Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002555

Physical Location & Seq

Genomic Coordinates Reverse (-)

10290182 .. 10292794

Gene Structure 2613 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAATCTTCCTTTTGGTTTAATGGATGAGCTTGTTCATGATCTGGTGGCTAGTGCTTTTGCATTCTCTCTTGGACTCGGCTATGGAAACATTAAGAATGCTCAGGGTCTTCAAGTGTTTAGGTTTGTGGAACAACCTGACAGCAATGAGAAAATTCTGGATCAAAAGACCAAAGTCAAGTTCCAAATTATGAGTCTGAAGGTCAAAGCTGAAATAGACTATGCTCCTGAGCTGGTAAATATACTGCTCTTCCCTCTTTATGCTCTCTGTGGCTTGTTAAGTGTTATGTGGATACACTTTTGGGAAATTGGAGTGCCAATTTCCAATTGGTTTTTGATGAGCAAAAGGATCAAAGTAGCAGTTGAGCGAATTTTGCGGATTGTATTTTTAGATGCAGAGCACCCTACTCCTGCTCATGTTGGAGAAGGCCTTGTAATTGATGAATGGGTGTTGAAAACTGTAGGTGTTGTGGATGTGAAGCAAGTAGATTTCAATGGCCTTGATAAGGCTCCAACGGCCTTGATTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0016020 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

176

Amino Acids

19.83

Weight (kDa)

5.53

Isoelectric Point (pI)

