329
HaeIII GGCC 5 cut(s) 11, 693, 832, 901, 1514
HapII CCGG 2 cut(s) 144, 702
HgaI GACGC 2 cut(s) 2395, 2523
HincII GTYRAC 1 cut(s) 1244
HindII GTYRAC 1 cut(s) 1244
HpaII CCGG 2 cut(s) 144, 702
HphI GGTGA 5 cut(s) 638, 682, 1449, 2201, 2303
Hpy166II GTNNAC 6 cut(s) 250, 722, 1244, 1457, 1839, 1863
Hpy188III TCNNGA 3 cut(s) 260, 2101, 2581
Hpy8I GTNNAC 6 cut(s) 250, 722, 1244, 1457, 1839, 1863
HpyCH4III ACNGT 8 cut(s) 910, 1218, 1855, 1951, 2017, 2078, 2236, 2379
HpyCH4IV ACGT 2 cut(s) 1086, 1101
HpyF3I CTNAG 9 cut(s) 6, 279, 330, 957, 1251, 1570, 1780, 1881, 2142
HpySE526I ACGT 2 cut(s) 1086, 1101
KflI GGGWCCC 1 cut(s) 459
Ksp22I TGATCA 1 cut(s) 1348
LguI GCTCTTC 1 cut(s) 1866
LmnI GCTCC 5 cut(s) 262, 984, 1068, 1360, 2348
MaeII ACGT 2 cut(s) 1086, 1101
MaeIII GTNAC 4 cut(s) 626, 1772, 2022, 2373
MfeI CAATTG 1 cut(s) 13
MflI RGATCY 3 cut(s) 121, 1625, 2050
MhlI GDGCHC 1 cut(s) 2063
MlsI TGGCCA 1 cut(s) 693
MluNI TGGCCA 1 cut(s) 693
MlyI GAGTC 5 cut(s) 235, 775, 880, 1853, 2312
MmeI TCCRAC 2 cut(s) 15, 1084
Mox20I TGGCCA 1 cut(s) 693
MroXI GAANNNNTTC 1 cut(s) 112
MscI TGGCCA 1 cut(s) 693
MseI TTAA 5 cut(s) 471, 569, 905, 966, 2238
MslI CAYNNNNRTG 3 cut(s) 1665, 2505, 2549
Msp20I TGGCCA 1 cut(s) 693
MspA1I CMGCKG 4 cut(s) 224, 1177, 1313, 1940
MspI CCGG 2 cut(s) 144, 702
MspR9I CCNGG 7 cut(s) 144, 702, 726, 780, 918, 1140, 1977
MunI CAATTG 1 cut(s) 13
Mva1269I GAATGC 2 cut(s) 1876, 2366
MvaI CCWGG 5 cut(s) 726, 780, 918, 1140, 1977
NciI CCSGG 2 cut(s) 144, 702
NheI GCTAGC 2 cut(s) 1924, 2564
NlaIV GGNNCC 5 cut(s) 460, 461, 1356, 1584, 2344
NmuCI GTSAC 3 cut(s) 626, 1772, 2022
NspI RCATGY 5 cut(s) 80, 326, 1327, 2406, 2504
NspV TTCGAA 2 cut(s) 159, 1259
PaeI GCATGC 2 cut(s) 326, 2504
PaqCI CACCTGC 2 cut(s) 677, 2177
PciSI GCTCTTC 1 cut(s) 1866
PctI GAATGC 2 cut(s) 1876, 2366
PdmI GAANNNNTTC 1 cut(s) 112
PfeI GAWTC 8 cut(s) 637, 650, 742, 1261, 1363, 1646, 1902, 2282
PfoI TCCNGGA 1 cut(s) 778
PleI GAGTC 5 cut(s) 235, 774, 880, 1852, 2312
PpsI GAGTC 5 cut(s) 235, 774, 880, 1852, 2312
PpuMI RGGWCCY 2 cut(s) 459, 1406
PshAI GACNNNNGTC 1 cut(s) 2405
Psp1406I AACGTT 2 cut(s) 1086, 1101
Psp5II RGGWCCY 2 cut(s) 459, 1406
