Rh7AG187400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002555
Physical Location & Seq
Forward (+)
16763451 .. 16767575
4125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG187400.1

Sequence Viewer

Length: 870 bp
ATGGCTAATTATTGGAGATATTTCCGGCTGGATGGGGATCCACCTGTGTTTTCAGGAGATGTTGAGGGTGTTGAAGAGGTGCCAAAGGATGCGGATGATGAAAAGGAGCCAGTGGATGTAGATCCACTAGATGTAGATGATGATGAAGAGGTTCATTTGGATGGAATTATGCCTGAAAACTGGGAATATACTGATGATGGGCCTGAAGTGCAAAGCAATGGTCCAGAAATGAGTGAAGCTGCTAATGGGCCTGAAGTGCAGAGTGGTGGTCCACAGTCAACTGCAGGCAATGGCCCTAGAGTTGGAGCTCAAGCCCGTGGCCCAACTATTACAACTGCAAGAGGCAGAGATCATCAAGCAGCCACTTCAAGACAAAAAGATAAAGGGAAGCAGAAAGTTATAGAGGAAGAAGGGAATGTGGAGAATGAGCAAATGCAGGGGAATGGGGGAGCTGTGAATCAGCAGCAGCAACCCCAAGCTCAAGGGAATGGGGGGACTGTGAATAAGCACCAGCAGCAGCCCCAAGCTCAAAATGTTGAAGCTCCTCATAATCATCAGCAACAACACCAGGTTTCAATGGAGGATGTTGAGGTTCCAGCTCCTGCAGAGCCACCACAGGTTAATTCTGAGACTATTACTGGACCTGTGAATGTTGATCACTTCAATGTAATGCCATCACAAAATTCCACCAATAATGGTCAGCAGACACAGGTAAATCAGCAAACTGGAGCCTCCTCCAGGCCTCTGTTTTCAGGAAAAAGGTTCAAATCCCCAGCAAAAAGAATCAAATTCCCAAAGAACCCTACACAAGAGTCTACTTCTAGCACTGCTTCTAGAACTGGAAGTAAGAAGGCTAATTGGAAGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

289

Amino Acids

31.46

Weight (kDa)

4.79

Isoelectric Point (pI)

