Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002555

Physical Location & Seq

Genomic Coordinates Forward (+)

65476389 .. 65495675

Gene Structure 19287 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG446300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGGGATCCACCTGTGTTTTCAGGAGGGGAATGTGGAGAATGAGCAAATGCAGGGGAATGGGGGAGCTATGAATCAGCAGCAGCAACCCCAAGCTCAAGGGAATGGGGGGACTGTGAATCAGCACCAGCACCAGCCCCAAGCTCAAAATGTTGAAGCTCCTCAGAATCATCAGCAACAACACCAGGTTTCAATGGAGGATGTTGAGGTTCCAGCTCCTGCAGAGCCACCACAGGTTAATTCTGAGACTATTACTGGACCTGTGAATGTTGATCACTTCAATGTAATTCCATCACAAAATTCCACCAATAATGGTCAGCAGACACAGGTAAATCAGCAAACTGGAGCCTCCTCCAGGCCTCTGTTTTCAGGAAAAAAGCGGTGGACAAATACTGCTATAAGCAGGCATGCCATTGGCGAAAAATTGGATGAGGTACAATCTAAGGTCCGTCGTTACAATGATTTATGTCGACGAGCCATAATATTGGGTGAAGAAGGGTCACTTTCTCAGGAGAGCTATGATGTAGCATTATGTGCCATAAAAGAAGCTTTAAAGCAATGCACGAGTTTGAACACCTCTGTTGAAAGCAATGCAAAACCTAATGACTCGGCAATAGATGGTATTTGTGGTATTGAAGTGAGTCAGTGTGGTATGACATCTGATGACAAGATTTTTGGTCTGAAAGTGAGTACTGCTAGCAAGACTCCTAGGAGAGTTGGGACTAGGAAAGTGGTGGCAAGGCATGGGAAAGGAAAGGTACCTCAGCCGGAAGGTATGAGAGTTGGAACACAAGACCAGTTTCCCCAAATGCAAGTTTGTTCTGAGACAAGGCCGCCTATGCTGATGCAGCTACATAATGTGGTGCCTCCGCAGTTGCATAATATGGTGCCATCAATGTTTCAAAATGTTGCACCGGCACAGTTCCATAACGTGGCTTGTTCGACACCTGTGCAGGAGAATCGTTTCCCTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

324

Amino Acids

35.5

Weight (kDa)

6.59

Isoelectric Point (pI)

