Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002555

Physical Location & Seq

Genomic Coordinates Forward (+)

66418272 .. 66427112

Gene Structure 8841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG409600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGAGTAACCTGAACAAATTAGACTTTGCTCCATTGGGAACAACTGGCTCTGGATATCACAGGTGGGTTTGTGATGTCCGCCAGCATCTTAAGGCCGATGAAATCCTAGATACGATTCTCGAGCTTAACCAGGACGTGCTAACTGTTGAGCAAGCTCAAGCTTTGGAAGCAAATAGAGCAGCCTTAGAGGCAAATAAGGCTAAAGCTATCATCCTAATGACTGCTCCAGGTGTTGAAGAGGTGCCAAAGGATGTGGATGATGAAAAGGAGCCAGTGGATGTAGATCCACTAGATGTAGATGATGATGAAGAGGTTCCTCTAGATGGAATTATGCCTGAAAACTGGGAATATACTGATGATGGGCCTGAAGTGCAAAGCAATGGTCCAGAAATGAGTGAAGCTGCTAATGGGCCTGAAGTGCAGAGTGGTTGTCCACAGTCAACTGAAGGTAATGGGCCTAGAGGGAATGTGGAGAATGATCAAATGCAGGGGAATGGGGGAGCTGTGAATCAGCAGCAGCAACCCCAAGCTCAAGGGAATGAAGGGGATGTGAATCAGCACCAGCAGCAGCCCCAAGCTCAAAATGTTGAAGCTCCTCAGAATCATCAGCAACAACACCAGGTTTCAATGGAGGATGTTGAGGTTCCAGCTCCTGCAGAGCCACCACAGGTTAATTATGAGACTATTACTGGACCTGTGAATGTTGATCACTTCAATGTAATGCCATCACAAAATTCCAACAATAATGGTCAGCAGACACAGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

255

Amino Acids

27.77

Weight (kDa)