48.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 79
AccI GTMKAC 1 cut(s) 815
AciI CCGC 1 cut(s) 92
AclWI GGATC 3 cut(s) 32, 45, 116
AcsI RAATTY 2 cut(s) 682, 788
AcuI CTGAAG 2 cut(s) 225, 273
AfaI GTAC 1 cut(s) 866
AfiI CCNNNNNNNGG 2 cut(s) 302, 738
AgsI TTSAA 6 cut(s) 74, 369, 539, 576, 664, 766
AjnI CCWGG 2 cut(s) 567, 737
AluBI AGCT 7 cut(s) 239, 308, 452, 479, 527, 542, 599
AluI AGCT 7 cut(s) 239, 308, 452, 479, 527, 542, 599
Alw21I GWGCWC 1 cut(s) 310
Alw26I GTCTC 1 cut(s) 623
AlwI GGATC 3 cut(s) 32, 45, 116
AlwNI CAGNNNCTG 1 cut(s) 602
AoxI GGCC 5 cut(s) 200, 248, 292, 319, 740
ApeKI GCWGC 6 cut(s) 239, 359, 463, 466, 514, 517
ApoI RAATTY 2 cut(s) 682, 788
ArsI GACNNNNNNTTYG 2 cut(s) 205, 237
Asp700I GAANNNNTTC 1 cut(s) 150
AspS9I GGNCC 7 cut(s) 200, 221, 248, 269, 293, 320, 641
AvaII GGWCC 3 cut(s) 221, 269, 641
BamHI GGATCC 1 cut(s) 37
BanI GGYRCC 1 cut(s) 79
BanII GRGCYC 1 cut(s) 310
Bbv12I GWGCWC 1 cut(s) 310
BbvI GCAGC 6 cut(s) 226, 371, 475, 478, 526, 529
BccI CCATC 4 cut(s) 26, 155, 191, 682
BciT130I CCWGG 2 cut(s) 569, 739
BclI TGATCA 1 cut(s) 655
BcoDI GTCTC 1 cut(s) 623
BfaI CTAG 4 cut(s) 128, 297, 822, 834
BfmI CTRYAG 2 cut(s) 282, 603
BisI GCNGC 6 cut(s) 240, 360, 464, 467, 515, 518
BlsI GCNGC 6 cut(s) 241, 361, 465, 468, 516, 519
BmcAI AGTACT 1 cut(s) 866
Bme1390I CCNGG 2 cut(s) 569, 739
Bme18I GGWCC 3 cut(s) 221, 269, 641
BmgT120I GGNCC 7 cut(s) 200, 221, 248, 269, 293, 320, 641
BmiI GGNNCC 5 cut(s) 39, 81, 108, 594, 730
BmrFI CCNGG 2 cut(s) 569, 739
BmrI ACTGGG 1 cut(s) 190
BmsI GCATC 1 cut(s) 79
BmuI ACTGGG 1 cut(s) 190
BpmI CTGGAG 2 cut(s) 721, 747
BpuEI CTTGAG 2 cut(s) 294, 465
BsaBI GATNNNNATC 2 cut(s) 36, 120
BsaJI CCNNGG 1 cut(s) 316
Bsc4I CCNNNNNNNGG 2 cut(s) 302, 738
Bse1I ACTGG 5 cut(s) 110, 185, 643, 730, 844
Bse3DI GCAATG 2 cut(s) 223, 295
Bse8I GATNNNNATC 2 cut(s) 36, 120
BseBI CCWGG 2 cut(s) 569, 739
BseDI CCNNGG 1 cut(s) 316
BseGI GGATG 6 cut(s) 37, 94, 100, 121, 166, 589
BseJI GATNNNNATC 2 cut(s) 36, 120
BseLI CCNNNNNNNGG 2 cut(s) 302, 738
BseMI GCAATG 2 cut(s) 223, 295
BseMII CTCAG 1 cut(s) 618
BseNI ACTGG 5 cut(s) 110, 185, 643, 730, 844
BseRI GAGGAG 2 cut(s) 534, 724
BseXI GCAGC 6 cut(s) 226, 371, 475, 478, 526, 529
BseYI CCCAGC 1 cut(s) 772
BsgI GTGCAG 1 cut(s) 278
BshFI GGCC 5 cut(s) 202, 250, 294, 321, 742
BshNI GGYRCC 1 cut(s) 79
BsiHKAI GWGCWC 1 cut(s) 310
BsiSI CCGG 1 cut(s) 25
BslFI GGGAC 1 cut(s) 508
BslI CCNNNNNNNGG 2 cut(s) 302, 738
BsmAI GTCTC 1 cut(s) 623
BsmFI GGGAC 1 cut(s) 508
BsnI GGCC 5 cut(s) 202, 250, 294, 321, 742
Bsp1286I GDGCHC 1 cut(s) 310
Bsp143I GATC 4 cut(s) 37, 121, 349, 655
BspACI CCGC 1 cut(s) 92
BspANI GGCC 5 cut(s) 202, 250, 294, 321, 742
BspCNI CTCAG 1 cut(s) 619
