Rh3AG319400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0002555
Physical Location & Seq
Reverse (-)
44231982 .. 44247062
15081 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG319400.1

Sequence Viewer

Length: 525 bp
ATGGGTCACTATTACATACGTACCAATGCGCTAGCTACAAAGTACAAACCATTGGATTTGATTAGGCACCCAAAGAGCATAGAAAAGATTACGAGCTCTGAGCTCTTCCTACAAGATAATAAATTCCAGGAGAATGCTGAAAATGAGCTGCCTACAGAAGATGGTGCAAATGTTCTGCCACCAGAAGATGGTGCAAATGTGCAGCAACAGCCTGAACATGAAAATGTTCAAGTTCCAGATAATGCAGAGGTGCCCCAAGTCATTCATCAGCAACCACAACTCATTTCTGATAATTTAAGTCAGAATGTCACAATTGATGTGGATGTTGTCATTGGAATGCAGTCACAGACTTCAACCAATATTGTTCATCAACCACAGCCACAAGGTTCCTCCAATCCTGTATTCTCAAGCAGGAGATTCAAGTCACCAGCAAGAAGGATCAAACCAGGAAAGAAGCTTGCAGAAGGTTCTACTTCAGCCACAAACTCTGGGACGGATTCAACAAGGCCCTCATGGAAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

19.36

Weight (kDa)

5.94

Isoelectric Point (pI)