4.05

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097701 RchiOBHm_Chr6g0292791
rosa_laevigata	RLG00000015275 RLG00000021547 RLG00000030592
rosa_roxburghii	Rroxscaffold_1G00036680 Rroxscaffold_1G00041910 Rroxscaffold_4G00298950
rosa_samantha	Rh1BG038600 Rh1BG413300 Rh1CG442700 Rh1DG446300 Rh2AG239900 Rh2AG454600 Rh2BG458800 Rh2CG329000 Rh2CG441700 Rh2DG247800 Rh3AG319400 Rh3DG074200 Rh3DG253400 Rh4AG134000 Rh4CG324700 Rh4DG018300 Rh5BG409600 Rh5CG361100 Rh5CG434400 Rh5DG243200 Rh6AG347300 Rh6CG028700 Rh6CG148300 Rh6CG361100 Rh6DG027800 Rh7AG187400 Rh7BG242700
rosa_wichuraiana	Rw0G008450 Rw2G012270 Rw4G030630 Rw5G021380 Rw5G046710 Rw6G001850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	241
AciI	CCGC	1 cut(s)	79
AclWI	GGATC	1 cut(s)	278
AcsI	RAATTY	1 cut(s)	733
AcuI	CTGAAG	3 cut(s)	387, 435, 465
AfiI	CCNNNNNNNGG	1 cut(s)	323
AflII	CTTAAG	1 cut(s)	89
AgsI	TTSAA	4 cut(s)	236, 590, 627, 715
AjiI	CACGTC	1 cut(s)	136
AjnI	CCWGG	3 cut(s)	129, 226, 618
Alw26I	GTCTC	1 cut(s)	674
AlwI	GGATC	1 cut(s)	278
AlwNI	CAGNNNCTG	1 cut(s)	653
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	4 cut(s)	93, 362, 410, 455
ApeKI	GCWGC	6 cut(s)	179, 401, 514, 517, 565, 568
ApoI	RAATTY	1 cut(s)	733
ArsI	GACNNNNNNTTYG	2 cut(s)	367, 399
Asp700I	GAANNNNTTC	1 cut(s)	312
AspS9I	GGNCC	5 cut(s)	362, 383, 410, 455, 692
AvaI	CYCGRG	1 cut(s)	119
AvaII	GGWCC	2 cut(s)	383, 692
BanI	GGYRCC	1 cut(s)	241
BbvI	GCAGC	6 cut(s)	191, 388, 526, 529, 577, 580
BccI	CCATC	3 cut(s)	317, 353, 733
BciT130I	CCWGG	3 cut(s)	131, 228, 620
BclI	TGATCA	2 cut(s)	478, 706
BcoDI	GTCTC	1 cut(s)	674
BfaI	CTAG	4 cut(s)	107, 290, 320, 459
BfmI	CTRYAG	1 cut(s)	654
BfrI	CTTAAG	1 cut(s)	89
BglI	GCCNNNNNGGC	1 cut(s)	188
BisI	GCNGC	6 cut(s)	180, 402, 515, 518, 566, 569
BlsI	GCNGC	6 cut(s)	181, 403, 516, 519, 567, 570
Bme1390I	CCNGG	3 cut(s)	131, 228, 620
Bme18I	GGWCC	2 cut(s)	383, 692
BmeT110I	CYCGRG	1 cut(s)	119
BmgBI	CACGTC	1 cut(s)	136
BmgT120I	GGNCC	5 cut(s)	362, 383, 410, 455, 692
BmiI	GGNNCC	4 cut(s)	243, 270, 315, 645
BmrFI	CCNGG	3 cut(s)	131, 228, 620
BmrI	ACTGGG	1 cut(s)	352
BmsI	GCATC	1 cut(s)	94
BmuI	ACTGGG	1 cut(s)	352
BpmI	CTGGAG	1 cut(s)	210
BpuEI	CTTGAG	2 cut(s)	141, 516
BsaBI	GATNNNNATC	2 cut(s)	282, 552
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
Bse1I	ACTGG	4 cut(s)	49, 272, 347, 694
Bse3DI	GCAATG	1 cut(s)	385
Bse8I	GATNNNNATC	2 cut(s)	282, 552
BseBI	CCWGG	3 cut(s)	131, 228, 620
BseGI	GGATG	6 cut(s)	210, 256, 262, 283, 553, 640
BseJI	GATNNNNATC	2 cut(s)	282, 552
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseMI	GCAATG	1 cut(s)	385
BseMII	CTCAG	1 cut(s)	611
BseNI	ACTGG	4 cut(s)	49, 272, 347, 694
BseRI	GAGGAG	1 cut(s)	585
BseXI	GCAGC	6 cut(s)	191, 388, 526, 529, 577, 580
