Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002555

Physical Location & Seq

Genomic Coordinates Reverse (-)

2983816 .. 2987812

Gene Structure 3997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G001850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCCAACTATTGGCGATATTTTAGGCTGGATGGTGATCCACACGTATACGGAGCTGGAAGAAGATATTTGCAAGATTATCAGTTGGATCGATCCGATGATGAAGTGGATCATATATTCTACTTGGGTCATACCATTGATGACGTGTGGTTGAAAGATGATGCACCAGAAAATGTGGAAGATGAGGCCCAGGAGTCCCAGGAGGCCCAAGAGCTTGGTGAAGATGGGGAACGGGAGGTGCAAGAGGGTTCTGAAAATGTGGAAGAGGTTCATATGGATTCTGAAGATGAGTATATGCCAGAAGAGGAGAATGGTGAAAATGAGTTGCCTCCAGAAGATGGTGCAAATGTCCTGCCTCTAGTTCATGGTGAAAATGTGTTCCCTCCAGAAGATGCTGCAAGTGTGCAGCAGCAGCCTGAAATTGGGGAAGTTCAAGTTCCAGAAAATGTAGAGGTGCCCCAGCATGTTGTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

18.12

Weight (kDa)

4.05

Isoelectric Point (pI)

66.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097701 RchiOBHm_Chr6g0292791
rosa_laevigata	RLG00000015275 RLG00000021547 RLG00000030592
rosa_roxburghii	Rroxscaffold_1G00036680 Rroxscaffold_1G00041910 Rroxscaffold_4G00298950
rosa_samantha	Rh1BG038600 Rh1BG413300 Rh1CG442700 Rh1DG446300 Rh2AG239900 Rh2AG454600 Rh2BG458800 Rh2CG329000 Rh2CG441700 Rh2DG247800 Rh3AG319400 Rh3DG074200 Rh3DG253400 Rh4AG134000 Rh4CG324700 Rh4DG018300 Rh5BG409600 Rh5CG361100 Rh5CG434400 Rh5DG243200 Rh6AG347300 Rh6CG028700 Rh6CG148300 Rh6CG361100 Rh6DG027800 Rh7AG187400 Rh7BG242700
rosa_wichuraiana	Rw0G008450 Rw2G012270 Rw4G030630 Rw5G021380 Rw5G046710 Rw6G001850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	454
AccB7I	CCANNNNNTGG	2 cut(s)	12, 338
AccI	GTMKAC	1 cut(s)	48
AclWI	GGATC	4 cut(s)	32, 87, 96, 117
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	303
AfiI	CCNNNNNNNGG	3 cut(s)	12, 338, 422
AflIII	ACRYGT	2 cut(s)	43, 144
AgsI	TTSAA	3 cut(s)	154, 434, 473
AjiI	CACGTC	1 cut(s)	145
AjnI	CCWGG	2 cut(s)	189, 198
AluBI	AGCT	2 cut(s)	56, 214
AluI	AGCT	2 cut(s)	56, 214
AlwI	GGATC	4 cut(s)	32, 87, 96, 117
AoxI	GGCC	3 cut(s)	3, 186, 204
ApeKI	GCWGC	4 cut(s)	395, 406, 409, 412
Asp700I	GAANNNNTTC	1 cut(s)	267
AspS9I	GGNCC	2 cut(s)	187, 205
AsuHPI	GGTGA	4 cut(s)	47, 230, 326, 380
BaeGI	GKGCMC	1 cut(s)	459
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	454
BbvI	GCAGC	4 cut(s)	382, 418, 421, 424
BccI	CCATC	3 cut(s)	26, 218, 332
BciT130I	CCWGG	2 cut(s)	191, 200
BfaI	CTAG	1 cut(s)	359
BisI	GCNGC	4 cut(s)	396, 407, 410, 413
BlsI	GCNGC	4 cut(s)	397, 408, 411, 414
Bme1390I	CCNGG	2 cut(s)	191, 200
BmgBI	CACGTC	1 cut(s)	145
