Rh5CG434400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002555
Physical Location & Seq
Forward (+)
60122690 .. 60143577
20888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG434400.1

Sequence Viewer

Length: 912 bp
ATGGATGAGGAGATGAGGGGTGCGCTGGTGTGGGTGTTCTTAGAGGATGTTAAGGGTGTTGAAGAGGTGCCAAAGGATGTGGATGATGAAAAGGAGCCAGTGGATGTAGATCCACTAGATGTAGATGATGATGAAGAGGTTCCTCTAGATGGAATTATGCCTGAAAACTGGGAATATACTGATGATGGGCCTGAAGTGCAAAGCAATGGTCCAGAAATGAGTGAAGCTGCTAATGGGCCTGAAGTGCAGAGTGGTTGTCCACAGTCAACTGAAGGTAATGGGCCTAGAGTTGAAGCTCAAGCCCGTGGCCCAACTATTACAATTGCAAGAGGCAGAGATCATCAAGCATCCACTTCAAGACAAAAAGATAAAGGGAAGCAGAAAGTTATAGAGGAAGAAGGGAATGTGGAGAATGATCAAATGCAGGGGAATGGGGGAGCTGTGAATCAGCAGCAGCAACCCCAAGCTCAAGGGAATGAAGGGGATGTGAATCAGCACCAGCAGCAGCCCCAAGCTCAAAATGTTGAAGCTCCTCAGAATCATCAGCAACAACACCAGGTTTCAATGGAGGATGTTGAGGTTCCAGCTCCTGCAGAGCCACCACAGGTTAATTATGAGACTATTACTGGACCTGTGAATGTTGATCACTTCAATGTAATGCCATCACAAAATTCCAACAATAATGGTCAGCAGACACAGATGGGTGCTCAGTGGTTTGGACATGTTTATGATGAATATATGCATCTATGGAAGTATTTGGATTTGCTTTATCCTTTCTGGTTATGCATCGGCGGCCAGTGTCATGATATCCCTGACAAACCTGACATTCACGGCGGAGCTAACAACCGGCGGTCATGTTTGAGATCAGTTGTGAAGGTCAAACGGTGGTCAGCGGTTAAAGGTGTGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

303

Amino Acids

33.68

Weight (kDa)

4.41

Isoelectric Point (pI)

