Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002555

Physical Location & Seq

Genomic Coordinates Forward (+)

2500507 .. 2512552

Gene Structure 12046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG027800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGATGTTGGATAAGACAAACATCTCAAAAAATGTGGAAGATGAGGCCCAGGAGGCCAAAGATTTTGGTGAAGATGGGGAACAGGAGGTGCAAGAAGGTTCTGAAAATGTGGAAGAAGAGGTTCATGTGGATTCTGAAGATGAGTGTATGCCAGAAGAGGTGATAAGTGTGCCACATACCCGGCCAGTTAGAAATGGGCCTGATGAAGTTGCTAGGCCTAATGGGCTTCCCCCACAGGAAAGACAAAGAAGAGGCCCACATGGTAGTCATGCTTCGACTTCAAGGAAGATTAAAGATAAAGGGAAGGAGAAAGTTGTTGAGGAAGAGGAGAATGGTGAAAATGAGCTGCCTCCAGAAGATGGTGCAAATGTCCTCCCTCCAGTTCATGGTGAAAATGTGATCCCTCCAGAAGATGATGCAAATGTGCAGCAGCAACCTGAAATTAGGGAAGTTCAAGTTCCAGAAAATGCAGAGGTGCCCCAGGTCATTCATCAGCAACCACAAGTCATTTCTGAGAATTTTAGTGAAAATGTGACAATTGATGTGGAACTCGTCACTGGAATGCAATCACAAACTTCAACAAATACTGTATTGCAACCACAGCGGAGTAACGTAGCTATCAATATTTTCAAGTTACGAGGATGGCGAATATGTGGCTTATTTGATAAAGAAAAAAATCTTATGATCCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

230

Amino Acids

25.82

Weight (kDa)

4.53

Isoelectric Point (pI)