BmgT120I	GGNCC	2 cut(s)	187, 205
BmiI	GGNNCC	1 cut(s)	456
BmrFI	CCNGG	2 cut(s)	191, 200
BmsI	GCATC	2 cut(s)	151, 382
BpmI	CTGGAG	2 cut(s)	315, 369
Bsa29I	ATCGAT	1 cut(s)	91
BsaAI	YACGTR	1 cut(s)	46
BsaBI	GATNNNNATC	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	189, 198
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 338, 422
Bse8I	GATNNNNATC	1 cut(s)	36
BseBI	CCWGG	2 cut(s)	191, 200
BseCI	ATCGAT	1 cut(s)	91
BseDI	CCNNGG	2 cut(s)	189, 198
BseGI	GGATG	1 cut(s)	37
BseJI	GATNNNNATC	1 cut(s)	36
BseLI	CCNNNNNNNGG	3 cut(s)	12, 338, 422
BseRI	GAGGAG	1 cut(s)	320
BseSI	GKGCMC	1 cut(s)	459
BseXI	GCAGC	4 cut(s)	382, 418, 421, 424
BseYI	CCCAGC	1 cut(s)	459
BsgI	GTGCAG	1 cut(s)	425
BshFI	GGCC	3 cut(s)	5, 188, 206
BshNI	GGYRCC	1 cut(s)	454
BshVI	ATCGAT	1 cut(s)	91
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	3 cut(s)	12, 338, 422
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	3 cut(s)	5, 188, 206
Bsp1286I	GDGCHC	1 cut(s)	459
Bsp143I	GATC	4 cut(s)	37, 88, 92, 109
BspANI	GGCC	3 cut(s)	5, 188, 206
BspDI	ATCGAT	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	456
BspPI	GGATC	4 cut(s)	32, 87, 96, 117
BspT107I	GGYRCC	1 cut(s)	454
BssECI	CCNNGG	2 cut(s)	189, 198
BssMI	GATC	4 cut(s)	37, 88, 92, 109
BssNAI	GTATAC	1 cut(s)	49
Bst1107I	GTATAC	1 cut(s)	49
Bst2UI	CCWGG	2 cut(s)	191, 200
Bst6I	CTCTTC	2 cut(s)	258, 297
BstBAI	YACGTR	1 cut(s)	46
BstF5I	GGATG	1 cut(s)	37
BstKTI	GATC	4 cut(s)	40, 91, 95, 112
BstMBI	GATC	4 cut(s)	37, 88, 92, 109
BstMWI	GCNNNNNNNGC	1 cut(s)	412
BstNI	CCWGG	2 cut(s)	191, 200
BstNSI	RCATGY	1 cut(s)	467
BstSCI	CCNGG	2 cut(s)	189, 198
BstSLI	GKGCMC	1 cut(s)	459
BstV1I	GCAGC	4 cut(s)	382, 418, 421, 424
BstXI	CCANNNNNNTGG	1 cut(s)	215
BstZ17I	GTATAC	1 cut(s)	49
Bsu15I	ATCGAT	1 cut(s)	91
BsuRI	GGCC	3 cut(s)	5, 188, 206
BsuTUI	ATCGAT	1 cut(s)	91
BtrI	CACGTC	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	37
Cfr13I	GGNCC	2 cut(s)	187, 205
ClaI	ATCGAT	1 cut(s)	91
CviAII	CATG	2 cut(s)	365, 464
CviJI	RGCY	7 cut(s)	5, 28, 56, 188, 206, 214, 415
CviKI_1	RGCY	7 cut(s)	5, 28, 56, 188, 206, 214, 415
DpnI	GATC	4 cut(s)	39, 90, 94, 111
DpnII	GATC	4 cut(s)	37, 88, 92, 109
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	258, 297
EarI	CTCTTC	2 cut(s)	258, 297
Eco57I	CTGAAG	1 cut(s)	303
EcoRII	CCWGG	2 cut(s)	189, 198
FaeI	CATG	2 cut(s)	368, 467
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	2 cut(s)	364, 463
FauNDI	CATATG	1 cut(s)	273
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	4 cut(s)	396, 407, 410, 413
