Rw5G021380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0002555
Physical Location & Seq
Forward (+)
28757456 .. 28760206
2751 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G021380.1

Sequence Viewer

Length: 432 bp
ATGCCAAAGGATGTGGATGGTGAAATGGAGCCAGTGGATGTAGATCCACTAGATGTAGATGATGATGAAGAGGTTCCTTTGGATGGAATTATGCCTGAAAACTGGGAATATACTGATGATGAGCCTGAAGTGCAAAGCAATGGTCCAGAAATGAGTGAAGCTGCTAATGGGCCTGAAGTGCAGAGTGGTGGTCCACAGTCAACTGAAGGCAATGGGCTTAGAGTTGGAGCTCAAGCCCGTGGCCCAACTATTACAACTGCAAGAGGCAGAGATCATCAGGCATCCACTTCAAGACAAAAAGATAAAGGGAAGCAGAAAGTTGTAGAGGAAGAAGTTTGTGTTCCAAAGAAAAAGTGTGGTAGGCCGAAACAAAGGGGCACTAGGAGGGGAATGTGGAGAATGAGCAAATGCAGGGGAATGGGGGAGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.71

Weight (kDa)

4.79

Isoelectric Point (pI)

48.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 38
AcuI CTGAAG 3 cut(s) 147, 195, 225
AfiI CCNNNNNNNGG 1 cut(s) 83
AgsI TTSAA 1 cut(s) 291
AluBI AGCT 3 cut(s) 161, 230, 427
AluI AGCT 3 cut(s) 161, 230, 427
Alw21I GWGCWC 1 cut(s) 232
AlwI GGATC 1 cut(s) 38
AoxI GGCC 3 cut(s) 170, 241, 362
ApeKI GCWGC 1 cut(s) 161
ArsI GACNNNNNNTTYG 2 cut(s) 127, 159
Asp700I GAANNNNTTC 1 cut(s) 72
AspS9I GGNCC 4 cut(s) 143, 170, 191, 242
AsuHPI GGTGA 1 cut(s) 32
AvaII GGWCC 2 cut(s) 143, 191
BaeGI GKGCMC 1 cut(s) 380
BanII GRGCYC 1 cut(s) 232
Bbv12I GWGCWC 1 cut(s) 232
BbvI GCAGC 1 cut(s) 148
BccI CCATC 2 cut(s) 11, 77
BfaI CTAG 2 cut(s) 50, 381
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
Bme18I GGWCC 2 cut(s) 143, 191
BmgT120I GGNCC 4 cut(s) 143, 170, 191, 242
BmiI GGNNCC 2 cut(s) 30, 75
BmrI ACTGGG 1 cut(s) 112
BmsI GCATC 1 cut(s) 290
BmuI ACTGGG 1 cut(s) 112
BpuEI CTTGAG 1 cut(s) 216
BsaBI GATNNNNATC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 238
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 32, 107
Bse3DI GCAATG 2 cut(s) 145, 217
Bse8I GATNNNNATC 1 cut(s) 42
BseDI CCNNGG 1 cut(s) 238
BseGI GGATG 5 cut(s) 16, 22, 43, 88, 281
BseJI GATNNNNATC 1 cut(s) 42
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMI GCAATG 2 cut(s) 145, 217
BseNI ACTGG 2 cut(s) 32, 107
BseSI GKGCMC 1 cut(s) 380
BseXI GCAGC 1 cut(s) 148
BsgI GTGCAG 1 cut(s) 200
BshFI GGCC 3 cut(s) 172, 243, 364
BsiHKAI GWGCWC 1 cut(s) 232
BslI CCNNNNNNNGG 1 cut(s) 83
BsnI GGCC 3 cut(s) 172, 243, 364
Bsp1286I GDGCHC 2 cut(s) 232, 380
Bsp143I GATC 2 cut(s) 43, 271
BspANI GGCC 3 cut(s) 172, 243, 364
BspLI GGNNCC 2 cut(s) 30, 75
BspPI GGATC 1 cut(s) 38
BsrDI GCAATG 2 cut(s) 145, 217
BsrI ACTGG 2 cut(s) 32, 107
BssECI CCNNGG 1 cut(s) 238
BssMI GATC 2 cut(s) 43, 271
Bst4CI ACNGT 1 cut(s) 198
Bst6I CTCTTC 1 cut(s) 63
BstDEI CTNAG 1 cut(s) 218
BstDSI CCRYGG 1 cut(s) 238
BstF5I GGATG 5 cut(s) 16, 22, 43, 88, 281
BstKTI GATC 2 cut(s) 46, 274