BsgI	GTGCAG	1 cut(s)	440
BshFI	GGCC	4 cut(s)	95, 364, 412, 457
BshNI	GGYRCC	1 cut(s)	241
BsiHKCI	CYCGRG	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	323
BsmAI	GTCTC	1 cut(s)	674
BsnI	GGCC	4 cut(s)	95, 364, 412, 457
BsoBI	CYCGRG	1 cut(s)	119
Bsp143I	GATC	3 cut(s)	283, 478, 706
BspACI	CCGC	1 cut(s)	79
BspANI	GGCC	4 cut(s)	95, 364, 412, 457
BspCNI	CTCAG	1 cut(s)	610
BspLI	GGNNCC	4 cut(s)	243, 270, 315, 645
BspMAI	CTGCAG	1 cut(s)	658
BspPI	GGATC	1 cut(s)	278
BspT107I	GGYRCC	1 cut(s)	241
BspTI	CTTAAG	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	385
BsrI	ACTGG	4 cut(s)	49, 272, 347, 694
BssMI	GATC	3 cut(s)	283, 478, 706
Bst2UI	CCWGG	3 cut(s)	131, 228, 620
Bst4CI	ACNGT	2 cut(s)	145, 438
Bst6I	CTCTTC	2 cut(s)	231, 303
BstAFI	CTTAAG	1 cut(s)	89
BstC8I	GCNNGC	2 cut(s)	83, 153
BstDEI	CTNAG	2 cut(s)	184, 597
BstF5I	GGATG	6 cut(s)	210, 256, 262, 283, 553, 640
BstKTI	GATC	3 cut(s)	286, 481, 709
BstMAI	GTCTC	1 cut(s)	674
BstMBI	GATC	3 cut(s)	283, 478, 706
BstMWI	GCNNNNNNNGC	7 cut(s)	167, 176, 188, 197, 370, 418, 565
BstNI	CCWGG	3 cut(s)	131, 228, 620
BstSCI	CCNGG	3 cut(s)	129, 226, 618
BstSFI	CTRYAG	1 cut(s)	654
BstV1I	GCAGC	6 cut(s)	191, 388, 526, 529, 577, 580
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BsuRI	GGCC	4 cut(s)	95, 364, 412, 457
BtrI	CACGTC	1 cut(s)	136
BtsCI	GGATG	6 cut(s)	210, 256, 262, 283, 553, 640
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	2 cut(s)	83, 153
CaiI	CAGNNNCTG	1 cut(s)	653
Cfr13I	GGNCC	5 cut(s)	362, 383, 410, 455, 692
CsiI	ACCWGGT	1 cut(s)	618
CspCI	CAANNNNNGTGG	2 cut(s)	234, 269
DdeI	CTNAG	2 cut(s)	184, 597
DpnI	GATC	3 cut(s)	285, 480, 708
DpnII	GATC	3 cut(s)	283, 478, 706
Eam1104I	CTCTTC	2 cut(s)	231, 303
EarI	CTCTTC	2 cut(s)	231, 303
EciI	GGCGGA	1 cut(s)	68
Eco32I	GATATC	1 cut(s)	56
Eco47I	GGWCC	2 cut(s)	383, 692
Eco57I	CTGAAG	3 cut(s)	387, 435, 465
Eco88I	CYCGRG	1 cut(s)	119
EcoRII	CCWGG	3 cut(s)	129, 226, 618
EcoRV	GATATC	1 cut(s)	56
FaiI	YATR	4 cut(s)	332, 351, 678, 766
FbaI	TGATCA	2 cut(s)	478, 706
Fnu4HI	GCNGC	6 cut(s)	180, 402, 515, 518, 566, 569
FokI	GGATG	6 cut(s)	197, 263, 269, 290, 560, 647
Fsp4HI	GCNGC	6 cut(s)	180, 402, 515, 518, 566, 569
FspBI	CTAG	4 cut(s)	107, 290, 320, 459
GluI	GCNGC	6 cut(s)	180, 402, 515, 518, 566, 569
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	4 cut(s)	95, 364, 412, 457
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HindIII	AAGCTT	1 cut(s)	159
HinfI	GANTC	4 cut(s)	115, 508, 553, 601
Hpy166II	GTNNAC	2 cut(s)	434, 441
Hpy188I	TCNGA	1 cut(s)	600
Hpy188III	TCNNGA	4 cut(s)	51, 119, 320, 386
Hpy8I	GTNNAC	2 cut(s)	434, 441
HpyAV	CCTTC	2 cut(s)	440, 536
HpyCH4III	ACNGT	2 cut(s)	145, 438
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	4 cut(s)	373, 421, 487, 656
