Rh7BG242700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0002555
Physical Location & Seq
Reverse (-)
21612363 .. 21612823
461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG242700.1

Sequence Viewer

Length: 345 bp
ATGCCAGAAGAGGTGATAAATATGCAGCAACAGCCTGAAATGGAAGTTCAAGTTCCAGAAAATGCAGAGGTGCCCCAGGTCATTCATCAGCAATCACAAGTCATTTCTGAAAATTTTAGTGACAATGTGACAATTGATGTGGAACTCGTCACTGGAATGCAATCACAAACTTCAACAAATACTGCATTGCAACCACAGCCACAAGGTGCCTCCAAGTTAGTATTCTCAGGAAAGAGATTCAAGTCACCAGCAAGAAGGATCAAACCAGGAAAGAAGCCTACAGACGGATCTAGTTCTGCCACAAGCTCTGGGACTAATTCAAGAAAGCCCACATGGAAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.54

Weight (kDa)

8.03

Isoelectric Point (pI)

57.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 70, 206
AclWI GGATC 2 cut(s) 266, 295
AcsI RAATTY 1 cut(s) 112
AdeI CACNNNGTG 1 cut(s) 206
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 1 cut(s) 284
AgsI TTSAA 4 cut(s) 50, 174, 241, 321
AjnI CCWGG 2 cut(s) 75, 265
AjuI GAANNNNNNNTTGG 2 cut(s) 206, 238
AluBI AGCT 1 cut(s) 306
AluI AGCT 1 cut(s) 306
AlwI GGATC 2 cut(s) 266, 295
ApeKI GCWGC 1 cut(s) 25
ApoI RAATTY 1 cut(s) 112
AsuHPI GGTGA 2 cut(s) 25, 237
BaeGI GKGCMC 1 cut(s) 75
BanI GGYRCC 2 cut(s) 70, 206
BbvI GCAGC 1 cut(s) 37
BciT130I CCWGG 2 cut(s) 77, 267
BfaI CTAG 1 cut(s) 291
BfmI CTRYAG 1 cut(s) 279
BisI GCNGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 27
BmcAI AGTACT 1 cut(s) 341
Bme1390I CCNGG 2 cut(s) 77, 267
BmiI GGNNCC 2 cut(s) 72, 208
BmrFI CCNGG 2 cut(s) 77, 267
BsaJI CCNNGG 1 cut(s) 75
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse1I ACTGG 1 cut(s) 157
Bse3DI GCAATG 1 cut(s) 185
BseBI CCWGG 2 cut(s) 77, 267
BseDI CCNNGG 1 cut(s) 75
BseLI CCNNNNNNNGG 1 cut(s) 284
BseMI GCAATG 1 cut(s) 185
BseMII CTCAG 1 cut(s) 240
BseNI ACTGG 1 cut(s) 157
BseSI GKGCMC 1 cut(s) 75
BseXI GCAGC 1 cut(s) 37
BshNI GGYRCC 2 cut(s) 70, 206
BslFI GGGAC 1 cut(s) 325
BslI CCNNNNNNNGG 1 cut(s) 284
BsmFI GGGAC 1 cut(s) 325
BsmI GAATGC 1 cut(s) 162
Bsp1286I GDGCHC 1 cut(s) 75
Bsp143I GATC 2 cut(s) 258, 287
BspCNI CTCAG 1 cut(s) 239
BspLI GGNNCC 2 cut(s) 72, 208
BspPI GGATC 2 cut(s) 266, 295
BspT107I GGYRCC 2 cut(s) 70, 206
BsrDI GCAATG 1 cut(s) 185
BsrI ACTGG 1 cut(s) 157
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 2 cut(s) 258, 287
Bst2UI CCWGG 2 cut(s) 77, 267
Bst6I CTCTTC 1 cut(s) 3
BstDEI CTNAG 1 cut(s) 226
BstKTI GATC 2 cut(s) 261, 290
BstMBI GATC 2 cut(s) 258, 287
BstMWI GCNNNNNNNGC 2 cut(s) 31, 196
BstNI CCWGG 2 cut(s) 77, 267
BstSCI CCNGG 2 cut(s) 75, 265
BstSFI CTRYAG 1 cut(s) 279
BstSLI GKGCMC 1 cut(s) 75
BstV1I GCAGC 1 cut(s) 37
BstX2I RGATCY 1 cut(s) 287
BstYI RGATCY 1 cut(s) 287