53.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 67
AciI CCGC 4 cut(s) 792, 834, 850, 893
AclWI GGATC 1 cut(s) 104
AcoI YGGCCR 1 cut(s) 793
AcsI RAATTY 1 cut(s) 670
AcuI CTGAAG 3 cut(s) 213, 261, 291
AfiI CCNNNNNNNGG 1 cut(s) 149
AflIII ACRYGT 1 cut(s) 721
AgsI TTSAA 6 cut(s) 62, 293, 357, 527, 564, 652
AjnI CCWGG 1 cut(s) 555
AluBI AGCT 8 cut(s) 227, 296, 440, 467, 515, 530, 587, 839
AluI AGCT 8 cut(s) 227, 296, 440, 467, 515, 530, 587, 839
Alw21I GWGCWC 1 cut(s) 709
Alw26I GTCTC 1 cut(s) 611
AlwI GGATC 1 cut(s) 104
AlwNI CAGNNNCTG 1 cut(s) 590
AoxI GGCC 5 cut(s) 188, 236, 281, 307, 793
ApeKI GCWGC 5 cut(s) 227, 451, 454, 502, 505
ApoI RAATTY 1 cut(s) 670
ArsI GACNNNNNNTTYG 2 cut(s) 193, 225
Asp700I GAANNNNTTC 1 cut(s) 138
AspLEI GCGC 1 cut(s) 25
AspS9I GGNCC 6 cut(s) 188, 209, 236, 281, 308, 629
AvaII GGWCC 2 cut(s) 209, 629
BanI GGYRCC 1 cut(s) 67
Bbv12I GWGCWC 1 cut(s) 709
BbvI GCAGC 5 cut(s) 214, 463, 466, 514, 517
BccI CCATC 4 cut(s) 143, 179, 670, 694
BceAI ACGGC 1 cut(s) 847
BciT130I CCWGG 1 cut(s) 557
BclI TGATCA 2 cut(s) 415, 643
BcoDI GTCTC 1 cut(s) 611
BfaI CTAG 3 cut(s) 116, 146, 285
BfmI CTRYAG 1 cut(s) 591
BisI GCNGC 6 cut(s) 228, 452, 455, 503, 506, 793
BlsI GCNGC 6 cut(s) 229, 453, 456, 504, 507, 794
Bme1390I CCNGG 1 cut(s) 557
Bme18I GGWCC 2 cut(s) 209, 629
BmgT120I GGNCC 6 cut(s) 188, 209, 236, 281, 308, 629
BmiI GGNNCC 4 cut(s) 69, 96, 141, 582
BmrFI CCNGG 1 cut(s) 557
BmrI ACTGGG 1 cut(s) 178
BmsI GCATC 3 cut(s) 356, 751, 795
BmuI ACTGGG 1 cut(s) 178
BpuEI CTTGAG 2 cut(s) 282, 453
BsaBI GATNNNNATC 2 cut(s) 108, 489
BsaJI CCNNGG 1 cut(s) 304
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse118I RCCGGY 1 cut(s) 846
Bse1I ACTGG 4 cut(s) 98, 173, 631, 796
Bse3DI GCAATG 1 cut(s) 211
Bse8I GATNNNNATC 2 cut(s) 108, 489
BseBI CCWGG 1 cut(s) 557
BseDI CCNNGG 1 cut(s) 304
BseGI GGATG 8 cut(s) 10, 52, 82, 88, 109, 347, 490, 577
BseJI GATNNNNATC 2 cut(s) 108, 489
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMI GCAATG 1 cut(s) 211
BseMII CTCAG 2 cut(s) 548, 722
BseNI ACTGG 4 cut(s) 98, 173, 631, 796
BseRI GAGGAG 2 cut(s) 23, 522
BseXI GCAGC 5 cut(s) 214, 463, 466, 514, 517
BsgI GTGCAG 1 cut(s) 266
BshFI GGCC 5 cut(s) 190, 238, 283, 309, 795
BshNI GGYRCC 1 cut(s) 67
BsiHKAI GWGCWC 1 cut(s) 709
BsiSI CCGG 1 cut(s) 847
BslI CCNNNNNNNGG 1 cut(s) 149
BsmAI GTCTC 1 cut(s) 611
BsnI GGCC 5 cut(s) 190, 238, 283, 309, 795
Bsp1286I GDGCHC 1 cut(s) 709
Bsp143I GATC 5 cut(s) 109, 337, 415, 643, 863
BspACI CCGC 4 cut(s) 792, 834, 850, 893
BspANI GGCC 5 cut(s) 190, 238, 283, 309, 795
BspCNI CTCAG 2 cut(s) 547, 721
BspHI TCATGA 1 cut(s) 802
BspLI GGNNCC 4 cut(s) 69, 96, 141, 582
BspMAI CTGCAG 1 cut(s) 595