HpyF10VI	GCNNNNNNNGC	7 cut(s)	167, 176, 188, 197, 370, 418, 565
HpyF3I	CTNAG	2 cut(s)	184, 597
HpySE526I	ACGT	1 cut(s)	135
Ksp22I	TGATCA	2 cut(s)	478, 706
Kzo9I	GATC	3 cut(s)	283, 478, 706
LmnI	GCTCC	6 cut(s)	34, 229, 268, 500, 598, 655
Lsp1109I	GCAGC	6 cut(s)	191, 388, 526, 529, 577, 580
LweI	GCATC	1 cut(s)	94
MabI	ACCWGGT	1 cut(s)	618
MaeI	CTAG	4 cut(s)	107, 290, 320, 459
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	3 cut(s)	285, 480, 708
MboI	GATC	3 cut(s)	283, 478, 706
MboII	GAAGA	2 cut(s)	248, 320
MflI	RGATCY	1 cut(s)	283
MluCI	AATT	4 cut(s)	17, 327, 673, 733
MmeI	TCCRAC	1 cut(s)	762
MnlI	CCTC	8 cut(s)	181, 232, 304, 327, 455, 606, 625, 634
MroXI	GAANNNNTTC	1 cut(s)	312
MseI	TTAA	3 cut(s)	90, 126, 672
MslI	CAYNNNNRTG	2 cut(s)	215, 714
MspCI	CTTAAG	1 cut(s)	89
MspR9I	CCNGG	3 cut(s)	131, 228, 620
MvaI	CCWGG	3 cut(s)	131, 228, 620
MwoI	GCNNNNNNNGC	7 cut(s)	167, 176, 188, 197, 370, 418, 565
NdeII	GATC	3 cut(s)	283, 478, 706
NlaIV	GGNNCC	4 cut(s)	243, 270, 315, 645
PaeR7I	CTCGAG	1 cut(s)	119
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	4 cut(s)	115, 508, 553, 601
PkrI	GCNGC	6 cut(s)	181, 403, 516, 519, 567, 570
Psp6I	CCWGG	3 cut(s)	129, 226, 618
PspGI	CCWGG	3 cut(s)	129, 226, 618
PspN4I	GGNNCC	4 cut(s)	243, 270, 315, 645
PspPI	GGNCC	5 cut(s)	362, 383, 410, 455, 692
PstI	CTGCAG	1 cut(s)	658
PstNI	CAGNNNCTG	1 cut(s)	653
PsuI	RGATCY	1 cut(s)	283
RseI	CAYNNNNRTG	2 cut(s)	215, 714
SaqAI	TTAA	3 cut(s)	90, 126, 672
SatI	GCNGC	6 cut(s)	180, 402, 515, 518, 566, 569
Sau3AI	GATC	3 cut(s)	283, 478, 706
Sau96I	GGNCC	5 cut(s)	362, 383, 410, 455, 692
ScrFI	CCNGG	3 cut(s)	131, 228, 620
SexAI	ACCWGGT	1 cut(s)	618
SfaNI	GCATC	1 cut(s)	94
SfcI	CTRYAG	1 cut(s)	654
Sfr274I	CTCGAG	1 cut(s)	119
SinI	GGWCC	2 cut(s)	383, 692
SlaI	CTCGAG	1 cut(s)	119
SmiMI	CAYNNNNRTG	2 cut(s)	215, 714
SmlI	CTYRAG	4 cut(s)	89, 119, 156, 531
SmoI	CTYRAG	4 cut(s)	89, 119, 156, 531
Sse9I	AATT	4 cut(s)	17, 327, 673, 733
SsiI	CCGC	1 cut(s)	79
SspMI	CTAG	4 cut(s)	107, 290, 320, 459
StyD4I	CCNGG	3 cut(s)	129, 226, 618
TaaI	ACNGT	2 cut(s)	145, 438
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	1 cut(s)	120
TasI	AATT	4 cut(s)	17, 327, 673, 733
TfiI	GAWTC	4 cut(s)	115, 508, 553, 601
Tru1I	TTAA	3 cut(s)	90, 126, 672
Tru9I	TTAA	3 cut(s)	90, 126, 672
TscAI	CASTG	1 cut(s)	279
TseI	GCWGC	6 cut(s)	179, 401, 514, 517, 565, 568
TspDTI	ATGAA	4 cut(s)	114, 276, 321, 555
TspRI	CASTG	1 cut(s)	279
Vha464I	CTTAAG	1 cut(s)	89
VpaK11BI	GGWCC	2 cut(s)	383, 692
XapI	RAATTY	1 cut(s)	733
XbaI	TCTAGA	1 cut(s)	319
XhoI	CTCGAG	1 cut(s)	119
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	4 cut(s)	107, 290, 320, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.