BtsIMutI CAGTG 1 cut(s) 150
Csp6I GTAC 1 cut(s) 340
CspCI CAANNNNNGTGG 2 cut(s) 120, 155
CviAII CATG 1 cut(s) 333
CviJI RGCY 5 cut(s) 34, 199, 277, 306, 328
CviKI_1 RGCY 5 cut(s) 34, 199, 277, 306, 328
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 1 cut(s) 226
DpnI GATC 2 cut(s) 260, 289
DpnII GATC 2 cut(s) 258, 287
DraIII CACNNNGTG 1 cut(s) 206
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
EcoRII CCWGG 2 cut(s) 75, 265
FaeI CATG 1 cut(s) 336
FaiI YATR 2 cut(s) 23, 334
FaqI GGGAC 1 cut(s) 325
FatI CATG 1 cut(s) 332
Fnu4HI GCNGC 1 cut(s) 26
Fsp4HI GCNGC 1 cut(s) 26
FspBI CTAG 1 cut(s) 291
GluI GCNGC 1 cut(s) 26
Hin1II CATG 1 cut(s) 336
HinfI GANTC 1 cut(s) 237
HphI GGTGA 2 cut(s) 25, 237
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 3 cut(s) 56, 228, 321
HpyAV CCTTC 1 cut(s) 249
HpyCH4V TGCA 5 cut(s) 25, 65, 160, 185, 190
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 196
HpyF3I CTNAG 1 cut(s) 226
Hsp92II CATG 1 cut(s) 336
Kzo9I GATC 2 cut(s) 258, 287
Lsp1109I GCAGC 1 cut(s) 37
MaeI CTAG 1 cut(s) 291
MaeIII GTNAC 4 cut(s) 119, 127, 148, 243
MalI GATC 2 cut(s) 260, 289
MboI GATC 2 cut(s) 258, 287
MboII GAAGA 1 cut(s) 20
MfeI CAATTG 1 cut(s) 132
MflI RGATCY 1 cut(s) 287
MhlI GDGCHC 1 cut(s) 75
MluCI AATT 3 cut(s) 112, 132, 316
MnlI CCTC 3 cut(s) 4, 61, 220
MslI CAYNNNNRTG 1 cut(s) 155
MspR9I CCNGG 2 cut(s) 77, 267
MunI CAATTG 1 cut(s) 132
Mva1269I GAATGC 1 cut(s) 162
MvaI CCWGG 2 cut(s) 77, 267
MwoI GCNNNNNNNGC 2 cut(s) 31, 196
NdeII GATC 2 cut(s) 258, 287
NlaIII CATG 1 cut(s) 336
NlaIV GGNNCC 2 cut(s) 72, 208
NmuCI GTSAC 4 cut(s) 119, 127, 148, 243
PctI GAATGC 1 cut(s) 162
PfeI GAWTC 1 cut(s) 237
PkrI GCNGC 1 cut(s) 27
Psp6I CCWGG 2 cut(s) 75, 265
PspGI CCWGG 2 cut(s) 75, 265
PspN4I GGNNCC 2 cut(s) 72, 208
PsuI RGATCY 1 cut(s) 287
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
RseI CAYNNNNRTG 1 cut(s) 155
SatI GCNGC 1 cut(s) 26
Sau3AI GATC 2 cut(s) 258, 287
ScaI AGTACT 1 cut(s) 341
ScrFI CCNGG 2 cut(s) 77, 267
SduI GDGCHC 1 cut(s) 75
SetI ASST 5 cut(s) 15, 72, 81, 208, 308
SfcI CTRYAG 1 cut(s) 279
SmiMI CAYNNNNRTG 1 cut(s) 155
Sse9I AATT 3 cut(s) 112, 132, 316
SspMI CTAG 1 cut(s) 291
StyD4I CCNGG 2 cut(s) 75, 265
TasI AATT 3 cut(s) 112, 132, 316
TatI WGTACW 1 cut(s) 339
TfiI GAWTC 1 cut(s) 237
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 4 cut(s) 119, 127, 148, 243
TseI GCWGC 1 cut(s) 25
Tsp45I GTSAC 4 cut(s) 119, 127, 148, 243
TspDTI ATGAA 1 cut(s) 74
TspGWI ACGGA 1 cut(s) 300
TspRI CASTG 1 cut(s) 157
XapI RAATTY 1 cut(s) 112
XspI CTAG 1 cut(s) 291
ZrmI AGTACT 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.