47.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097701 RchiOBHm_Chr6g0292791
rosa_laevigata	RLG00000015275 RLG00000021547 RLG00000030592
rosa_roxburghii	Rroxscaffold_1G00036680 Rroxscaffold_1G00041910 Rroxscaffold_4G00298950
rosa_samantha	Rh1BG038600 Rh1BG413300 Rh1CG442700 Rh1DG446300 Rh2AG239900 Rh2AG454600 Rh2BG458800 Rh2CG329000 Rh2CG441700 Rh2DG247800 Rh3AG319400 Rh3DG074200 Rh3DG253400 Rh4AG134000 Rh4CG324700 Rh4DG018300 Rh5BG409600 Rh5CG361100 Rh5CG434400 Rh5DG243200 Rh6AG347300 Rh6CG028700 Rh6CG148300 Rh6CG361100 Rh6DG027800 Rh7AG187400 Rh7BG242700
rosa_wichuraiana	Rw0G008450 Rw2G012270 Rw4G030630 Rw5G021380 Rw5G046710 Rw6G001850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	757
AccB1I	GGYRCC	3 cut(s)	757, 862, 886
AccB7I	CCANNNNNTGG	1 cut(s)	931
AccI	GTMKAC	1 cut(s)	469
AciI	CCGC	3 cut(s)	379, 833, 869
AclWI	GGATC	1 cut(s)	14
AcsI	RAATTY	1 cut(s)	298
AfaI	GTAC	3 cut(s)	435, 691, 759
AfiI	CCNNNNNNNGG	2 cut(s)	354, 931
AgsI	TTSAA	7 cut(s)	155, 192, 280, 571, 584, 635, 902
AjnI	CCWGG	2 cut(s)	183, 353
AluBI	AGCT	8 cut(s)	68, 95, 143, 158, 215, 516, 548, 850
AluI	AGCT	8 cut(s)	68, 95, 143, 158, 215, 516, 548, 850
Alw26I	GTCTC	2 cut(s)	239, 818
AlwI	GGATC	1 cut(s)	14
AlwNI	CAGNNNCTG	1 cut(s)	218
AoxI	GGCC	2 cut(s)	356, 830
ApeKI	GCWGC	3 cut(s)	79, 82, 847
ApoI	RAATTY	1 cut(s)	298
ArsI	GACNNNNNNTTYG	2 cut(s)	656, 688
Asp700I	GAANNNNTTC	1 cut(s)	962
Asp718I	GGTACC	1 cut(s)	757
AspA2I	CCTAGG	1 cut(s)	707
AspS9I	GGNCC	2 cut(s)	257, 445
AsuHPI	GGTGA	1 cut(s)	500
AsuNHI	GCTAGC	1 cut(s)	695
AvaII	GGWCC	2 cut(s)	257, 445
AvrII	CCTAGG	1 cut(s)	707
BamHI	GGATCC	1 cut(s)	6
BanI	GGYRCC	3 cut(s)	757, 862, 886
BauI	CACGAG	1 cut(s)	562
BbvCI	CCTCAGC	1 cut(s)	762
BbvI	GCAGC	3 cut(s)	91, 94, 859
BccI	CCATC	3 cut(s)	298, 611, 898
BcgI	CGANNNNNNTGC	4 cut(s)	931, 941, 965, 975
BciT130I	CCWGG	2 cut(s)	185, 355
BclI	TGATCA	1 cut(s)	271
BcoDI	GTCTC	2 cut(s)	239, 818
BfaI	CTAG	3 cut(s)	696, 708, 723
BfmI	CTRYAG	1 cut(s)	219
BisI	GCNGC	4 cut(s)	80, 83, 833, 848
BlnI	CCTAGG	1 cut(s)	707
BlsI	GCNGC	4 cut(s)	81, 84, 834, 849
BmcAI	AGTACT	1 cut(s)	691
Bme1390I	CCNGG	2 cut(s)	185, 355
Bme18I	GGWCC	2 cut(s)	257, 445
BmgT120I	GGNCC	2 cut(s)	257, 445
BmiI	GGNNCC	6 cut(s)	8, 210, 346, 759, 864, 888
BmrFI	CCNGG	2 cut(s)	185, 355
BmsI	GCATC	1 cut(s)	834