61.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 66, 250
AccB7I CCANNNNNTGG 1 cut(s) 188
AclWI GGATC 1 cut(s) 446
AcsI RAATTY 1 cut(s) 122
AcuI CTGAAG 1 cut(s) 459
AfaI GTAC 2 cut(s) 22, 44
AfiI CCNNNNNNNGG 1 cut(s) 188
AgsI TTSAA 4 cut(s) 230, 354, 421, 501
AjnI CCWGG 2 cut(s) 126, 445
AjuI GAANNNNNNNTTGG 2 cut(s) 386, 418
AluBI AGCT 5 cut(s) 35, 96, 103, 148, 457
AluI AGCT 5 cut(s) 35, 96, 103, 148, 457
Alw21I GWGCWC 2 cut(s) 98, 105
AlwI GGATC 1 cut(s) 446
AoxI GGCC 1 cut(s) 506
ApeKI GCWGC 2 cut(s) 148, 202
ApoI RAATTY 1 cut(s) 122
Asp700I GAANNNNTTC 1 cut(s) 225
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 1 cut(s) 507
AsuHPI GGTGA 1 cut(s) 417
AsuNHI GCTAGC 1 cut(s) 31
BaeGI GKGCMC 1 cut(s) 255
BaeI ACNNNNGTAYC 1 cut(s) 37
BanI GGYRCC 2 cut(s) 66, 250
BanII GRGCYC 2 cut(s) 98, 105
Bbv12I GWGCWC 2 cut(s) 98, 105
BbvI GCAGC 2 cut(s) 135, 214
BccI CCATC 2 cut(s) 155, 182
BciT130I CCWGG 2 cut(s) 128, 447
BfaI CTAG 1 cut(s) 32
BfmI CTRYAG 1 cut(s) 153
BisI GCNGC 2 cut(s) 149, 203
BlsI GCNGC 2 cut(s) 150, 204
Bme1390I CCNGG 2 cut(s) 128, 447
BmgT120I GGNCC 1 cut(s) 507
BmiI GGNNCC 3 cut(s) 68, 252, 388
BmrFI CCNGG 2 cut(s) 128, 447
BmtI GCTAGC 1 cut(s) 35
BpuEI CTTGAG 1 cut(s) 391
BsaAI YACGTR 1 cut(s) 20
Bsc4I CCNNNNNNNGG 1 cut(s) 188
BseBI CCWGG 2 cut(s) 128, 447
BseGI GGATG 1 cut(s) 328
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMII CTCAG 1 cut(s) 90
BseSI GKGCMC 1 cut(s) 255
BseXI GCAGC 2 cut(s) 135, 214
BsgI GTGCAG 1 cut(s) 221
BshFI GGCC 1 cut(s) 508
BshNI GGYRCC 2 cut(s) 66, 250
BsiHKAI GWGCWC 2 cut(s) 98, 105
BslFI GGGAC 1 cut(s) 505
BslI CCNNNNNNNGG 1 cut(s) 188
BsmFI GGGAC 1 cut(s) 505
BsmI GAATGC 2 cut(s) 139, 342
BsnI GGCC 1 cut(s) 508
Bsp1286I GDGCHC 3 cut(s) 98, 105, 255
Bsp143I GATC 1 cut(s) 438
BspANI GGCC 1 cut(s) 508
BspCNI CTCAG 1 cut(s) 91
BspLI GGNNCC 3 cut(s) 68, 252, 388
BspOI GCTAGC 1 cut(s) 35
BspPI GGATC 1 cut(s) 446
BspQI GCTCTTC 1 cut(s) 110
BspT107I GGYRCC 2 cut(s) 66, 250
BssMI GATC 1 cut(s) 438
Bst2UI CCWGG 2 cut(s) 128, 447
Bst6I CTCTTC 1 cut(s) 110
BstBAI YACGTR 1 cut(s) 20
BstC8I GCNNGC 2 cut(s) 33, 459
BstDEI CTNAG 1 cut(s) 99
BstF5I GGATG 1 cut(s) 328
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 1 cut(s) 441
BstMBI GATC 1 cut(s) 438
BstMWI GCNNNNNNNGC 1 cut(s) 208
BstNI CCWGG 2 cut(s) 128, 447
BstSCI CCNGG 2 cut(s) 126, 445
BstSFI CTRYAG 1 cut(s) 153
BstSLI GKGCMC 1 cut(s) 255
BstSNI TACGTA 1 cut(s) 20
BstV1I GCAGC 2 cut(s) 135, 214
BsuRI GGCC 1 cut(s) 508
BtsCI GGATG 1 cut(s) 328
Cac8I GCNNGC 2 cut(s) 33, 459
CfoI GCGC 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 507
Csp6I GTAC 2 cut(s) 21, 43
CspCI CAANNNNNGTGG 2 cut(s) 300, 335
CviAII CATG 2 cut(s) 218, 513
CviJI RGCY 9 cut(s) 35, 96, 103, 148, 211, 379, 457, 479, 508
CviKI_1 RGCY 9 cut(s) 35, 96, 103, 148, 211, 379, 457, 479, 508
CviQI GTAC 2 cut(s) 21, 43
DdeI CTNAG 1 cut(s) 99
DpnI GATC 1 cut(s) 440
DpnII GATC 1 cut(s) 438
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
Ecl136II GAGCTC 2 cut(s) 96, 103
Eco105I TACGTA 1 cut(s) 20
Eco24I GRGCYC 2 cut(s) 98, 105
Eco53kI GAGCTC 2 cut(s) 96, 103
Eco57I CTGAAG 1 cut(s) 459
EcoICRI GAGCTC 2 cut(s) 96, 103