BspLI GGNNCC 5 cut(s) 39, 81, 108, 594, 730
BspMAI CTGCAG 2 cut(s) 286, 607
BspPI GGATC 3 cut(s) 32, 45, 116
BspT107I GGYRCC 1 cut(s) 79
BsrDI GCAATG 2 cut(s) 223, 295
BsrI ACTGG 5 cut(s) 110, 185, 643, 730, 844
BssECI CCNNGG 1 cut(s) 316
BssMI GATC 4 cut(s) 37, 121, 349, 655
Bst2UI CCWGG 2 cut(s) 569, 739
Bst4CI ACNGT 2 cut(s) 276, 499
Bst6I CTCTTC 2 cut(s) 69, 141
BstC8I GCNNGC 1 cut(s) 286
BstDEI CTNAG 1 cut(s) 627
BstDSI CCRYGG 1 cut(s) 316
BstENI CCTNNNNNAGG 1 cut(s) 736
BstF5I GGATG 6 cut(s) 37, 94, 100, 121, 166, 589
BstKTI GATC 4 cut(s) 40, 124, 352, 658
BstMAI GTCTC 1 cut(s) 623
BstMBI GATC 4 cut(s) 37, 121, 349, 655
BstMWI GCNNNNNNNGC 3 cut(s) 208, 256, 514
BstNI CCWGG 2 cut(s) 569, 739
BstSCI CCNGG 2 cut(s) 567, 737
BstSFI CTRYAG 2 cut(s) 282, 603
BstV1I GCAGC 6 cut(s) 226, 371, 475, 478, 526, 529
BstX2I RGATCY 2 cut(s) 37, 121
BstYI RGATCY 2 cut(s) 37, 121
BsuRI GGCC 5 cut(s) 202, 250, 294, 321, 742
BtgI CCRYGG 1 cut(s) 316
BtsCI GGATG 6 cut(s) 37, 94, 100, 121, 166, 589
BtsI GCAGTG 1 cut(s) 825
BtsIMutI CAGTG 2 cut(s) 117, 825
Cac8I GCNNGC 1 cut(s) 286
CaiI CAGNNNCTG 1 cut(s) 602
Cfr13I GGNCC 7 cut(s) 200, 221, 248, 269, 293, 320, 641
CsiI ACCWGGT 1 cut(s) 567
Csp6I GTAC 1 cut(s) 865
CviQI GTAC 1 cut(s) 865
DdeI CTNAG 1 cut(s) 627
DpnI GATC 4 cut(s) 39, 123, 351, 657
DpnII GATC 4 cut(s) 37, 121, 349, 655
Eam1104I CTCTTC 2 cut(s) 69, 141
EarI CTCTTC 2 cut(s) 69, 141
Ecl136II GAGCTC 1 cut(s) 308
Eco147I AGGCCT 1 cut(s) 742
Eco24I GRGCYC 1 cut(s) 310
Eco47I GGWCC 3 cut(s) 221, 269, 641
Eco53kI GAGCTC 1 cut(s) 308
Eco57I CTGAAG 2 cut(s) 225, 273
EcoICRI GAGCTC 1 cut(s) 308
EcoNI CCTNNNNNAGG 1 cut(s) 736
EcoRII CCWGG 2 cut(s) 567, 737
EcoT38I GRGCYC 1 cut(s) 310
FaiI YATR 4 cut(s) 170, 189, 401, 549
FaqI GGGAC 1 cut(s) 508
FbaI TGATCA 1 cut(s) 655
FblI GTMKAC 1 cut(s) 815
Fnu4HI GCNGC 6 cut(s) 240, 360, 464, 467, 515, 518
FokI GGATG 6 cut(s) 44, 101, 107, 128, 173, 596
FriOI GRGCYC 1 cut(s) 310
Fsp4HI GCNGC 6 cut(s) 240, 360, 464, 467, 515, 518
FspBI CTAG 4 cut(s) 128, 297, 822, 834
GluI GCNGC 6 cut(s) 240, 360, 464, 467, 515, 518
GsaI CCCAGC 1 cut(s) 776
GsuI CTGGAG 2 cut(s) 721, 747
HaeIII GGCC 5 cut(s) 202, 250, 294, 321, 742
HapII CCGG 1 cut(s) 25
HincII GTYRAC 1 cut(s) 279
HindII GTYRAC 1 cut(s) 279
HinfI GANTC 3 cut(s) 457, 783, 812
HpaII CCGG 1 cut(s) 25
Hpy166II GTNNAC 3 cut(s) 272, 279, 816
Hpy188I TCNGA 1 cut(s) 628
Hpy188III TCNNGA 5 cut(s) 54, 224, 369, 753, 834
Hpy8I GTNNAC 3 cut(s) 272, 279, 816
HpyAV CCTTC 2 cut(s) 404, 844
HpyCH4III ACNGT 2 cut(s) 276, 499
HpyCH4V TGCA 6 cut(s) 211, 259, 284, 338, 436, 605
HpyF10VI GCNNNNNNNGC 3 cut(s) 208, 256, 514
HpyF3I CTNAG 1 cut(s) 627
Ksp22I TGATCA 1 cut(s) 655