BmtI	GCTAGC	1 cut(s)	699
BpmI	CTGGAG	2 cut(s)	337, 363
Bpu10I	CCTNAGC	1 cut(s)	762
BpuEI	CTTGAG	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	707
Bsc4I	CCNNNNNNNGG	2 cut(s)	354, 931
Bse118I	RCCGGY	1 cut(s)	913
Bse1I	ACTGG	3 cut(s)	259, 346, 796
Bse3DI	GCAATG	2 cut(s)	563, 595
BseBI	CCWGG	2 cut(s)	185, 355
BseDI	CCNNGG	1 cut(s)	707
BseGI	GGATG	2 cut(s)	205, 433
BseLI	CCNNNNNNNGG	2 cut(s)	354, 931
BseMI	GCAATG	2 cut(s)	563, 595
BseMII	CTCAG	5 cut(s)	176, 234, 521, 776, 813
BseNI	ACTGG	3 cut(s)	259, 346, 796
BseRI	GAGGAG	2 cut(s)	150, 340
BseXI	GCAGC	3 cut(s)	91, 94, 859
BsgI	GTGCAG	1 cut(s)	971
BshFI	GGCC	2 cut(s)	358, 832
BshNI	GGYRCC	3 cut(s)	757, 862, 886
BsiSI	CCGG	2 cut(s)	767, 914
BslFI	GGGAC	2 cut(s)	124, 733
BslI	CCNNNNNNNGG	2 cut(s)	354, 931
BsmAI	GTCTC	2 cut(s)	239, 818
BsmFI	GGGAC	2 cut(s)	124, 733
BsnI	GGCC	2 cut(s)	358, 832
Bsp143I	GATC	2 cut(s)	6, 271
BspACI	CCGC	3 cut(s)	379, 833, 869
BspANI	GGCC	2 cut(s)	358, 832
BspCNI	CTCAG	5 cut(s)	175, 235, 520, 775, 814
BspLI	GGNNCC	6 cut(s)	8, 210, 346, 759, 864, 888
BspMAI	CTGCAG	1 cut(s)	223
BspOI	GCTAGC	1 cut(s)	699
BspPI	GGATC	1 cut(s)	14
BspT107I	GGYRCC	3 cut(s)	757, 862, 886
BsrDI	GCAATG	2 cut(s)	563, 595
BsrFI	RCCGGY	1 cut(s)	913
BsrI	ACTGG	3 cut(s)	259, 346, 796
BssAI	RCCGGY	1 cut(s)	913
BssECI	CCNNGG	1 cut(s)	707
BssMI	GATC	2 cut(s)	6, 271
BssSI	CACGAG	1 cut(s)	562
BssT1I	CCWWGG	1 cut(s)	707
Bst2BI	CACGAG	1 cut(s)	562
Bst2UI	CCWGG	2 cut(s)	185, 355
Bst4CI	ACNGT	2 cut(s)	115, 921
BstAPI	GCANNNNNTGC	1 cut(s)	533
BstC8I	GCNNGC	3 cut(s)	404, 408, 697
BstDEI	CTNAG	7 cut(s)	162, 243, 441, 507, 762, 822, 969
BstENI	CCTNNNNNAGG	1 cut(s)	352
BstF5I	GGATG	2 cut(s)	205, 433
BstKTI	GATC	2 cut(s)	9, 274
BstMAI	GTCTC	2 cut(s)	239, 818
BstMBI	GATC	2 cut(s)	6, 271
BstMWI	GCNNNNNNNGC	3 cut(s)	533, 838, 847
BstNI	CCWGG	2 cut(s)	185, 355
BstNSI	RCATGY	1 cut(s)	410
BstSCI	CCNGG	2 cut(s)	183, 353
BstSFI	CTRYAG	1 cut(s)	219
BstV1I	GCAGC	3 cut(s)	91, 94, 859
BstX2I	RGATCY	1 cut(s)	6
BstXI	CCANNNNNNTGG	1 cut(s)	484
BstYI	RGATCY	1 cut(s)	6
BsuRI	GGCC	2 cut(s)	358, 832
BtsCI	GGATG	2 cut(s)	205, 433
BtsIMutI	CAGTG	1 cut(s)	650
Cac8I	GCNNGC	3 cut(s)	404, 408, 697
CaiI	CAGNNNCTG	1 cut(s)	218
Cfr10I	RCCGGY	1 cut(s)	913
Cfr13I	GGNCC	2 cut(s)	257, 445
CsiI	ACCWGGT	1 cut(s)	183