EcoO109I RGGNCCY 1 cut(s) 507
EcoRII CCWGG 2 cut(s) 126, 445
EcoT38I GRGCYC 2 cut(s) 98, 105
FaeI CATG 2 cut(s) 221, 516
FaiI YATR 4 cut(s) 17, 80, 219, 514
FaqI GGGAC 1 cut(s) 505
FatI CATG 2 cut(s) 217, 512
Fnu4HI GCNGC 2 cut(s) 149, 203
FokI GGATG 1 cut(s) 335
FriOI GRGCYC 2 cut(s) 98, 105
Fsp4HI GCNGC 2 cut(s) 149, 203
FspBI CTAG 1 cut(s) 32
GlaI GCGC 1 cut(s) 30
GluI GCNGC 2 cut(s) 149, 203
HaeIII GGCC 1 cut(s) 508
HhaI GCGC 1 cut(s) 31
Hin1II CATG 2 cut(s) 221, 516
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 2 cut(s) 417, 497
HphI GGTGA 1 cut(s) 417
Hpy188I TCNGA 3 cut(s) 100, 289, 303
Hpy188III TCNNGA 1 cut(s) 236
HpyAV CCTTC 2 cut(s) 429, 458
HpyCH4IV ACGT 1 cut(s) 19
HpyCH4V TGCA 6 cut(s) 167, 194, 202, 245, 340, 461
HpyF10VI GCNNNNNNNGC 1 cut(s) 208
HpyF3I CTNAG 1 cut(s) 99
HpySE526I ACGT 1 cut(s) 19
Hsp92II CATG 2 cut(s) 221, 516
HspAI GCGC 1 cut(s) 29
Kzo9I GATC 1 cut(s) 438
LguI GCTCTTC 1 cut(s) 110
Lsp1109I GCAGC 2 cut(s) 135, 214
MaeI CTAG 1 cut(s) 32
MaeII ACGT 1 cut(s) 19
MaeIII GTNAC 4 cut(s) 5, 307, 342, 423
MalI GATC 1 cut(s) 440
MboI GATC 1 cut(s) 438
MboII GAAGA 3 cut(s) 97, 170, 197
MfeI CAATTG 1 cut(s) 312
MhlI GDGCHC 3 cut(s) 98, 105, 255
MluCI AATT 3 cut(s) 122, 292, 312
MnlI CCTC 3 cut(s) 241, 400, 520
MroXI GAANNNNTTC 1 cut(s) 225
MseI TTAA 1 cut(s) 296
MslI CAYNNNNRTG 2 cut(s) 222, 335
MspR9I CCNGG 2 cut(s) 128, 447
MunI CAATTG 1 cut(s) 312
Mva1269I GAATGC 2 cut(s) 139, 342
MvaI CCWGG 2 cut(s) 128, 447
MwoI GCNNNNNNNGC 1 cut(s) 208
NdeII GATC 1 cut(s) 438
NheI GCTAGC 1 cut(s) 31
NlaIII CATG 2 cut(s) 221, 516
NlaIV GGNNCC 3 cut(s) 68, 252, 388
NmuCI GTSAC 4 cut(s) 5, 307, 342, 423
PciSI GCTCTTC 1 cut(s) 110
PctI GAATGC 2 cut(s) 139, 342
PdmI GAANNNNTTC 1 cut(s) 225
PfeI GAWTC 2 cut(s) 417, 497
PflMI CCANNNNNTGG 1 cut(s) 188
PfoI TCCNGGA 1 cut(s) 126
PkrI GCNGC 2 cut(s) 150, 204
Ppu21I YACGTR 1 cut(s) 20
Psp124BI GAGCTC 2 cut(s) 98, 105
Psp6I CCWGG 2 cut(s) 126, 445
PspGI CCWGG 2 cut(s) 126, 445
PspN4I GGNNCC 3 cut(s) 68, 252, 388
PspPI GGNCC 1 cut(s) 507
RsaI GTAC 2 cut(s) 22, 44
RsaNI GTAC 2 cut(s) 21, 43
RseI CAYNNNNRTG 2 cut(s) 222, 335
SacI GAGCTC 2 cut(s) 98, 105
SapI GCTCTTC 1 cut(s) 110
SaqAI TTAA 1 cut(s) 296
SatI GCNGC 2 cut(s) 149, 203
Sau3AI GATC 1 cut(s) 438
Sau96I GGNCC 1 cut(s) 507
ScrFI CCNGG 2 cut(s) 128, 447
SduI GDGCHC 3 cut(s) 98, 105, 255
SetI ASST 9 cut(s) 22, 37, 98, 105, 150, 252, 388, 459, 469
SfcI CTRYAG 1 cut(s) 153
SmiMI CAYNNNNRTG 2 cut(s) 222, 335
SmlI CTYRAG 1 cut(s) 406
SmoI CTYRAG 1 cut(s) 406
SnaBI TACGTA 1 cut(s) 20
Sse9I AATT 3 cut(s) 122, 292, 312
SspI AATATT 1 cut(s) 361
SspMI CTAG 1 cut(s) 32
SstI GAGCTC 2 cut(s) 98, 105
StyD4I CCNGG 2 cut(s) 126, 445
TaiI ACGT 1 cut(s) 22
TasI AATT 3 cut(s) 122, 292, 312
TatI WGTACW 1 cut(s) 42
TfiI GAWTC 2 cut(s) 417, 497
Tru1I TTAA 1 cut(s) 296
Tru9I TTAA 1 cut(s) 296
TseFI GTSAC 4 cut(s) 5, 307, 342, 423
TseI GCWGC 2 cut(s) 148, 202
Tsp45I GTSAC 4 cut(s) 5, 307, 342, 423
TspDTI ATGAA 3 cut(s) 234, 254, 356
TspGWI ACGGA 1 cut(s) 509
Van91I CCANNNNNTGG 1 cut(s) 188
XapI RAATTY 1 cut(s) 122
XmnI GAANNNNTTC 1 cut(s) 225
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.