30.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097701 RchiOBHm_Chr6g0292791
rosa_laevigata	RLG00000015275 RLG00000021547 RLG00000030592
rosa_roxburghii	Rroxscaffold_1G00036680 Rroxscaffold_1G00041910 Rroxscaffold_4G00298950
rosa_samantha	Rh1BG038600 Rh1BG413300 Rh1CG442700 Rh1DG446300 Rh2AG239900 Rh2AG454600 Rh2BG458800 Rh2CG329000 Rh2CG441700 Rh2DG247800 Rh3AG319400 Rh3DG074200 Rh3DG253400 Rh4AG134000 Rh4CG324700 Rh4DG018300 Rh5BG409600 Rh5CG361100 Rh5CG434400 Rh5DG243200 Rh6AG347300 Rh6CG028700 Rh6CG148300 Rh6CG361100 Rh6DG027800 Rh7AG187400 Rh7BG242700
rosa_wichuraiana	Rw0G008450 Rw2G012270 Rw4G030630 Rw5G021380 Rw5G046710 Rw6G001850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	376
AclWI	GGATC	2 cut(s)	168, 356
AcsI	RAATTY	2 cut(s)	153, 369
AcuI	CTGAAG	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	505
AgsI	TTSAA	3 cut(s)	113, 454, 493
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AluBI	AGCT	3 cut(s)	31, 209, 232
AluI	AGCT	3 cut(s)	31, 209, 232
Alw21I	GWGCWC	1 cut(s)	402
AlwI	GGATC	2 cut(s)	168, 356
AoxI	GGCC	3 cut(s)	427, 496, 516
ApoI	RAATTY	2 cut(s)	153, 369
ArsI	GACNNNNNNTTYG	2 cut(s)	178, 210
BbsI	GAAGAC	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	402
BciVI	GTATCC	1 cut(s)	285
BfaI	CTAG	1 cut(s)	51
BfmI	CTRYAG	1 cut(s)	459
BfuI	GTATCC	1 cut(s)	285
BmiI	GGNNCC	1 cut(s)	510
BmsI	GCATC	1 cut(s)	382
BoxI	GACNNNNGTC	1 cut(s)	173
BpiI	GAAGAC	1 cut(s)	101
Bpu10I	CCTNAGC	2 cut(s)	102, 228
Bsc4I	CCNNNNNNNGG	1 cut(s)	505
Bse3DI	GCAATG	1 cut(s)	151
BseGI	GGATG	2 cut(s)	31, 478
BseLI	CCNNNNNNNGG	1 cut(s)	505
BseMI	GCAATG	1 cut(s)	151
BseMII	CTCAG	2 cut(s)	116, 219
BshFI	GGCC	3 cut(s)	429, 498, 518
BsiHKAI	GWGCWC	1 cut(s)	402
BslI	CCNNNNNNNGG	1 cut(s)	505
BsmI	GAATGC	2 cut(s)	62, 103
BsnI	GGCC	3 cut(s)	429, 498, 518
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp143I	GATC	3 cut(s)	40, 160, 348
BspACI	CCGC	1 cut(s)	376
BspANI	GGCC	3 cut(s)	429, 498, 518
BspCNI	CTCAG	2 cut(s)	115, 220
BspHI	TCATGA	1 cut(s)	37
BspLI	GGNNCC	1 cut(s)	510
BspPI	GGATC	2 cut(s)	168, 356
BspQI	GCTCTTC	1 cut(s)	254
BsrDI	GCAATG	1 cut(s)	151
BssMI	GATC	3 cut(s)	40, 160, 348
Bst4CI	ACNGT	1 cut(s)	460
Bst6I	CTCTTC	1 cut(s)	254
BstDEI	CTNAG	2 cut(s)	102, 228
BstENI	CCTNNNNNAGG	1 cut(s)	503
BstF5I	GGATG	2 cut(s)	31, 478
BstKTI	GATC	3 cut(s)	43, 163, 351
BstMBI	GATC	3 cut(s)	40, 160, 348
BstMWI	GCNNNNNNNGC	2 cut(s)	373, 515
BstPAI	GACNNNNGTC	1 cut(s)	173
BstSFI	CTRYAG	1 cut(s)	459
BstV2I	GAAGAC	1 cut(s)	101
BsuI	GTATCC	1 cut(s)	285
BsuRI	GGCC	3 cut(s)	429, 498, 518
BtsCI	GGATG	2 cut(s)	31, 478
CciI	TCATGA	1 cut(s)	37
CviAII	CATG	2 cut(s)	38, 416
DdeI	CTNAG	2 cut(s)	102, 228
DpnI	GATC	3 cut(s)	42, 162, 350
DpnII	GATC	3 cut(s)	40, 160, 348
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
Eco147I	AGGCCT	1 cut(s)	429
Eco57I	CTGAAG	1 cut(s)	218
EcoNI	CCTNNNNNAGG	1 cut(s)	503
FaeI	CATG	2 cut(s)	41, 419
FaiI	YATR	8 cut(s)	39, 84, 191, 222, 242, 261, 287, 417
FatI	CATG	2 cut(s)	37, 415
FokI	GGATG	2 cut(s)	38, 485
FspBI	CTAG	1 cut(s)	51
HaeIII	GGCC	3 cut(s)	429, 498, 518
Hin1II	CATG	2 cut(s)	41, 419
HinfI	GANTC	3 cut(s)	4, 75, 193
Hpy188I	TCNGA	1 cut(s)	198
Hpy188III	TCNNGA	3 cut(s)	38, 158, 227
HpyAV	CCTTC	2 cut(s)	193, 419
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4V	TGCA	2 cut(s)	62, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	373, 515
HpyF3I	CTNAG	2 cut(s)	102, 228
Hsp92II	CATG	2 cut(s)	41, 419
Kzo9I	GATC	3 cut(s)	40, 160, 348
LguI	GCTCTTC	1 cut(s)	254
LmnI	GCTCC	2 cut(s)	229, 514
LpnPI	CCDG	7 cut(s)	29, 89, 143, 150, 218, 240, 423
LweI	GCATC	1 cut(s)	382
MaeI	CTAG	1 cut(s)	51
MalI	GATC	3 cut(s)	42, 162, 350
MboI	GATC	3 cut(s)	40, 160, 348
MboII	GAAGA	2 cut(s)	101, 241
MfeI	CAATTG	1 cut(s)	325
MhlI	GDGCHC	1 cut(s)	402
MluCI	AATT	7 cut(s)	153, 186, 306, 318, 325, 369, 435
MlyI	GAGTC	2 cut(s)	69, 202
MmeI	TCCRAC	1 cut(s)	400
MnlI	CCTC	1 cut(s)	264
MseI	TTAA	4 cut(s)	20, 93, 278, 529
MunI	CAATTG	1 cut(s)	325
Mva1269I	GAATGC	2 cut(s)	62, 103
MwoI	GCNNNNNNNGC	2 cut(s)	373, 515
NdeII	GATC	3 cut(s)	40, 160, 348
NlaIII	CATG	2 cut(s)	41, 419
NlaIV	GGNNCC	1 cut(s)	510
NmeAIII	GCCGAG	1 cut(s)	57
PagI	TCATGA	1 cut(s)	37
PceI	AGGCCT	1 cut(s)	429
PciSI	GCTCTTC	1 cut(s)	254
PctI	GAATGC	2 cut(s)	62, 103
PfeI	GAWTC	1 cut(s)	4
PleI	GAGTC	2 cut(s)	69, 201
PpsI	GAGTC	2 cut(s)	69, 201
PshAI	GACNNNNGTC	1 cut(s)	173
PspN4I	GGNNCC	1 cut(s)	510
SapI	GCTCTTC	1 cut(s)	254
SaqAI	TTAA	4 cut(s)	20, 93, 278, 529
Sau3AI	GATC	3 cut(s)	40, 160, 348
SchI	GAGTC	2 cut(s)	69, 202
SduI	GDGCHC	1 cut(s)	402
SetI	ASST	7 cut(s)	33, 125, 139, 204, 211, 234, 466
SfaNI	GCATC	1 cut(s)	382
SfcI	CTRYAG	1 cut(s)	459
Sse9I	AATT	7 cut(s)	153, 186, 306, 318, 325, 369, 435
SseBI	AGGCCT	1 cut(s)	429
SsiI	CCGC	1 cut(s)	376
SspMI	CTAG	1 cut(s)	51
StuI	AGGCCT	1 cut(s)	429
TaaI	ACNGT	1 cut(s)	460
TasI	AATT	7 cut(s)	153, 186, 306, 318, 325, 369, 435
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	4 cut(s)	20, 93, 278, 529
Tru9I	TTAA	4 cut(s)	20, 93, 278, 529
TspDTI	ATGAA	3 cut(s)	17, 26, 456
XagI	CCTNNNNNAGG	1 cut(s)	503
XapI	RAATTY	2 cut(s)	153, 369
XcmI	CCANNNNNNNNNTGG	1 cut(s)	324
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.