BspPI GGATC 1 cut(s) 104
BspT107I GGYRCC 1 cut(s) 67
BsrDI GCAATG 1 cut(s) 211
BsrFI RCCGGY 1 cut(s) 846
BsrI ACTGG 4 cut(s) 98, 173, 631, 796
BssAI RCCGGY 1 cut(s) 846
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 5 cut(s) 109, 337, 415, 643, 863
Bst2UI CCWGG 1 cut(s) 557
Bst4CI ACNGT 2 cut(s) 264, 885
Bst6I CTCTTC 2 cut(s) 57, 129
BstDEI CTNAG 3 cut(s) 40, 534, 708
BstDSI CCRYGG 1 cut(s) 304
BstF5I GGATG 8 cut(s) 10, 52, 82, 88, 109, 347, 490, 577
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 5 cut(s) 112, 340, 418, 646, 866
BstMAI GTCTC 1 cut(s) 611
BstMBI GATC 5 cut(s) 109, 337, 415, 643, 863
BstMWI GCNNNNNNNGC 4 cut(s) 196, 244, 502, 792
BstNI CCWGG 1 cut(s) 557
BstNSI RCATGY 1 cut(s) 725
BstSCI CCNGG 1 cut(s) 555
BstSFI CTRYAG 1 cut(s) 591
BstV1I GCAGC 5 cut(s) 214, 463, 466, 514, 517
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BsuRI GGCC 5 cut(s) 190, 238, 283, 309, 795
BtgI CCRYGG 1 cut(s) 304
BtsCI GGATG 8 cut(s) 10, 52, 82, 88, 109, 347, 490, 577
BtsIMutI CAGTG 3 cut(s) 105, 716, 803
CaiI CAGNNNCTG 1 cut(s) 590
CciI TCATGA 1 cut(s) 802
CfoI GCGC 1 cut(s) 25
Cfr10I RCCGGY 1 cut(s) 846
Cfr13I GGNCC 6 cut(s) 188, 209, 236, 281, 308, 629
CsiI ACCWGGT 1 cut(s) 555
CspCI CAANNNNNGTGG 2 cut(s) 60, 95
CviAII CATG 3 cut(s) 722, 803, 855
DdeI CTNAG 3 cut(s) 40, 534, 708
DpnI GATC 5 cut(s) 111, 339, 417, 645, 865
DpnII GATC 5 cut(s) 109, 337, 415, 643, 863
EaeI YGGCCR 1 cut(s) 793
Eam1104I CTCTTC 2 cut(s) 57, 129
EarI CTCTTC 2 cut(s) 57, 129
EciI GGCGGA 1 cut(s) 849
Eco32I GATATC 1 cut(s) 808
Eco47I GGWCC 2 cut(s) 209, 629
Eco57I CTGAAG 3 cut(s) 213, 261, 291
EcoRII CCWGG 1 cut(s) 555
EcoRV GATATC 1 cut(s) 808
EcoT22I ATGCAT 2 cut(s) 744, 788
FaeI CATG 3 cut(s) 725, 806, 858
FatI CATG 3 cut(s) 721, 802, 854
FbaI TGATCA 2 cut(s) 415, 643
Fnu4HI GCNGC 6 cut(s) 228, 452, 455, 503, 506, 793
FokI GGATG 8 cut(s) 17, 59, 89, 95, 116, 334, 497, 584
Fsp4HI GCNGC 6 cut(s) 228, 452, 455, 503, 506, 793
FspBI CTAG 3 cut(s) 116, 146, 285
GlaI GCGC 1 cut(s) 24
GluI GCNGC 6 cut(s) 228, 452, 455, 503, 506, 793
HaeIII GGCC 5 cut(s) 190, 238, 283, 309, 795
HapII CCGG 1 cut(s) 847
HhaI GCGC 1 cut(s) 25
Hin1II CATG 3 cut(s) 725, 806, 858
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HincII GTYRAC 1 cut(s) 267
HindII GTYRAC 1 cut(s) 267
HinfI GANTC 3 cut(s) 445, 490, 538
HpaII CCGG 1 cut(s) 847
Hpy166II GTNNAC 2 cut(s) 260, 267
Hpy188I TCNGA 1 cut(s) 537
Hpy188III TCNNGA 4 cut(s) 146, 212, 357, 803
Hpy8I GTNNAC 2 cut(s) 260, 267
HpyAV CCTTC 4 cut(s) 266, 392, 473, 868
HpyCH4III ACNGT 2 cut(s) 264, 885
HpyCH4V TGCA 7 cut(s) 199, 247, 326, 424, 593, 742, 786
HpyF10VI GCNNNNNNNGC 4 cut(s) 196, 244, 502, 792
HpyF3I CTNAG 3 cut(s) 40, 534, 708