Csp6I	GTAC	3 cut(s)	434, 690, 758
CviAII	CATG	2 cut(s)	407, 743
CviQI	GTAC	3 cut(s)	434, 690, 758
DdeI	CTNAG	7 cut(s)	162, 243, 441, 507, 762, 822, 969
DpnI	GATC	2 cut(s)	8, 273
DpnII	GATC	2 cut(s)	6, 271
DraI	TTTAAA	1 cut(s)	552
Eco130I	CCWWGG	1 cut(s)	707
Eco147I	AGGCCT	1 cut(s)	358
Eco47I	GGWCC	2 cut(s)	257, 445
EcoNI	CCTNNNNNAGG	1 cut(s)	352
EcoRII	CCWGG	2 cut(s)	183, 353
EcoT14I	CCWWGG	1 cut(s)	707
ErhI	CCWWGG	1 cut(s)	707
FaeI	CATG	2 cut(s)	410, 746
FalI	AAGNNNNNCTT	2 cut(s)	486, 518
FaqI	GGGAC	2 cut(s)	124, 733
FatI	CATG	2 cut(s)	406, 742
FbaI	TGATCA	1 cut(s)	271
FblI	GTMKAC	1 cut(s)	469
Fnu4HI	GCNGC	4 cut(s)	80, 83, 833, 848
FokI	GGATG	2 cut(s)	212, 440
Fsp4HI	GCNGC	4 cut(s)	80, 83, 833, 848
FspBI	CTAG	3 cut(s)	696, 708, 723
GluI	GCNGC	4 cut(s)	80, 83, 833, 848
GsuI	CTGGAG	2 cut(s)	337, 363
HaeIII	GGCC	2 cut(s)	358, 832
HapII	CCGG	2 cut(s)	767, 914
Hin1II	CATG	2 cut(s)	410, 746
HincII	GTYRAC	1 cut(s)	470
HindII	GTYRAC	1 cut(s)	470
HindIII	AAGCTT	1 cut(s)	546
HinfI	GANTC	7 cut(s)	73, 118, 166, 605, 640, 703, 958
HpaII	CCGG	2 cut(s)	767, 914
HphI	GGTGA	1 cut(s)	500
Hpy166II	GTNNAC	2 cut(s)	384, 470
Hpy188I	TCNGA	5 cut(s)	165, 244, 661, 681, 823
Hpy188III	TCNNGA	3 cut(s)	23, 369, 509
Hpy8I	GTNNAC	2 cut(s)	384, 470
Hpy99I	CGWCG	2 cut(s)	453, 474
HpyAV	CCTTC	2 cut(s)	488, 764
HpyCH4III	ACNGT	2 cut(s)	115, 921
HpyCH4IV	ACGT	1 cut(s)	930
HpyCH4V	TGCA	9 cut(s)	52, 221, 561, 593, 811, 847, 877, 911, 952
HpyF10VI	GCNNNNNNNGC	3 cut(s)	533, 838, 847
HpyF3I	CTNAG	7 cut(s)	162, 243, 441, 507, 762, 822, 969
HpySE526I	ACGT	1 cut(s)	930
Hsp92II	CATG	2 cut(s)	410, 746
KpnI	GGTACC	1 cut(s)	761
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	2 cut(s)	6, 271
LmnI	GCTCC	4 cut(s)	65, 163, 220, 344
Lsp1109I	GCAGC	3 cut(s)	91, 94, 859
LweI	GCATC	1 cut(s)	834
MabI	ACCWGGT	1 cut(s)	183
MaeI	CTAG	3 cut(s)	696, 708, 723
MaeII	ACGT	1 cut(s)	930
MaeIII	GTNAC	2 cut(s)	452, 498
MalI	GATC	2 cut(s)	8, 273
MboI	GATC	2 cut(s)	6, 271
MboII	GAAGA	1 cut(s)	503
MflI	RGATCY	1 cut(s)	6
MluCI	AATT	4 cut(s)	238, 285, 298, 422
MlyI	GAGTC	3 cut(s)	599, 649, 697
MmeI	TCCRAC	1 cut(s)	763
MroXI	GAANNNNTTC	1 cut(s)	962
MseI	TTAA	2 cut(s)	237, 551
MslI	CAYNNNNRTG	1 cut(s)	279
MspI	CCGG	2 cut(s)	767, 914
MspR9I	CCNGG	2 cut(s)	185, 355
MvaI	CCWGG	2 cut(s)	185, 355
