Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002555

Physical Location & Seq

Genomic Coordinates Reverse (-)

64010218 .. 64011419

Gene Structure 1202 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030592

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCTAATTATTGGAGATATTTCCGGCTGGATGGGGATCCACCTGTTGTTTCAGGAGCTGTTGAGGGTGTTGAAGAGGTGCCAAAGGATGTGGATGGTGAAGAGGAGCCAGTGGATGTAGATCCACTGGATGTAGATGATGATGAAGAGGTTCCTCTGGATAGAGTTATGCCTGAAAAATGGGAATATATTGATGATGGGCCTGAAGTGCAAAGCAATGCTCCAAAAATGAGTGAAGCTGGTAATGGGCCTGAATTACAGAGCAATGCTCCACAGTCAAGTTGTACTGCCAATGGGCCTGAAGTGCAGAGTGGTGGTCCACAGTCAACTGAAGGCAATGGGCCTAGAGTTGGAGCTCAAACCCGTGGCCAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

13.43

Weight (kDa)

4.05

Isoelectric Point (pI)

67.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097701 RchiOBHm_Chr6g0292791
rosa_laevigata	RLG00000015275 RLG00000021547 RLG00000030592
rosa_roxburghii	Rroxscaffold_1G00036680 Rroxscaffold_1G00041910 Rroxscaffold_4G00298950
rosa_samantha	Rh1BG038600 Rh1BG413300 Rh1CG442700 Rh1DG446300 Rh2AG239900 Rh2AG454600 Rh2BG458800 Rh2CG329000 Rh2CG441700 Rh2DG247800 Rh3AG319400 Rh3DG074200 Rh3DG253400 Rh4AG134000 Rh4CG324700 Rh4DG018300 Rh5BG409600 Rh5CG361100 Rh5CG434400 Rh5DG243200 Rh6AG347300 Rh6CG028700 Rh6CG148300 Rh6CG361100 Rh6DG027800 Rh7AG187400 Rh7BG242700
rosa_wichuraiana	Rw0G008450 Rw2G012270 Rw4G030630 Rw5G021380 Rw5G046710 Rw6G001850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	79
AclWI	GGATC	3 cut(s)	32, 45, 116
AcoI	YGGCCR	1 cut(s)	367
AcuI	CTGAAG	3 cut(s)	225, 321, 351
AfaI	GTAC	1 cut(s)	286
AfiI	CCNNNNNNNGG	1 cut(s)	350
AgsI	TTSAA	1 cut(s)	74
AluBI	AGCT	3 cut(s)	59, 239, 356
AluI	AGCT	3 cut(s)	59, 239, 356
Alw21I	GWGCWC	1 cut(s)	358
AlwI	GGATC	3 cut(s)	32, 45, 116
AlwNI	CAGNNNCTG	1 cut(s)	59
AoxI	GGCC	5 cut(s)	200, 248, 296, 341, 367
Asp700I	GAANNNNTTC	1 cut(s)	150
AspS9I	GGNCC	5 cut(s)	200, 248, 296, 317, 341
AsuHPI	GGTGA	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	317
BalI	TGGCCA	1 cut(s)	369
BamHI	GGATCC	1 cut(s)	37
BanI	GGYRCC	1 cut(s)	79
BanII	GRGCYC	1 cut(s)	358
Bbv12I	GWGCWC	1 cut(s)	358
BccI	CCATC	3 cut(s)	26, 89, 191
BfaI	CTAG	1 cut(s)	345
Bme18I	GGWCC	1 cut(s)	317
BmgT120I	GGNCC	5 cut(s)	200, 248, 296, 317, 341
BmiI	GGNNCC	4 cut(s)	39, 81, 108, 153
BplI	GAGNNNNNCTC	2 cut(s)	253, 285
BsaBI	GATNNNNATC	2 cut(s)	36, 120
BsaJI	CCNNGG	1 cut(s)	364
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse1I	ACTGG	2 cut(s)	110, 132
Bse3DI	GCAATG	3 cut(s)	223, 271, 343
Bse8I	GATNNNNATC	2 cut(s)	36, 120
BseDI	CCNNGG	1 cut(s)	364
BseGI	GGATG	5 cut(s)	37, 94, 100, 121, 136
BseJI	GATNNNNATC	2 cut(s)	36, 120
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMI	GCAATG	3 cut(s)	223, 271, 343
BseNI	ACTGG	2 cut(s)	110, 132
BseRI	GAGGAG	1 cut(s)	119
BsgI	GTGCAG	1 cut(s)	326
BshFI	GGCC	5 cut(s)	202, 250, 298, 343, 369
BshNI	GGYRCC	1 cut(s)	79
BsiHKAI	GWGCWC	1 cut(s)	358
BsiSI	CCGG	1 cut(s)	25
BslI	CCNNNNNNNGG	1 cut(s)	350
BsnI	GGCC	5 cut(s)	202, 250, 298, 343, 369
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp143I	GATC	2 cut(s)	37, 121
BspANI	GGCC	5 cut(s)	202, 250, 298, 343, 369
BspLI	GGNNCC	4 cut(s)	39, 81, 108, 153