Hsp92II CATG 3 cut(s) 725, 806, 858
HspAI GCGC 1 cut(s) 23
Ksp22I TGATCA 2 cut(s) 415, 643
Kzo9I GATC 5 cut(s) 109, 337, 415, 643, 863
LmnI GCTCC 5 cut(s) 94, 437, 535, 592, 836
Lsp1109I GCAGC 5 cut(s) 214, 463, 466, 514, 517
LweI GCATC 3 cut(s) 356, 751, 795
MabI ACCWGGT 1 cut(s) 555
MaeI CTAG 3 cut(s) 116, 146, 285
MalI GATC 5 cut(s) 111, 339, 417, 645, 865
MboI GATC 5 cut(s) 109, 337, 415, 643, 863
MboII GAAGA 3 cut(s) 74, 146, 407
MfeI CAATTG 1 cut(s) 321
MflI RGATCY 1 cut(s) 109
MhlI GDGCHC 1 cut(s) 709
MluCI AATT 4 cut(s) 153, 321, 610, 670
MmeI TCCRAC 1 cut(s) 699
Mph1103I ATGCAT 2 cut(s) 744, 788
MroXI GAANNNNTTC 1 cut(s) 138
MseI TTAA 3 cut(s) 51, 609, 897
MslI CAYNNNNRTG 2 cut(s) 651, 726
MspA1I CMGCKG 1 cut(s) 893
MspI CCGG 1 cut(s) 847
MspR9I CCNGG 1 cut(s) 557
MunI CAATTG 1 cut(s) 321
MvaI CCWGG 1 cut(s) 557
MwoI GCNNNNNNNGC 4 cut(s) 196, 244, 502, 792
NdeII GATC 5 cut(s) 109, 337, 415, 643, 863
NlaIII CATG 3 cut(s) 725, 806, 858
NlaIV GGNNCC 4 cut(s) 69, 96, 141, 582
NsiI ATGCAT 2 cut(s) 744, 788
NspI RCATGY 1 cut(s) 725
PagI TCATGA 1 cut(s) 802
PciI ACATGT 1 cut(s) 721
PdmI GAANNNNTTC 1 cut(s) 138
PfeI GAWTC 3 cut(s) 445, 490, 538
PkrI GCNGC 6 cut(s) 229, 453, 456, 504, 507, 794
PscI ACATGT 1 cut(s) 721
Psp6I CCWGG 1 cut(s) 555
PspGI CCWGG 1 cut(s) 555
PspN4I GGNNCC 4 cut(s) 69, 96, 141, 582
PspPI GGNCC 6 cut(s) 188, 209, 236, 281, 308, 629
PstI CTGCAG 1 cut(s) 595
PstNI CAGNNNCTG 1 cut(s) 590
PsuI RGATCY 1 cut(s) 109
RseI CAYNNNNRTG 2 cut(s) 651, 726
SaqAI TTAA 3 cut(s) 51, 609, 897
SatI GCNGC 6 cut(s) 228, 452, 455, 503, 506, 793
Sau3AI GATC 5 cut(s) 109, 337, 415, 643, 863
Sau96I GGNCC 6 cut(s) 188, 209, 236, 281, 308, 629
ScrFI CCNGG 1 cut(s) 557
SduI GDGCHC 1 cut(s) 709
SexAI ACCWGGT 1 cut(s) 555
SfaNI GCATC 3 cut(s) 356, 751, 795
SfcI CTRYAG 1 cut(s) 591
SinI GGWCC 2 cut(s) 209, 629
SmiMI CAYNNNNRTG 2 cut(s) 651, 726
SmlI CTYRAG 2 cut(s) 297, 468
SmoI CTYRAG 2 cut(s) 297, 468
Sse9I AATT 4 cut(s) 153, 321, 610, 670
SsiI CCGC 4 cut(s) 792, 834, 850, 893
SspMI CTAG 3 cut(s) 116, 146, 285
StyD4I CCNGG 1 cut(s) 555
TaaI ACNGT 2 cut(s) 264, 885
TasI AATT 4 cut(s) 153, 321, 610, 670
TauI GCSGC 1 cut(s) 795
TfiI GAWTC 3 cut(s) 445, 490, 538
Tru1I TTAA 3 cut(s) 51, 609, 897
Tru9I TTAA 3 cut(s) 51, 609, 897
TscAI CASTG 3 cut(s) 105, 716, 803
TseI GCWGC 5 cut(s) 227, 451, 454, 502, 505
TspDTI ATGAA 4 cut(s) 102, 147, 492, 747
TspRI CASTG 3 cut(s) 105, 716, 803
VpaK11BI GGWCC 2 cut(s) 209, 629
XapI RAATTY 1 cut(s) 670
XbaI TCTAGA 1 cut(s) 145
XceI RCATGY 1 cut(s) 725
XmnI GAANNNNTTC 1 cut(s) 138
XspI CTAG 3 cut(s) 116, 146, 285
Zsp2I ATGCAT 2 cut(s) 744, 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.