Psp6I CCWGG 5 cut(s) 724, 778, 916, 1138, 1975
PspFI CCCAGC 2 cut(s) 827, 2277
PspGI CCWGG 5 cut(s) 724, 778, 916, 1138, 1975
PspN4I GGNNCC 5 cut(s) 460, 461, 1356, 1584, 2344
PspPI GGNCC 6 cut(s) 459, 830, 1406, 1442, 1513, 1606
PspPPI RGGWCCY 2 cut(s) 459, 1406
PstI CTGCAG 1 cut(s) 2188
PstNI CAGNNNCTG 5 cut(s) 125, 1177, 1409, 1427, 1959
PsuI RGATCY 3 cut(s) 121, 1625, 2050
PvuII CAGCTG 3 cut(s) 224, 1177, 1313
RsaI GTAC 4 cut(s) 557, 721, 1095, 1993
RsaNI GTAC 4 cut(s) 556, 720, 1094, 1992
RseI CAYNNNNRTG 3 cut(s) 1665, 2505, 2549
SapI GCTCTTC 1 cut(s) 1866
SaqAI TTAA 5 cut(s) 471, 569, 905, 966, 2238
Sau96I GGNCC 6 cut(s) 459, 830, 1406, 1442, 1513, 1606
SchI GAGTC 5 cut(s) 235, 775, 880, 1853, 2312
ScrFI CCNGG 7 cut(s) 144, 702, 726, 780, 918, 1140, 1977
SduI GDGCHC 1 cut(s) 2063
SfcI CTRYAG 4 cut(s) 117, 126, 1839, 2184
SfuI TTCGAA 2 cut(s) 159, 1259
SinI GGWCC 4 cut(s) 459, 1406, 1442, 1606
SmiMI CAYNNNNRTG 3 cut(s) 1665, 2505, 2549
SmlI CTYRAG 1 cut(s) 243
SmoI CTYRAG 1 cut(s) 243
SphI GCATGC 2 cut(s) 326, 2504
SsiI CCGC 4 cut(s) 416, 605, 1524, 1938
StyD4I CCNGG 7 cut(s) 142, 700, 724, 778, 916, 1138, 1975
StyI CCWWGG 2 cut(s) 1676, 2127
TaaI ACNGT 8 cut(s) 910, 1218, 1855, 1951, 2017, 2078, 2236, 2379
TaiI ACGT 2 cut(s) 1089, 1104
TaqI TCGA 8 cut(s) 159, 512, 913, 1259, 1532, 1764, 1819, 1900
TaqII GACCGA 2 cut(s) 1623, 2237
TauI GCSGC 1 cut(s) 608
TfiI GAWTC 8 cut(s) 637, 650, 742, 1261, 1363, 1646, 1902, 2282
Tru1I TTAA 5 cut(s) 471, 569, 905, 966, 2238
Tru9I TTAA 5 cut(s) 471, 569, 905, 966, 2238
TscAI CASTG 9 cut(s) 505, 1297, 1398, 1444, 1810, 1858, 1889, 2083, 2551
TseFI GTSAC 3 cut(s) 626, 1772, 2022
Tsp45I GTSAC 3 cut(s) 626, 1772, 2022
TspDTI ATGAA 9 cut(s) 178, 219, 626, 650, 827, 845, 882, 1178, 1518
TspGWI ACGGA 1 cut(s) 1907
TspRI CASTG 9 cut(s) 505, 1297, 1398, 1444, 1810, 1858, 1889, 2083, 2551
VpaK11BI GGWCC 4 cut(s) 459, 1406, 1442, 1606
XapI RAATTY 5 cut(s) 70, 921, 937, 1012, 2393
XceI RCATGY 5 cut(s) 80, 326, 1327, 2406, 2504
XcmI CCANNNNNNNNNTGG 1 cut(s) 470
XmaJI CCTAGG 1 cut(s) 1676
XmiI GTMKAC 2 cut(s) 1838, 1862
XmnI GAANNNNTTC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.