62.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097701 RchiOBHm_Chr6g0292791
rosa_laevigata	RLG00000015275 RLG00000021547 RLG00000030592
rosa_roxburghii	Rroxscaffold_1G00036680 Rroxscaffold_1G00041910 Rroxscaffold_4G00298950
rosa_samantha	Rh1BG038600 Rh1BG413300 Rh1CG442700 Rh1DG446300 Rh2AG239900 Rh2AG454600 Rh2BG458800 Rh2CG329000 Rh2CG441700 Rh2DG247800 Rh3AG319400 Rh3DG074200 Rh3DG253400 Rh4AG134000 Rh4CG324700 Rh4DG018300 Rh5BG409600 Rh5CG361100 Rh5CG434400 Rh5DG243200 Rh6AG347300 Rh6CG028700 Rh6CG148300 Rh6CG361100 Rh6DG027800 Rh7AG187400 Rh7BG242700
rosa_wichuraiana	Rw0G008450 Rw2G012270 Rw4G030630 Rw5G021380 Rw5G046710 Rw6G001850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	475
AccB7I	CCANNNNNTGG	2 cut(s)	359, 386
AciI	CCGC	1 cut(s)	604
AclWI	GGATC	2 cut(s)	394, 679
AcoI	YGGCCR	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	517
AcuI	CTGAAG	1 cut(s)	156
AfiI	CCNNNNNNNGG	2 cut(s)	359, 386
AgsI	TTSAA	4 cut(s)	282, 455, 579, 631
AjnI	CCWGG	2 cut(s)	48, 480
AluBI	AGCT	2 cut(s)	346, 617
AluI	AGCT	2 cut(s)	346, 617
AlwI	GGATC	2 cut(s)	394, 679
AoxI	GGCC	6 cut(s)	45, 54, 182, 197, 215, 253
ApeKI	GCWGC	3 cut(s)	346, 427, 430
ApoI	RAATTY	1 cut(s)	517
Asp700I	GAANNNNTTC	1 cut(s)	120
AspS9I	GGNCC	3 cut(s)	46, 197, 254
AsuC2I	CCSGG	1 cut(s)	181
AsuHPI	GGTGA	4 cut(s)	80, 172, 347, 401
BaeGI	GKGCMC	1 cut(s)	480
BanI	GGYRCC	1 cut(s)	475
BarI	GAAGNNNNNNTAC	2 cut(s)	256, 288
BbvI	GCAGC	3 cut(s)	333, 439, 442
BccI	CCATC	3 cut(s)	68, 353, 636
BciT130I	CCWGG	2 cut(s)	50, 482
BcnI	CCSGG	1 cut(s)	181
BfaI	CTAG	1 cut(s)	213
BglI	GCCNNNNNGGC	2 cut(s)	53, 223
BisI	GCNGC	3 cut(s)	347, 428, 431
BlsI	GCNGC	3 cut(s)	348, 429, 432
Bme1390I	CCNGG	3 cut(s)	50, 181, 482
BmgT120I	GGNCC	3 cut(s)	46, 197, 254
BmiI	GGNNCC	1 cut(s)	477
BmrFI	CCNGG	3 cut(s)	50, 181, 482
BmsI	GCATC	1 cut(s)	406
BpmI	CTGGAG	3 cut(s)	336, 363, 390
BpuMI	CCSGG	1 cut(s)	181
BsaJI	CCNNGG	2 cut(s)	48, 480
Bsc4I	CCNNNNNNNGG	2 cut(s)	359, 386
Bse1I	ACTGG	3 cut(s)	185, 380, 562
BseBI	CCWGG	2 cut(s)	50, 482
BseDI	CCNNGG	2 cut(s)	48, 480
BseGI	GGATG	1 cut(s)	647
BseLI	CCNNNNNNNGG	2 cut(s)	359, 386
BseMII	CTCAG	1 cut(s)	504
BseNI	ACTGG	3 cut(s)	185, 380, 562
BseRI	GAGGAG	1 cut(s)	341
BseSI	GKGCMC	1 cut(s)	480
BseXI	GCAGC	3 cut(s)	333, 439, 442
BsgI	GTGCAG	1 cut(s)	446
BshFI	GGCC	6 cut(s)	47, 56, 184, 199, 217, 255
BshNI	GGYRCC	1 cut(s)	475
BsiSI	CCGG	1 cut(s)	181
BslI	CCNNNNNNNGG	2 cut(s)	359, 386
BsmI	GAATGC	1 cut(s)	567
BsnI	GGCC	6 cut(s)	47, 56, 184, 199, 217, 255
Bsp1286I	GDGCHC	1 cut(s)	480
Bsp143I	GATC	2 cut(s)	399, 684
BspACI	CCGC	1 cut(s)	604
BspANI	GGCC	6 cut(s)	47, 56, 184, 199, 217, 255
BspCNI	CTCAG	1 cut(s)	505
BspLI	GGNNCC	1 cut(s)	477
BspPI	GGATC	2 cut(s)	394, 679
BspT107I	GGYRCC	1 cut(s)	475
BsrI	ACTGG	3 cut(s)	185, 380, 562
BssECI	CCNNGG	2 cut(s)	48, 480
BssMI	GATC	2 cut(s)	399, 684
Bst2UI	CCWGG	2 cut(s)	50, 482
Bst4CI	ACNGT	1 cut(s)	589
Bst6I	CTCTTC	4 cut(s)	111, 150, 244, 318
BstDEI	CTNAG	1 cut(s)	513
BstF5I	GGATG	1 cut(s)	647
BstKTI	GATC	2 cut(s)	402, 687
BstMBI	GATC	2 cut(s)	399, 684
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 223, 601
BstNI	CCWGG	2 cut(s)	50, 482
BstSCI	CCNGG	3 cut(s)	48, 179, 480
BstSLI	GKGCMC	1 cut(s)	480
BstV1I	GCAGC	3 cut(s)	333, 439, 442
BsuRI	GGCC	6 cut(s)	47, 56, 184, 199, 217, 255
BtsCI	GGATG	1 cut(s)	647
BtsIMutI	CAGTG	1 cut(s)	555
Cfr13I	GGNCC	3 cut(s)	46, 197, 254
