Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002555

Physical Location & Seq

Genomic Coordinates Reverse (-)

63901832 .. 63903187

Gene Structure 1356 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015275

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCCAACTATTGGCGATATTTTAGGCTGGATGGTGATCCACACTTGGAAGATGATGCAACAAAAAATGTGGAAGATGAGGCCCAAGAGCTTGGTGAAGAGGGGAAACATGAGGTGCAAGAGGGTTCTGAAAATGTGGAAGAGGTTCATATGGATTCTGAAGATGAGTATATGCCAAAAAAGGTGATAAGTGTGCCACAGACTGAGCCAGTTAGAAATGGGCCTGATGAAGCTGCTAGGCTTAATGGGCTTCCCCCACATGAAAGACAAAGAAGAGGCCCACATGGGGTTCATGCTTCGACTTCAAGGAAGATGAAAGATAAAGGGAAGGAGATAGTTGTTGAGGAAGATGACAAGACCCGCCCCGGATTCCACCTTGGAATCCGAAGTGGCCCTGCGGGACCCACTTTTAAAGAAGGCTTACCAAAAATTTCGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

16.41

Weight (kDa)

5.17

Isoelectric Point (pI)

51.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097701 RchiOBHm_Chr6g0292791
rosa_laevigata	RLG00000015275 RLG00000021547 RLG00000030592
rosa_roxburghii	Rroxscaffold_1G00036680 Rroxscaffold_1G00041910 Rroxscaffold_4G00298950
rosa_samantha	Rh1BG038600 Rh1BG413300 Rh1CG442700 Rh1DG446300 Rh2AG239900 Rh2AG454600 Rh2BG458800 Rh2CG329000 Rh2CG441700 Rh2DG247800 Rh3AG319400 Rh3DG074200 Rh3DG253400 Rh4AG134000 Rh4CG324700 Rh4DG018300 Rh5BG409600 Rh5CG361100 Rh5CG434400 Rh5DG243200 Rh6AG347300 Rh6CG028700 Rh6CG148300 Rh6CG361100 Rh6DG027800 Rh7AG187400 Rh7BG242700
rosa_wichuraiana	Rw0G008450 Rw2G012270 Rw4G030630 Rw5G021380 Rw5G046710 Rw6G001850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	12
AciI	CCGC	2 cut(s)	361, 398
AclWI	GGATC	1 cut(s)	32
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	429
AcuI	CTGAAG	1 cut(s)	180
AfiI	CCNNNNNNNGG	2 cut(s)	12, 286
AgsI	TTSAA	1 cut(s)	306
AluBI	AGCT	2 cut(s)	91, 233
AluI	AGCT	2 cut(s)	91, 233
AlwI	GGATC	1 cut(s)	32
AoxI	GGCC	5 cut(s)	3, 81, 221, 277, 391
ApeKI	GCWGC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	429
Asp700I	GAANNNNTTC	1 cut(s)	144
AspS9I	GGNCC	5 cut(s)	82, 221, 278, 392, 401
AsuC2I	CCSGG	1 cut(s)	366
AsuHPI	GGTGA	3 cut(s)	47, 107, 196
AvaII	GGWCC	1 cut(s)	401
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	1 cut(s)	26
BcnI	CCSGG	1 cut(s)	366
BfaI	CTAG	1 cut(s)	237
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
Bme1390I	CCNGG	1 cut(s)	366
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	5 cut(s)	82, 221, 278, 392, 401
BmiI	GGNNCC	2 cut(s)	402, 403
BmrFI	CCNGG	1 cut(s)	366
BmsI	GCATC	1 cut(s)	46
BpuMI	CCSGG	1 cut(s)	366
BsaBI	GATNNNNATC	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	364, 376
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 286
Bse1I	ACTGG	1 cut(s)	209
Bse8I	GATNNNNATC	1 cut(s)	36
BseDI	CCNNGG	2 cut(s)	364, 376
BseGI	GGATG	1 cut(s)	37
BseJI	GATNNNNATC	1 cut(s)	36
BseLI	CCNNNNNNNGG	2 cut(s)	12, 286
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	209
BseXI	GCAGC	1 cut(s)	220
BshFI	GGCC	5 cut(s)	5, 83, 223, 279, 393
BsiSI	CCGG	1 cut(s)	366
BslFI	GGGAC	1 cut(s)	414
BslI	CCNNNNNNNGG	2 cut(s)	12, 286
BsmFI	GGGAC	1 cut(s)	414
BsnI	GGCC	5 cut(s)	5, 83, 223, 279, 393
Bsp143I	GATC	1 cut(s)	37
BspACI	CCGC	2 cut(s)	361, 398
BspANI	GGCC	5 cut(s)	5, 83, 223, 279, 393
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	2 cut(s)	402, 403
BspPI	GGATC	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	209
BssECI	CCNNGG	2 cut(s)	364, 376
BssMI	GATC	1 cut(s)	37
BssT1I	CCWWGG	1 cut(s)	376
