Rh2AG239900

Vesicle-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002555
Physical Location & Seq
Forward (+)
26158978 .. 26165328
6351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG239900.1

Sequence Viewer

Length: 819 bp
ATGATTGATCATGATGTTTCCCAGCACCAGTACCCTCGCGGCCACGCCTTGGTGGCTAGTGCTTTTGCATTCTCTCTTGGACTCGTCTATGGAAACATTAAGAATGCTCAGGGTCTTCAAGTGTTTAGGTTTGTGGAACAACCTGACAGCAATGAGAAAATTCTGGATCAAAAGACCAAAGTCAAGTTCCAAATTATGAGTCTGAAGGTCAAAGCTGAAACAGACTATGCTCCTGAGCTGTTTGATCACTTGATGAGCAAAATGATCAAAGTAGCAGTTGAGCGAATTTTGCGGGTTGTATTTTTAGATGCAGAGCACCCTACTCCTGTGCAAGAGGGTTCTGAAAATGTGGAAGAAGAGGTTCATATGGATTCTGAAGATGAGTATATGCCAGAAGAGGAGAATGGTGAAAATGAGCTGCCTCCAGAAGATGGTGCAAATGTCCTGCCTCCAGTTCATGGTGAAAATGTGTTCCCTCCAGAAGATGCTGCAAATATGCAGCAACAGCCTGAAATGGAAGTTCAAGTTCCAGAAAATGCAGAGGTGCCCCAGGTCATTCATCAGCAATCACAAGTCATTTCTGAGAATTTTAGTGACAATGTGACAATTGATGTGGAACTTGTCACTGGAATGCATTCACAAACTTCAACAAATATTGCATTGCAACCACAGCCACAAGGTGCCTCCAAGTTAGTATTCTCAGGAAAGAGATTCAAGTCACCAGCAAGAAGGATCAAACCAGGAAAGAAGCCTACAGACGGATCTAGTTCTGCCACAAGCTCTGGGACTAATTCAAGAAAGCCCACATGGAAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0016020 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Motile_Sperm

Protein Analysis

272

Amino Acids

30.33

Weight (kDa)

4.97

Isoelectric Point (pI)