CspCI	CAANNNNNGTGG	4 cut(s)	15, 50, 525, 560
CviAII	CATG	4 cut(s)	125, 260, 269, 386
DdeI	CTNAG	1 cut(s)	513
DpnI	GATC	2 cut(s)	401, 686
DpnII	GATC	2 cut(s)	399, 684
EaeI	YGGCCR	1 cut(s)	182
Eam1104I	CTCTTC	4 cut(s)	111, 150, 244, 318
EarI	CTCTTC	4 cut(s)	111, 150, 244, 318
Eco147I	AGGCCT	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	156
EcoRII	CCWGG	2 cut(s)	48, 480
FaeI	CATG	4 cut(s)	128, 263, 272, 389
FaiI	YATR	8 cut(s)	126, 149, 177, 261, 270, 387, 652, 683
FatI	CATG	4 cut(s)	124, 259, 268, 385
Fnu4HI	GCNGC	3 cut(s)	347, 428, 431
FokI	GGATG	1 cut(s)	654
Fsp4HI	GCNGC	3 cut(s)	347, 428, 431
FspBI	CTAG	1 cut(s)	213
GluI	GCNGC	3 cut(s)	347, 428, 431
GsuI	CTGGAG	3 cut(s)	336, 363, 390
HaeIII	GGCC	6 cut(s)	47, 56, 184, 199, 217, 255
HapII	CCGG	1 cut(s)	181
Hin1II	CATG	4 cut(s)	128, 263, 272, 389
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	1 cut(s)	181
HphI	GGTGA	4 cut(s)	80, 172, 347, 401
Hpy188I	TCNGA	3 cut(s)	103, 136, 514
Hpy188III	TCNNGA	3 cut(s)	353, 407, 461
HpyAV	CCTTC	2 cut(s)	89, 298
HpyCH4III	ACNGT	1 cut(s)	589
HpyCH4IV	ACGT	1 cut(s)	612
HpyCH4V	TGCA	7 cut(s)	91, 365, 419, 427, 470, 565, 595
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 223, 601
HpyF3I	CTNAG	1 cut(s)	513
HpySE526I	ACGT	1 cut(s)	612
Hsp92II	CATG	4 cut(s)	128, 263, 272, 389
Kzo9I	GATC	2 cut(s)	399, 684
Lsp1109I	GCAGC	3 cut(s)	333, 439, 442
LweI	GCATC	1 cut(s)	406
MaeI	CTAG	1 cut(s)	213
MaeII	ACGT	1 cut(s)	612
MaeIII	GTNAC	4 cut(s)	532, 553, 608, 633
MalI	GATC	2 cut(s)	401, 686
MboI	GATC	2 cut(s)	399, 684
MfeI	CAATTG	1 cut(s)	537
MhlI	GDGCHC	1 cut(s)	480
MluCI	AATT	3 cut(s)	441, 517, 537
MroXI	GAANNNNTTC	1 cut(s)	120
MseI	TTAA	1 cut(s)	291
MslI	CAYNNNNRTG	1 cut(s)	560
MspA1I	CMGCKG	1 cut(s)	604
MspI	CCGG	1 cut(s)	181
MspR9I	CCNGG	3 cut(s)	50, 181, 482
MunI	CAATTG	1 cut(s)	537
Mva1269I	GAATGC	1 cut(s)	567
MvaI	CCWGG	2 cut(s)	50, 482
MwoI	GCNNNNNNNGC	3 cut(s)	53, 223, 601
NciI	CCSGG	1 cut(s)	181
NdeII	GATC	2 cut(s)	399, 684
NlaIII	CATG	4 cut(s)	128, 263, 272, 389
NlaIV	GGNNCC	1 cut(s)	477
NmuCI	GTSAC	2 cut(s)	532, 553
PceI	AGGCCT	1 cut(s)	217
PcsI	WCGNNNNNNNCGW	1 cut(s)	643
PctI	GAATGC	1 cut(s)	567
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	131
PflMI	CCANNNNNTGG	2 cut(s)	359, 386
PkrI	GCNGC	3 cut(s)	348, 429, 432
Psp6I	CCWGG	2 cut(s)	48, 480
PspGI	CCWGG	2 cut(s)	48, 480
PspN4I	GGNNCC	1 cut(s)	477
PspPI	GGNCC	3 cut(s)	46, 197, 254
RseI	CAYNNNNRTG	1 cut(s)	560
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	3 cut(s)	347, 428, 431
Sau3AI	GATC	2 cut(s)	399, 684
Sau96I	GGNCC	3 cut(s)	46, 197, 254
ScrFI	CCNGG	3 cut(s)	50, 181, 482
SduI	GDGCHC	1 cut(s)	480
SfaNI	GCATC	1 cut(s)	406
SfiI	GGCCNNNNNGGCC	1 cut(s)	53
SmiMI	CAYNNNNRTG	1 cut(s)	560
Sse9I	AATT	3 cut(s)	441, 517, 537
SseBI	AGGCCT	1 cut(s)	217
SsiI	CCGC	1 cut(s)	604
SspI	AATATT	1 cut(s)	625
SspMI	CTAG	1 cut(s)	213
StuI	AGGCCT	1 cut(s)	217
StyD4I	CCNGG	3 cut(s)	48, 179, 480
TaaI	ACNGT	1 cut(s)	589
TaiI	ACGT	1 cut(s)	615
TaqI	TCGA	1 cut(s)	275
TasI	AATT	3 cut(s)	441, 517, 537
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	1 cut(s)	562
TseFI	GTSAC	2 cut(s)	532, 553
TseI	GCWGC	3 cut(s)	346, 427, 430
Tsp45I	GTSAC	2 cut(s)	532, 553
TspDTI	ATGAA	4 cut(s)	113, 219, 374, 479
TspGWI	ACGGA	1 cut(s)	677
TspRI	CASTG	1 cut(s)	562
Van91I	CCANNNNNTGG	2 cut(s)	359, 386
XapI	RAATTY	1 cut(s)	517
XmnI	GAANNNNTTC	1 cut(s)	120
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.