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	4 cut(s)	396, 407, 410, 413
FspBI	CTAG	1 cut(s)	359
GluI	GCNGC	4 cut(s)	396, 407, 410, 413
GsaI	CCCAGC	1 cut(s)	463
GsuI	CTGGAG	2 cut(s)	315, 369
HaeIII	GGCC	3 cut(s)	5, 188, 206
Hin1II	CATG	2 cut(s)	368, 467
HinfI	GANTC	2 cut(s)	194, 278
HphI	GGTGA	4 cut(s)	47, 230, 326, 380
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	3 cut(s)	97, 253, 283
Hpy188III	TCNNGA	3 cut(s)	332, 386, 440
Hpy8I	GTNNAC	1 cut(s)	49
HpyCH4IV	ACGT	2 cut(s)	45, 144
HpyCH4V	TGCA	6 cut(s)	73, 164, 241, 344, 398, 406
HpyF10VI	GCNNNNNNNGC	1 cut(s)	412
HpySE526I	ACGT	2 cut(s)	45, 144
Hsp92II	CATG	2 cut(s)	368, 467
Kzo9I	GATC	4 cut(s)	37, 88, 92, 109
LmnI	GCTCC	1 cut(s)	53
Lsp1109I	GCAGC	4 cut(s)	382, 418, 421, 424
LweI	GCATC	2 cut(s)	151, 382
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	2 cut(s)	45, 144
MalI	GATC	4 cut(s)	39, 90, 94, 111
MboI	GATC	4 cut(s)	37, 88, 92, 109
MboII	GAAGA	9 cut(s)	72, 75, 191, 233, 275, 296, 314, 347, 401
MhlI	GDGCHC	1 cut(s)	459
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	420
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	1 cut(s)	66
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	267
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	2 cut(s)	191, 200
MvaI	CCWGG	2 cut(s)	191, 200
MwoI	GCNNNNNNNGC	1 cut(s)	412
NdeI	CATATG	1 cut(s)	273
NdeII	GATC	4 cut(s)	37, 88, 92, 109
NlaIII	CATG	2 cut(s)	368, 467
NlaIV	GGNNCC	1 cut(s)	456
NspI	RCATGY	1 cut(s)	467
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	278
PflMI	CCANNNNNTGG	2 cut(s)	12, 338
PkrI	GCNGC	4 cut(s)	397, 408, 411, 414
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
Ppu21I	YACGTR	1 cut(s)	46
Psp6I	CCWGG	2 cut(s)	189, 198
PspFI	CCCAGC	1 cut(s)	459
PspGI	CCWGG	2 cut(s)	189, 198
PspN4I	GGNNCC	1 cut(s)	456
PspPI	GGNCC	2 cut(s)	187, 205
SatI	GCNGC	4 cut(s)	396, 407, 410, 413
Sau3AI	GATC	4 cut(s)	37, 88, 92, 109
Sau96I	GGNCC	2 cut(s)	187, 205
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	2 cut(s)	191, 200
SduI	GDGCHC	1 cut(s)	459
SetI	ASST	7 cut(s)	48, 58, 147, 216, 240, 270, 456
SfaNI	GCATC	2 cut(s)	151, 382
Sse9I	AATT	1 cut(s)	420
SspMI	CTAG	1 cut(s)	359
StyD4I	CCNGG	2 cut(s)	189, 198
TaiI	ACGT	2 cut(s)	48, 147
TaqI	TCGA	1 cut(s)	91
TasI	AATT	1 cut(s)	420
TfiI	GAWTC	1 cut(s)	278
TseI	GCWGC	4 cut(s)	395, 406, 409, 412
TspDTI	ATGAA	3 cut(s)	117, 260, 353
TspGWI	ACGGA	1 cut(s)	66
Van91I	CCANNNNNTGG	2 cut(s)	12, 338
XceI	RCATGY	1 cut(s)	467
XmiI	GTMKAC	1 cut(s)	48
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.