58.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 544, 680
AccB7I CCANNNNNTGG 3 cut(s) 49, 431, 458
AccII CGCG 1 cut(s) 39
AciI CCGC 2 cut(s) 39, 292
AclWI GGATC 3 cut(s) 174, 740, 769
AcoI YGGCCR 1 cut(s) 40
AcsI RAATTY 3 cut(s) 159, 285, 586
AcuI CTGAAG 2 cut(s) 224, 396
AdeI CACNNNGTG 1 cut(s) 680
AfaI GTAC 2 cut(s) 32, 815
AfiI CCNNNNNNNGG 4 cut(s) 49, 431, 458, 758
AgsI TTSAA 5 cut(s) 119, 524, 648, 715, 795
AjnI CCWGG 2 cut(s) 549, 739
AjuI GAANNNNNNNTTGG 4 cut(s) 170, 202, 680, 712
AluBI AGCT 4 cut(s) 215, 238, 418, 780
AluI AGCT 4 cut(s) 215, 238, 418, 780
Alw21I GWGCWC 1 cut(s) 318
AlwI GGATC 3 cut(s) 174, 740, 769
AoxI GGCC 1 cut(s) 40
ApeKI GCWGC 3 cut(s) 418, 488, 499
ApoI RAATTY 3 cut(s) 159, 285, 586
ArsI GACNNNNNNTTYG 2 cut(s) 184, 216
Asp700I GAANNNNTTC 2 cut(s) 360, 634
AsuHPI GGTGA 3 cut(s) 419, 473, 711
BaeGI GKGCMC 1 cut(s) 549
BanI GGYRCC 2 cut(s) 544, 680
BbsI GAAGAC 1 cut(s) 107
Bbv12I GWGCWC 1 cut(s) 318
BbvI GCAGC 3 cut(s) 405, 475, 511
BccI CCATC 1 cut(s) 425
BciT130I CCWGG 2 cut(s) 551, 741
BclI TGATCA 3 cut(s) 7, 244, 264
BfaI CTAG 2 cut(s) 57, 765
BfmI CTRYAG 1 cut(s) 753
BglI GCCNNNNNGGC 1 cut(s) 53
BisI GCNGC 4 cut(s) 40, 419, 489, 500
BlsI GCNGC 4 cut(s) 41, 420, 490, 501
BmcAI AGTACT 1 cut(s) 815
Bme1390I CCNGG 2 cut(s) 551, 741
BmiI GGNNCC 2 cut(s) 546, 682
BmrFI CCNGG 2 cut(s) 551, 741
BmsI GCATC 2 cut(s) 298, 475
BoxI GACNNNNGTC 1 cut(s) 179
BpiI GAAGAC 1 cut(s) 107
BpmI CTGGAG 3 cut(s) 408, 435, 462
Bpu10I CCTNAGC 2 cut(s) 108, 234
BsaJI CCNNGG 2 cut(s) 48, 549
Bsc4I CCNNNNNNNGG 4 cut(s) 49, 431, 458, 758
Bse1I ACTGG 3 cut(s) 28, 452, 631
Bse3DI GCAATG 2 cut(s) 157, 659
BseBI CCWGG 2 cut(s) 551, 741
BseDI CCNNGG 2 cut(s) 48, 549
BseLI CCNNNNNNNGG 4 cut(s) 49, 431, 458, 758
BseMI GCAATG 2 cut(s) 157, 659
BseMII CTCAG 4 cut(s) 122, 225, 573, 714
BseNI ACTGG 3 cut(s) 28, 452, 631
BseRI GAGGAG 1 cut(s) 413
BseSI GKGCMC 1 cut(s) 549
BseXI GCAGC 3 cut(s) 405, 475, 511
BseYI CCCAGC 1 cut(s) 21
Bsh1236I CGCG 1 cut(s) 39
BshFI GGCC 1 cut(s) 42
BshNI GGYRCC 2 cut(s) 544, 680
BsiHKAI GWGCWC 1 cut(s) 318
BslFI GGGAC 1 cut(s) 799
BslI CCNNNNNNNGG 4 cut(s) 49, 431, 458, 758
BsmFI GGGAC 1 cut(s) 799
BsmI GAATGC 4 cut(s) 68, 109, 634, 636
BsnI GGCC 1 cut(s) 42
Bsp1286I GDGCHC 2 cut(s) 318, 549
Bsp143I GATC 6 cut(s) 7, 166, 244, 264, 732, 761
BspACI CCGC 2 cut(s) 39, 292
BspANI GGCC 1 cut(s) 42
BspCNI CTCAG 4 cut(s) 121, 226, 574, 713
BspFNI CGCG 1 cut(s) 39
BspHI TCATGA 1 cut(s) 10
BspLI GGNNCC 2 cut(s) 546, 682
BspPI GGATC 3 cut(s) 174, 740, 769