Kzo9I GATC 4 cut(s) 37, 121, 349, 655
LmnI GCTCC 6 cut(s) 106, 305, 449, 547, 604, 728
Lsp1109I GCAGC 6 cut(s) 226, 371, 475, 478, 526, 529
LweI GCATC 1 cut(s) 79
MabI ACCWGGT 1 cut(s) 567
MaeI CTAG 4 cut(s) 128, 297, 822, 834
MalI GATC 4 cut(s) 39, 123, 351, 657
MboI GATC 4 cut(s) 37, 121, 349, 655
MboII GAAGA 3 cut(s) 86, 158, 419
MflI RGATCY 2 cut(s) 37, 121
MhlI GDGCHC 1 cut(s) 310
MluCI AATT 6 cut(s) 7, 165, 622, 682, 788, 856
MlyI GAGTC 1 cut(s) 821
MmeI TCCRAC 1 cut(s) 283
MroXI GAANNNNTTC 1 cut(s) 150
MseI TTAA 1 cut(s) 621
MslI CAYNNNNRTG 2 cut(s) 159, 663
MspI CCGG 1 cut(s) 25
MspR9I CCNGG 2 cut(s) 569, 739
MvaI CCWGG 2 cut(s) 569, 739
MwoI GCNNNNNNNGC 3 cut(s) 208, 256, 514
NdeII GATC 4 cut(s) 37, 121, 349, 655
NlaIV GGNNCC 5 cut(s) 39, 81, 108, 594, 730
PceI AGGCCT 1 cut(s) 742
PdmI GAANNNNTTC 1 cut(s) 150
PfeI GAWTC 2 cut(s) 457, 783
PkrI GCNGC 6 cut(s) 241, 361, 465, 468, 516, 519
PleI GAGTC 1 cut(s) 820
PpsI GAGTC 1 cut(s) 820
Psp124BI GAGCTC 1 cut(s) 310
Psp6I CCWGG 2 cut(s) 567, 737
PspFI CCCAGC 1 cut(s) 772
PspGI CCWGG 2 cut(s) 567, 737
PspN4I GGNNCC 5 cut(s) 39, 81, 108, 594, 730
PspPI GGNCC 7 cut(s) 200, 221, 248, 269, 293, 320, 641
PstI CTGCAG 2 cut(s) 286, 607
PstNI CAGNNNCTG 1 cut(s) 602
PsuI RGATCY 2 cut(s) 37, 121
RsaI GTAC 1 cut(s) 866
RsaNI GTAC 1 cut(s) 865
RseI CAYNNNNRTG 2 cut(s) 159, 663
SacI GAGCTC 1 cut(s) 310
SaqAI TTAA 1 cut(s) 621
SatI GCNGC 6 cut(s) 240, 360, 464, 467, 515, 518
Sau3AI GATC 4 cut(s) 37, 121, 349, 655
Sau96I GGNCC 7 cut(s) 200, 221, 248, 269, 293, 320, 641
ScaI AGTACT 1 cut(s) 866
SchI GAGTC 1 cut(s) 821
ScrFI CCNGG 2 cut(s) 569, 739
SduI GDGCHC 1 cut(s) 310
SexAI ACCWGGT 1 cut(s) 567
SfaNI GCATC 1 cut(s) 79
SfcI CTRYAG 2 cut(s) 282, 603
SinI GGWCC 3 cut(s) 221, 269, 641
SmiMI CAYNNNNRTG 2 cut(s) 159, 663
SmlI CTYRAG 2 cut(s) 309, 480
SmoI CTYRAG 2 cut(s) 309, 480
Sse9I AATT 6 cut(s) 7, 165, 622, 682, 788, 856
SseBI AGGCCT 1 cut(s) 742
SsiI CCGC 1 cut(s) 92
SspMI CTAG 4 cut(s) 128, 297, 822, 834
SstI GAGCTC 1 cut(s) 310
StuI AGGCCT 1 cut(s) 742
StyD4I CCNGG 2 cut(s) 567, 737
TaaI ACNGT 2 cut(s) 276, 499
TasI AATT 6 cut(s) 7, 165, 622, 682, 788, 856
TatI WGTACW 1 cut(s) 864
TfiI GAWTC 2 cut(s) 457, 783
Tru1I TTAA 1 cut(s) 621
Tru9I TTAA 1 cut(s) 621
TscAI CASTG 2 cut(s) 117, 832
TseI GCWGC 6 cut(s) 239, 359, 463, 466, 514, 517
TspDTI ATGAA 3 cut(s) 114, 143, 159
TspRI CASTG 2 cut(s) 117, 832
VpaK11BI GGWCC 3 cut(s) 221, 269, 641
XagI CCTNNNNNAGG 1 cut(s) 736
XapI RAATTY 2 cut(s) 682, 788
XbaI TCTAGA 1 cut(s) 833
XmiI GTMKAC 1 cut(s) 815
XmnI GAANNNNTTC 1 cut(s) 150
XspI CTAG 4 cut(s) 128, 297, 822, 834
ZrmI AGTACT 1 cut(s) 866
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.