MwoI	GCNNNNNNNGC	3 cut(s)	533, 838, 847
NdeII	GATC	2 cut(s)	6, 271
NheI	GCTAGC	1 cut(s)	695
NlaIII	CATG	2 cut(s)	410, 746
NlaIV	GGNNCC	6 cut(s)	8, 210, 346, 759, 864, 888
NmeAIII	GCCGAG	1 cut(s)	587
NmuCI	GTSAC	1 cut(s)	498
NspI	RCATGY	1 cut(s)	410
PaeI	GCATGC	1 cut(s)	410
PceI	AGGCCT	1 cut(s)	358
PdmI	GAANNNNTTC	1 cut(s)	962
PfeI	GAWTC	4 cut(s)	73, 118, 166, 958
PflMI	CCANNNNNTGG	1 cut(s)	931
PkrI	GCNGC	4 cut(s)	81, 84, 834, 849
PleI	GAGTC	3 cut(s)	599, 648, 697
PpsI	GAGTC	3 cut(s)	599, 648, 697
Psp6I	CCWGG	2 cut(s)	183, 353
PspGI	CCWGG	2 cut(s)	183, 353
PspN4I	GGNNCC	6 cut(s)	8, 210, 346, 759, 864, 888
PspPI	GGNCC	2 cut(s)	257, 445
PstI	CTGCAG	1 cut(s)	223
PstNI	CAGNNNCTG	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	6
RsaI	GTAC	3 cut(s)	435, 691, 759
RsaNI	GTAC	3 cut(s)	434, 690, 758
RseI	CAYNNNNRTG	1 cut(s)	279
SalI	GTCGAC	1 cut(s)	468
SaqAI	TTAA	2 cut(s)	237, 551
SatI	GCNGC	4 cut(s)	80, 83, 833, 848
Sau3AI	GATC	2 cut(s)	6, 271
Sau96I	GGNCC	2 cut(s)	257, 445
ScaI	AGTACT	1 cut(s)	691
SchI	GAGTC	3 cut(s)	599, 649, 697
ScrFI	CCNGG	2 cut(s)	185, 355
SexAI	ACCWGGT	1 cut(s)	183
SfaNI	GCATC	1 cut(s)	834
SfcI	CTRYAG	1 cut(s)	219
SinI	GGWCC	2 cut(s)	257, 445
SmiMI	CAYNNNNRTG	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
SphI	GCATGC	1 cut(s)	410
Sse9I	AATT	4 cut(s)	238, 285, 298, 422
SseBI	AGGCCT	1 cut(s)	358
SsiI	CCGC	3 cut(s)	379, 833, 869
SspI	AATATT	1 cut(s)	483
SspMI	CTAG	3 cut(s)	696, 708, 723
StuI	AGGCCT	1 cut(s)	358
StyD4I	CCNGG	2 cut(s)	183, 353
StyI	CCWWGG	1 cut(s)	707
TaaI	ACNGT	2 cut(s)	115, 921
TaiI	ACGT	1 cut(s)	933
TaqI	TCGA	2 cut(s)	469, 941
TasI	AATT	4 cut(s)	238, 285, 298, 422
TatI	WGTACW	1 cut(s)	689
TauI	GCSGC	1 cut(s)	835
TfiI	GAWTC	4 cut(s)	73, 118, 166, 958
Tru1I	TTAA	2 cut(s)	237, 551
Tru9I	TTAA	2 cut(s)	237, 551
TscAI	CASTG	1 cut(s)	650
TseFI	GTSAC	1 cut(s)	498
TseI	GCWGC	3 cut(s)	79, 82, 847
Tsp45I	GTSAC	1 cut(s)	498
TspDTI	ATGAA	1 cut(s)	86
TspGWI	ACGGA	1 cut(s)	437
TspRI	CASTG	1 cut(s)	650
Van91I	CCANNNNNTGG	1 cut(s)	931
VpaK11BI	GGWCC	2 cut(s)	257, 445
XagI	CCTNNNNNAGG	1 cut(s)	352
XapI	RAATTY	1 cut(s)	298
XceI	RCATGY	1 cut(s)	410
XmaJI	CCTAGG	1 cut(s)	707
XmiI	GTMKAC	1 cut(s)	469
XmnI	GAANNNNTTC	1 cut(s)	962
XspI	CTAG	3 cut(s)	696, 708, 723
ZrmI	AGTACT	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.