BspT107I GGYRCC 2 cut(s) 544, 680
BsrDI GCAATG 2 cut(s) 157, 659
BsrI ACTGG 3 cut(s) 28, 452, 631
BssECI CCNNGG 2 cut(s) 48, 549
BssMI GATC 6 cut(s) 7, 166, 244, 264, 732, 761
BssT1I CCWWGG 1 cut(s) 48
Bst2UI CCWGG 2 cut(s) 551, 741
Bst6I CTCTTC 2 cut(s) 351, 390
BstDEI CTNAG 4 cut(s) 108, 234, 582, 700
BstFNI CGCG 1 cut(s) 39
BstKTI GATC 6 cut(s) 10, 169, 247, 267, 735, 764
BstMBI GATC 6 cut(s) 7, 166, 244, 264, 732, 761
BstMWI GCNNNNNNNGC 4 cut(s) 53, 289, 505, 670
BstNI CCWGG 2 cut(s) 551, 741
BstPAI GACNNNNGTC 1 cut(s) 179
BstSCI CCNGG 2 cut(s) 549, 739
BstSFI CTRYAG 1 cut(s) 753
BstSLI GKGCMC 1 cut(s) 549
BstUI CGCG 1 cut(s) 39
BstV1I GCAGC 3 cut(s) 405, 475, 511
BstV2I GAAGAC 1 cut(s) 107
BstX2I RGATCY 1 cut(s) 761
BstYI RGATCY 1 cut(s) 761
BsuRI GGCC 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 624
CciI TCATGA 1 cut(s) 10
Csp6I GTAC 2 cut(s) 31, 814
CspCI CAANNNNNGTGG 2 cut(s) 594, 629
CviAII CATG 3 cut(s) 11, 458, 807
CviQI GTAC 2 cut(s) 31, 814
DdeI CTNAG 4 cut(s) 108, 234, 582, 700
DpnI GATC 6 cut(s) 9, 168, 246, 266, 734, 763
DpnII GATC 6 cut(s) 7, 166, 244, 264, 732, 761
DraIII CACNNNGTG 1 cut(s) 680
EaeI YGGCCR 1 cut(s) 40
Eam1104I CTCTTC 2 cut(s) 351, 390
EarI CTCTTC 2 cut(s) 351, 390
Eco130I CCWWGG 1 cut(s) 48
Eco57I CTGAAG 2 cut(s) 224, 396
EcoRII CCWGG 2 cut(s) 549, 739
EcoT14I CCWWGG 1 cut(s) 48
EcoT22I ATGCAT 1 cut(s) 636
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 3 cut(s) 14, 461, 810
FaqI GGGAC 1 cut(s) 799
FatI CATG 3 cut(s) 10, 457, 806
FauI CCCGC 1 cut(s) 285
FauNDI CATATG 1 cut(s) 366
FbaI TGATCA 3 cut(s) 7, 244, 264
Fnu4HI GCNGC 4 cut(s) 40, 419, 489, 500
Fsp4HI GCNGC 4 cut(s) 40, 419, 489, 500
FspBI CTAG 2 cut(s) 57, 765
GluI GCNGC 4 cut(s) 40, 419, 489, 500
GsaI CCCAGC 1 cut(s) 25
GsuI CTGGAG 3 cut(s) 408, 435, 462
HaeIII GGCC 1 cut(s) 42
Hin1II CATG 3 cut(s) 14, 461, 810
HinfI GANTC 4 cut(s) 81, 199, 371, 711
HphI GGTGA 3 cut(s) 419, 473, 711
Hpy188I TCNGA 4 cut(s) 204, 343, 376, 583
Hpy188III TCNNGA 8 cut(s) 11, 164, 233, 425, 479, 530, 702, 795
HpyAV CCTTC 2 cut(s) 199, 723
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 289, 505, 670
HpyF3I CTNAG 4 cut(s) 108, 234, 582, 700
Hsp92II CATG 3 cut(s) 14, 461, 810
Ksp22I TGATCA 3 cut(s) 7, 244, 264
Kzo9I GATC 6 cut(s) 7, 166, 244, 264, 732, 761
LmnI GCTCC 1 cut(s) 235
Lsp1109I GCAGC 3 cut(s) 405, 475, 511
LweI GCATC 2 cut(s) 298, 475
MaeI CTAG 2 cut(s) 57, 765
MaeIII GTNAC 4 cut(s) 593, 601, 622, 717
MalI GATC 6 cut(s) 9, 168, 246, 266, 734, 763