BstMBI GATC 2 cut(s) 43, 271
BstMWI GCNNNNNNNGC 2 cut(s) 130, 178
BstSLI GKGCMC 1 cut(s) 380
BstV1I GCAGC 1 cut(s) 148
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
BsuRI GGCC 3 cut(s) 172, 243, 364
BtgI CCRYGG 1 cut(s) 238
BtsCI GGATG 5 cut(s) 16, 22, 43, 88, 281
BtsIMutI CAGTG 1 cut(s) 39
Cfr13I GGNCC 4 cut(s) 143, 170, 191, 242
CspCI CAANNNNNGTGG 1 cut(s) 29
DdeI CTNAG 1 cut(s) 218
DpnI GATC 2 cut(s) 45, 273
DpnII GATC 2 cut(s) 43, 271
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Ecl136II GAGCTC 1 cut(s) 230
Eco24I GRGCYC 1 cut(s) 232
Eco47I GGWCC 2 cut(s) 143, 191
Eco53kI GAGCTC 1 cut(s) 230
Eco57I CTGAAG 3 cut(s) 147, 195, 225
EcoICRI GAGCTC 1 cut(s) 230
EcoT38I GRGCYC 1 cut(s) 232
FaiI YATR 2 cut(s) 92, 111
Fnu4HI GCNGC 1 cut(s) 162
FokI GGATG 5 cut(s) 23, 29, 50, 95, 268
FriOI GRGCYC 1 cut(s) 232
Fsp4HI GCNGC 1 cut(s) 162
FspBI CTAG 2 cut(s) 50, 381
GluI GCNGC 1 cut(s) 162
HaeIII GGCC 3 cut(s) 172, 243, 364
HincII GTYRAC 1 cut(s) 201
HindII GTYRAC 1 cut(s) 201
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 2 cut(s) 194, 201
Hpy188III TCNNGA 2 cut(s) 146, 291
Hpy8I GTNNAC 2 cut(s) 194, 201
HpyAV CCTTC 1 cut(s) 200
HpyCH4III ACNGT 1 cut(s) 198
HpyCH4V TGCA 4 cut(s) 133, 181, 260, 411
HpyF10VI GCNNNNNNNGC 2 cut(s) 130, 178
HpyF3I CTNAG 1 cut(s) 218
Kzo9I GATC 2 cut(s) 43, 271
LmnI GCTCC 3 cut(s) 28, 227, 424
LpnPI CCDG 8 cut(s) 45, 88, 108, 138, 159, 186, 263, 397
Lsp1109I GCAGC 1 cut(s) 148
LweI GCATC 1 cut(s) 290
MaeI CTAG 2 cut(s) 50, 381
MalI GATC 2 cut(s) 45, 273
MboI GATC 2 cut(s) 43, 271
MboII GAAGA 2 cut(s) 80, 341
MflI RGATCY 1 cut(s) 43
MhlI GDGCHC 2 cut(s) 232, 380
MluCI AATT 1 cut(s) 87
MmeI TCCRAC 1 cut(s) 205
MnlI CCTC 4 cut(s) 64, 257, 319, 378
MroXI GAANNNNTTC 1 cut(s) 72
MwoI GCNNNNNNNGC 2 cut(s) 130, 178
NdeII GATC 2 cut(s) 43, 271
NlaIV GGNNCC 2 cut(s) 30, 75
PdmI GAANNNNTTC 1 cut(s) 72
PkrI GCNGC 1 cut(s) 163
Psp124BI GAGCTC 1 cut(s) 232
PspN4I GGNNCC 2 cut(s) 30, 75
PspPI GGNCC 4 cut(s) 143, 170, 191, 242
PsuI RGATCY 1 cut(s) 43
SacI GAGCTC 1 cut(s) 232
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 2 cut(s) 43, 271
Sau96I GGNCC 4 cut(s) 143, 170, 191, 242
SduI GDGCHC 2 cut(s) 232, 380
SetI ASST 4 cut(s) 75, 163, 232, 429
SfaNI GCATC 1 cut(s) 290
SinI GGWCC 2 cut(s) 143, 191
SmlI CTYRAG 1 cut(s) 231
SmoI CTYRAG 1 cut(s) 231
Sse9I AATT 1 cut(s) 87
SspMI CTAG 2 cut(s) 50, 381
SstI GAGCTC 1 cut(s) 232
TaaI ACNGT 1 cut(s) 198
TasI AATT 1 cut(s) 87
TscAI CASTG 1 cut(s) 39
TseI GCWGC 1 cut(s) 161
TspDTI ATGAA 1 cut(s) 81
TspRI CASTG 1 cut(s) 39
VpaK11BI GGWCC 2 cut(s) 143, 191
XmnI GAANNNNTTC 1 cut(s) 72
XspI CTAG 2 cut(s) 50, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.