Bst6I	CTCTTC	3 cut(s)	93, 135, 268
BstDEI	CTNAG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	37
BstKTI	GATC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	1 cut(s)	247
BstSCI	CCNGG	1 cut(s)	364
BstV1I	GCAGC	1 cut(s)	220
BstXI	CCANNNNNNTGG	1 cut(s)	92
BsuRI	GGCC	5 cut(s)	5, 83, 223, 279, 393
BtsCI	GGATG	1 cut(s)	37
Cfr13I	GGNCC	5 cut(s)	82, 221, 278, 392, 401
CspCI	CAANNNNNGTGG	2 cut(s)	51, 86
CviAII	CATG	4 cut(s)	110, 260, 284, 293
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
DraI	TTTAAA	1 cut(s)	412
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	93, 135, 268
EarI	CTCTTC	3 cut(s)	93, 135, 268
Eco130I	CCWWGG	1 cut(s)	376
Eco47I	GGWCC	1 cut(s)	401
Eco57I	CTGAAG	1 cut(s)	180
EcoO109I	RGGNCCY	1 cut(s)	401
EcoT14I	CCWWGG	1 cut(s)	376
ErhI	CCWWGG	1 cut(s)	376
FaeI	CATG	4 cut(s)	113, 263, 287, 296
FaiI	YATR	9 cut(s)	111, 150, 152, 171, 173, 261, 285, 294, 439
FaqI	GGGAC	1 cut(s)	414
FatI	CATG	4 cut(s)	109, 259, 283, 292
FauI	CCCGC	2 cut(s)	368, 391
FauNDI	CATATG	1 cut(s)	150
Fnu4HI	GCNGC	1 cut(s)	234
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	1 cut(s)	237
GluI	GCNGC	1 cut(s)	234
HaeIII	GGCC	5 cut(s)	5, 83, 223, 279, 393
HapII	CCGG	1 cut(s)	366
Hin1II	CATG	4 cut(s)	113, 263, 287, 296
HinfI	GANTC	3 cut(s)	155, 369, 381
HpaII	CCGG	1 cut(s)	366
HphI	GGTGA	3 cut(s)	47, 107, 196
Hpy188I	TCNGA	3 cut(s)	130, 160, 386
HpyAV	CCTTC	2 cut(s)	322, 410
HpyCH4V	TGCA	2 cut(s)	59, 118
HpyF10VI	GCNNNNNNNGC	1 cut(s)	247
HpyF3I	CTNAG	1 cut(s)	204
Hsp92II	CATG	4 cut(s)	113, 263, 287, 296
KflI	GGGWCCC	1 cut(s)	401
Kzo9I	GATC	1 cut(s)	37
LpnPI	CCDG	5 cut(s)	14, 222, 237, 379, 408
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	1 cut(s)	46
MaeI	CTAG	1 cut(s)	237
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	8 cut(s)	62, 86, 110, 152, 173, 285, 322, 359
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	429
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	7 cut(s)	73, 94, 106, 115, 136, 269, 337
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	144
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	243, 411
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	366
MspR9I	CCNGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	1 cut(s)	247
NciI	CCSGG	1 cut(s)	366
NdeI	CATATG	1 cut(s)	150
NdeII	GATC	1 cut(s)	37
NlaIII	CATG	4 cut(s)	113, 263, 287, 296
NlaIV	GGNNCC	2 cut(s)	402, 403
PdmI	GAANNNNTTC	1 cut(s)	144
PfeI	GAWTC	3 cut(s)	155, 369, 381
PflMI	CCANNNNNTGG	1 cut(s)	12
PkrI	GCNGC	1 cut(s)	235
PpuMI	RGGWCCY	1 cut(s)	401
Psp5II	RGGWCCY	1 cut(s)	401
PspN4I	GGNNCC	2 cut(s)	402, 403
PspPI	GGNCC	5 cut(s)	82, 221, 278, 392, 401
PspPPI	RGGWCCY	1 cut(s)	401
SaqAI	TTAA	2 cut(s)	243, 411
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	5 cut(s)	82, 221, 278, 392, 401
ScrFI	CCNGG	1 cut(s)	366
SetI	ASST	6 cut(s)	93, 117, 147, 186, 235, 378
SfaNI	GCATC	1 cut(s)	46
SinI	GGWCC	1 cut(s)	401
Sse9I	AATT	1 cut(s)	429
SsiI	CCGC	2 cut(s)	361, 398
SspMI	CTAG	1 cut(s)	237
StyD4I	CCNGG	1 cut(s)	364
StyI	CCWWGG	1 cut(s)	376
TaqI	TCGA	1 cut(s)	299
TasI	AATT	1 cut(s)	429
TfiI	GAWTC	3 cut(s)	155, 369, 381
Tru1I	TTAA	2 cut(s)	243, 411
Tru9I	TTAA	2 cut(s)	243, 411
TseI	GCWGC	1 cut(s)	233
TspDTI	ATGAA	5 cut(s)	137, 243, 276, 281, 329
Van91I	CCANNNNNTGG	1 cut(s)	12
VpaK11BI	GGWCC	1 cut(s)	401
XapI	RAATTY	1 cut(s)	429
XmnI	GAANNNNTTC	1 cut(s)	144
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.