MboI GATC 6 cut(s) 7, 166, 244, 264, 732, 761
MboII GAAGA 7 cut(s) 107, 365, 368, 389, 407, 440, 494
MfeI CAATTG 1 cut(s) 606
MflI RGATCY 1 cut(s) 761
MhlI GDGCHC 2 cut(s) 318, 549
MluCI AATT 6 cut(s) 159, 192, 285, 586, 606, 790
MlyI GAGTC 2 cut(s) 75, 208
MnlI CCTC 9 cut(s) 45, 328, 352, 391, 432, 459, 486, 535, 694
Mph1103I ATGCAT 1 cut(s) 636
MroXI GAANNNNTTC 2 cut(s) 360, 634
MseI TTAA 1 cut(s) 99
MslI CAYNNNNRTG 1 cut(s) 629
MspR9I CCNGG 2 cut(s) 551, 741
MunI CAATTG 1 cut(s) 606
Mva1269I GAATGC 4 cut(s) 68, 109, 634, 636
MvaI CCWGG 2 cut(s) 551, 741
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 4 cut(s) 53, 289, 505, 670
NdeI CATATG 1 cut(s) 366
NdeII GATC 6 cut(s) 7, 166, 244, 264, 732, 761
NlaIII CATG 3 cut(s) 14, 461, 810
NlaIV GGNNCC 2 cut(s) 546, 682
NmuCI GTSAC 4 cut(s) 593, 601, 622, 717
NsiI ATGCAT 1 cut(s) 636
PagI TCATGA 1 cut(s) 10
PctI GAATGC 4 cut(s) 68, 109, 634, 636
PdmI GAANNNNTTC 2 cut(s) 360, 634
PfeI GAWTC 2 cut(s) 371, 711
PflMI CCANNNNNTGG 3 cut(s) 49, 431, 458
PkrI GCNGC 4 cut(s) 41, 420, 490, 501
PleI GAGTC 2 cut(s) 75, 207
PpsI GAGTC 2 cut(s) 75, 207
PshAI GACNNNNGTC 1 cut(s) 179
Psp6I CCWGG 2 cut(s) 549, 739
PspFI CCCAGC 1 cut(s) 21
PspGI CCWGG 2 cut(s) 549, 739
PspN4I GGNNCC 2 cut(s) 546, 682
PsuI RGATCY 1 cut(s) 761
RsaI GTAC 2 cut(s) 32, 815
RsaNI GTAC 2 cut(s) 31, 814
RseI CAYNNNNRTG 1 cut(s) 629
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 4 cut(s) 40, 419, 489, 500
Sau3AI GATC 6 cut(s) 7, 166, 244, 264, 732, 761
ScaI AGTACT 1 cut(s) 815
SchI GAGTC 2 cut(s) 75, 208
ScrFI CCNGG 2 cut(s) 551, 741
SduI GDGCHC 2 cut(s) 318, 549
SfaNI GCATC 2 cut(s) 298, 475
SfcI CTRYAG 1 cut(s) 753
SmiMI CAYNNNNRTG 1 cut(s) 629
Sse9I AATT 6 cut(s) 159, 192, 285, 586, 606, 790
SsiI CCGC 2 cut(s) 39, 292
SspI AATATT 1 cut(s) 655
SspMI CTAG 2 cut(s) 57, 765
StyD4I CCNGG 2 cut(s) 549, 739
StyI CCWWGG 1 cut(s) 48
TasI AATT 6 cut(s) 159, 192, 285, 586, 606, 790
TatI WGTACW 1 cut(s) 813
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 2 cut(s) 371, 711
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TscAI CASTG 1 cut(s) 631
TseFI GTSAC 4 cut(s) 593, 601, 622, 717
TseI GCWGC 3 cut(s) 418, 488, 499
Tsp45I GTSAC 4 cut(s) 593, 601, 622, 717
TspDTI ATGAA 3 cut(s) 353, 446, 548
TspGWI ACGGA 1 cut(s) 774
TspRI CASTG 1 cut(s) 631
Van91I CCANNNNNTGG 3 cut(s) 49, 431, 458
XapI RAATTY 3 cut(s) 159, 285, 586
XmnI GAANNNNTTC 2 cut(s) 360, 634
XspI CTAG 2 cut(s) 57, 765
ZrmI AGTACT 1 cut(s) 815
Zsp2I ATGCAT 1 cut(s) 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.