BspPI	GGATC	3 cut(s)	32, 45, 116
BspT107I	GGYRCC	1 cut(s)	79
BsrDI	GCAATG	3 cut(s)	223, 271, 343
BsrI	ACTGG	2 cut(s)	110, 132
BssECI	CCNNGG	1 cut(s)	364
BssMI	GATC	2 cut(s)	37, 121
Bst4CI	ACNGT	2 cut(s)	276, 324
Bst6I	CTCTTC	3 cut(s)	69, 96, 141
BstDSI	CCRYGG	1 cut(s)	364
BstF5I	GGATG	5 cut(s)	37, 94, 100, 121, 136
BstKTI	GATC	2 cut(s)	40, 124
BstMBI	GATC	2 cut(s)	37, 121
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 304
BstX2I	RGATCY	2 cut(s)	37, 121
BstYI	RGATCY	2 cut(s)	37, 121
BsuRI	GGCC	5 cut(s)	202, 250, 298, 343, 369
BtgI	CCRYGG	1 cut(s)	364
BtsCI	GGATG	5 cut(s)	37, 94, 100, 121, 136
BtsIMutI	CAGTG	2 cut(s)	117, 125
CaiI	CAGNNNCTG	1 cut(s)	59
Cfr13I	GGNCC	5 cut(s)	200, 248, 296, 317, 341
Csp6I	GTAC	1 cut(s)	285
CspCI	CAANNNNNGTGG	2 cut(s)	72, 107
CviQI	GTAC	1 cut(s)	285
DpnI	GATC	2 cut(s)	39, 123
DpnII	GATC	2 cut(s)	37, 121
EaeI	YGGCCR	1 cut(s)	367
Eam1104I	CTCTTC	3 cut(s)	69, 96, 141
EarI	CTCTTC	3 cut(s)	69, 96, 141
Ecl136II	GAGCTC	1 cut(s)	356
Eco24I	GRGCYC	1 cut(s)	358
Eco47I	GGWCC	1 cut(s)	317
Eco53kI	GAGCTC	1 cut(s)	356
Eco57I	CTGAAG	3 cut(s)	225, 321, 351
EcoICRI	GAGCTC	1 cut(s)	356
EcoT38I	GRGCYC	1 cut(s)	358
FaiI	YATR	3 cut(s)	170, 189, 376
FokI	GGATG	5 cut(s)	44, 101, 107, 128, 143
FriOI	GRGCYC	1 cut(s)	358
FspBI	CTAG	1 cut(s)	345
HaeIII	GGCC	5 cut(s)	202, 250, 298, 343, 369
HapII	CCGG	1 cut(s)	25
HincII	GTYRAC	1 cut(s)	327
HindII	GTYRAC	1 cut(s)	327
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	2 cut(s)	320, 327
Hpy188III	TCNNGA	2 cut(s)	54, 158
Hpy8I	GTNNAC	2 cut(s)	320, 327
HpyAV	CCTTC	1 cut(s)	326
HpyCH4III	ACNGT	2 cut(s)	276, 324
HpyCH4V	TGCA	2 cut(s)	211, 307
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 304
Kzo9I	GATC	2 cut(s)	37, 121
LmnI	GCTCC	5 cut(s)	56, 106, 226, 274, 353
MaeI	CTAG	1 cut(s)	345
MalI	GATC	2 cut(s)	39, 123
MboI	GATC	2 cut(s)	37, 121
MboII	GAAGA	3 cut(s)	86, 113, 158
MflI	RGATCY	2 cut(s)	37, 121
MhlI	GDGCHC	1 cut(s)	358
MlsI	TGGCCA	1 cut(s)	369
MluCI	AATT	2 cut(s)	7, 254
MluNI	TGGCCA	1 cut(s)	369
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	5 cut(s)	58, 70, 97, 142, 165
Mox20I	TGGCCA	1 cut(s)	369
MroXI	GAANNNNTTC	1 cut(s)	150
MscI	TGGCCA	1 cut(s)	369
Msp20I	TGGCCA	1 cut(s)	369
MspI	CCGG	1 cut(s)	25
MwoI	GCNNNNNNNGC	2 cut(s)	208, 304
NdeII	GATC	2 cut(s)	37, 121
NlaIV	GGNNCC	4 cut(s)	39, 81, 108, 153
PdmI	GAANNNNTTC	1 cut(s)	150
Psp124BI	GAGCTC	1 cut(s)	358
PspN4I	GGNNCC	4 cut(s)	39, 81, 108, 153
PspPI	GGNCC	5 cut(s)	200, 248, 296, 317, 341
PstNI	CAGNNNCTG	1 cut(s)	59
PsuI	RGATCY	2 cut(s)	37, 121
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
SacI	GAGCTC	1 cut(s)	358
Sau3AI	GATC	2 cut(s)	37, 121
Sau96I	GGNCC	5 cut(s)	200, 248, 296, 317, 341
SduI	GDGCHC	1 cut(s)	358
SetI	ASST	6 cut(s)	46, 61, 81, 153, 241, 358
SinI	GGWCC	1 cut(s)	317
Sse9I	AATT	2 cut(s)	7, 254
SspMI	CTAG	1 cut(s)	345
SstI	GAGCTC	1 cut(s)	358
TaaI	ACNGT	2 cut(s)	276, 324
TasI	AATT	2 cut(s)	7, 254
TatI	WGTACW	1 cut(s)	284
TscAI	CASTG	2 cut(s)	117, 132
TspDTI	ATGAA	1 cut(s)	159
TspRI	CASTG	2 cut(s)	117, 132
VpaK11BI	GGWCC	1 cut(s)	317
XmnI	GAANNNNTTC	1 cut(s)	150
XspI	CTAG	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.